Mutagenetix > Incidental Mutation

Incidental Mutation 'R5906:Ssbp3'

460615

Institutional Source

Beutler Lab

Gene Symbol

Ssbp3

Ensembl Gene

ENSMUSG00000061887

Gene Name

single-stranded DNA binding protein 3

Synonyms

2610200M23Rik, 2610021L12Rik, 5730488C10Rik

MMRRC Submission

044103-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5906 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

106768667-106906891 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

A to G at 106867018 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000116248 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030367] [ENSMUST00000072753] [ENSMUST00000097934] [ENSMUST00000131440] [ENSMUST00000149926]

AlphaFold

Q9D032

Predicted Effect

probably benign
Transcript: ENSMUST00000030367

SMART Domains

Protein: ENSMUSP00000030367
Gene: ENSMUSG00000061887

Domain	Start	End	E-Value	Type
LisH	16	48	2.18e-3	SMART
Pfam:SSDP	81	365	8.2e-102	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000072753

SMART Domains

Protein: ENSMUSP00000072536
Gene: ENSMUSG00000061887

Domain	Start	End	E-Value	Type
LisH	16	48	2.18e-3	SMART
Pfam:SSDP	81	343	6.7e-112	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000097934

SMART Domains

Protein: ENSMUSP00000095547
Gene: ENSMUSG00000061887

Domain	Start	End	E-Value	Type
LisH	16	48	2.18e-3	SMART
Pfam:SSDP	81	151	6.3e-27	PFAM
Pfam:SSDP	148	350	8.4e-88	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124936

Predicted Effect

probably benign
Transcript: ENSMUST00000131440

SMART Domains

Protein: ENSMUSP00000120323
Gene: ENSMUSG00000061887

Domain	Start	End	E-Value	Type
Pfam:SSDP	2	33	1.6e-11	PFAM
Pfam:SSDP	33	93	2.2e-28	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132506

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138475

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146659

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150915

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141963

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148842

Predicted Effect

probably benign
Transcript: ENSMUST00000149926

SMART Domains

Protein: ENSMUSP00000116248
Gene: ENSMUSG00000061887

Domain	Start	End	E-Value	Type
LisH	16	48	2.18e-3	SMART
Pfam:SSDP	81	126	1.4e-19	PFAM
Pfam:SSDP	121	226	9.4e-42	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.4%
10x: 97.4%
20x: 92.4%

Validation Efficiency

95% (81/85)

MGI Phenotype

FUNCTION: This gene encodes a member of the Ssdp (sequence-specific single-stranded DNA binding protein) family of proteins. The encoded protein binds specifically to single-stranded pyrimidine-rich DNA elements. The encoded protein has been shown to be important for head development and may play a role in the differentiation of spinal interneurons. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]
PHENOTYPE: Embryos homozygous for a gene trap mutation that deletes the proline-rich domain show a severe anterior truncation and a lethal headless phenotype (loss of fore- and midbrain). Embryos homozygous for a gene trap mutation which retains most of the proline-rich domain show normal head development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930438A08Rik	C	A	11: 58,182,260 (GRCm39)		probably null	Het
9130023H24Rik	G	A	7: 127,835,664 (GRCm39)	P310S	probably benign	Het
Abcc10	G	T	17: 46,627,485 (GRCm39)	H652Q	probably benign	Het
Actl6b	A	G	5: 137,565,591 (GRCm39)	I396V	possibly damaging	Het
Acvr1b	T	C	15: 101,091,772 (GRCm39)		probably benign	Het
Adamts18	A	T	8: 114,436,251 (GRCm39)	H989Q	probably benign	Het
Adamtsl4	T	C	3: 95,588,094 (GRCm39)	Y631C	probably damaging	Het
Angptl3	A	G	4: 98,925,804 (GRCm39)	T377A	probably benign	Het
Ankmy2	G	A	12: 36,226,632 (GRCm39)	V109M	probably damaging	Het
Anpep	G	A	7: 79,483,423 (GRCm39)	A689V	probably benign	Het
Brwd1	A	T	16: 95,859,938 (GRCm39)	M350K	probably damaging	Het
Cacna1d	C	T	14: 29,818,917 (GRCm39)	V1213I	probably damaging	Het
Capn1	A	G	19: 6,061,451 (GRCm39)	F156L	possibly damaging	Het
Catsperb	C	A	12: 101,476,721 (GRCm39)	F408L	probably damaging	Het
Ccdc146	A	T	5: 21,506,350 (GRCm39)	L697Q	possibly damaging	Het
Cdc37l1	T	A	19: 28,989,386 (GRCm39)	V281E	probably benign	Het
Chia1	A	T	3: 106,039,304 (GRCm39)	T465S	probably benign	Het
Cidec	A	T	6: 113,405,282 (GRCm39)		probably null	Het
Clcnkb	T	C	4: 141,139,610 (GRCm39)	T131A	probably benign	Het
Clec5a	T	A	6: 40,558,793 (GRCm39)	M98L	probably benign	Het
Cnga1	A	T	5: 72,768,201 (GRCm39)	F162I	probably benign	Het
Cyp27b1	A	T	10: 126,884,267 (GRCm39)	I40F	probably damaging	Het
Edrf1	A	G	7: 133,265,144 (GRCm39)	S1027G	probably benign	Het
Entpd1	C	A	19: 40,727,283 (GRCm39)	A448E	probably damaging	Het
Espl1	T	C	15: 102,205,286 (GRCm39)		probably null	Het
Etfdh	T	C	3: 79,511,422 (GRCm39)	I520V	probably damaging	Het
Fchsd1	C	T	18: 38,092,926 (GRCm39)		probably benign	Het
Gabra4	G	A	5: 71,781,253 (GRCm39)	P386L	probably benign	Het
Gckr	G	T	5: 31,463,922 (GRCm39)	V281L	probably damaging	Het
Gfy	T	C	7: 44,827,167 (GRCm39)	T310A	probably benign	Het
Gjc2	C	A	11: 59,067,667 (GRCm39)	V272L	probably benign	Het
Gm13441	G	C	2: 31,777,511 (GRCm39)		silent	Het
H2-DMb2	T	A	17: 34,367,582 (GRCm39)	M1K	probably null	Het
Hipk3	T	C	2: 104,302,153 (GRCm39)	Y13C	probably damaging	Het
Kcnt1	A	T	2: 25,784,536 (GRCm39)		probably benign	Het
Kcnt1	T	C	2: 25,788,413 (GRCm39)	F336S	probably damaging	Het
Klhdc7b	A	G	15: 89,271,359 (GRCm39)	D747G	probably benign	Het
Krt78	T	A	15: 101,857,030 (GRCm39)	E359V	probably damaging	Het
Mast4	T	C	13: 102,872,252 (GRCm39)	D2195G	probably benign	Het
Matk	C	T	10: 81,096,753 (GRCm39)	L188F	probably damaging	Het
Mcoln2	T	C	3: 145,889,496 (GRCm39)	I399T	probably damaging	Het
Mroh2a	A	G	1: 88,186,386 (GRCm39)	S64G	probably benign	Het
Nap1l1	A	T	10: 111,326,891 (GRCm39)	K151*	probably null	Het
Ncbp3	T	A	11: 72,964,327 (GRCm39)	S426T	probably benign	Het
Nisch	T	A	14: 30,893,985 (GRCm39)		probably null	Het
Or4k15b	T	C	14: 50,272,306 (GRCm39)	T185A	probably benign	Het
Or5b113	T	C	19: 13,342,369 (GRCm39)	C126R	probably damaging	Het
Or8a1b	A	G	9: 37,623,101 (GRCm39)	I158T	probably benign	Het
Or8b8	A	G	9: 37,809,174 (GRCm39)	H158R	probably damaging	Het
Peg3	T	C	7: 6,720,854 (GRCm39)	D17G	probably damaging	Het
Pkd1	G	A	17: 24,791,894 (GRCm39)	V1194M	probably benign	Het
Pkd1l2	A	T	8: 117,756,387 (GRCm39)	I1615N	probably damaging	Het
Pkd2	A	T	5: 104,625,045 (GRCm39)		probably null	Het
Pkp4	T	A	2: 59,135,420 (GRCm39)	N97K	possibly damaging	Het
Prrx2	C	T	2: 30,769,522 (GRCm39)	R78C	probably damaging	Het
Pycr1	T	A	11: 120,532,988 (GRCm39)	I91F	probably damaging	Het
Rap1a	T	C	3: 105,645,081 (GRCm39)	N87S	possibly damaging	Het
Sbk2	T	G	7: 4,960,627 (GRCm39)	Y181S	probably damaging	Het
Scart1	T	A	7: 139,808,712 (GRCm39)	D874E	probably damaging	Het
Sec16a	A	T	2: 26,328,843 (GRCm39)	H1057Q	possibly damaging	Het
Sfswap	G	A	5: 129,619,107 (GRCm39)	E486K	probably benign	Het
Shank3	T	C	15: 89,433,119 (GRCm39)	V1213A	probably damaging	Het
Slfn5	T	A	11: 82,848,102 (GRCm39)	I329K	probably benign	Het
Slit1	T	A	19: 41,594,813 (GRCm39)	N1186Y	probably damaging	Het
Steap3	T	A	1: 120,171,731 (GRCm39)	I125F	probably damaging	Het
Synpr	C	A	14: 13,608,788 (GRCm38)		probably benign	Het
Tom1	T	C	8: 75,776,886 (GRCm39)	L69P	probably damaging	Het
Traf3ip3	T	A	1: 192,880,314 (GRCm39)	D5V	possibly damaging	Het
Vmn1r29	G	A	6: 58,284,736 (GRCm39)	S152N	probably benign	Het
Vmn1r68	T	C	7: 10,261,550 (GRCm39)	I183V	probably benign	Het
Wdr17	C	G	8: 55,092,503 (GRCm39)	V1094L	probably benign	Het
Wdr95	A	G	5: 149,487,692 (GRCm39)	I109V	possibly damaging	Het
Zfp39	T	C	11: 58,793,717 (GRCm39)	D7G	probably benign	Het
Zfp512	A	T	5: 31,637,408 (GRCm39)	Q443L	probably damaging	Het
Zfp974	T	A	7: 27,610,230 (GRCm39)	K498N	possibly damaging	Het

Other mutations in Ssbp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01470:Ssbp3	APN	4	106,894,855 (GRCm39)	splice site	probably benign
R0179:Ssbp3	UTSW	4	106,903,585 (GRCm39)	missense	probably damaging	1.00
R1751:Ssbp3	UTSW	4	106,904,612 (GRCm39)	missense	probably damaging	1.00
R1767:Ssbp3	UTSW	4	106,904,612 (GRCm39)	missense	probably damaging	1.00
R4110:Ssbp3	UTSW	4	106,904,393 (GRCm39)	intron	probably benign
R5219:Ssbp3	UTSW	4	106,904,655 (GRCm39)	missense	probably damaging	1.00
R6288:Ssbp3	UTSW	4	106,903,277 (GRCm39)	splice site	probably null
R7174:Ssbp3	UTSW	4	106,894,843 (GRCm39)	missense	probably benign	0.01
R9630:Ssbp3	UTSW	4	106,895,426 (GRCm39)	missense	probably damaging	1.00
R9781:Ssbp3	UTSW	4	106,905,224 (GRCm39)	missense	probably damaging	1.00
Z1176:Ssbp3	UTSW	4	106,894,828 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- ACAGGGACCAAAAGCTCTG -3'
(R):5'- ATTGGCCTGGAAGCACTGAC -3'

Sequencing Primer
(F):5'- ACCAAAAGCTCTGTGTGTGG -3'
(R):5'- CTGGAAGCACTGACTTCCC -3'

Posted On

2017-02-28