Mutagenetix > Incidental Mutation

Incidental Mutation 'R5907:Rars'

460726

Institutional Source

Beutler Lab

Gene Symbol

Rars

Ensembl Gene

ENSMUSG00000018848

Gene Name

arginyl-tRNA synthetase

Synonyms

MMRRC Submission

044104-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.965) question?

Stock #

R5907 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

35808381-35834506 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 35828648 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 116 (N116D)

Ref Sequence

ENSEMBL: ENSMUSP00000018992 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000018992]

AlphaFold

Q9D0I9

Predicted Effect

probably damaging
Transcript: ENSMUST00000018992
AA Change: N116D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000018992
Gene: ENSMUSG00000018848
AA Change: N116D

Domain	Start	End	E-Value	Type
Blast:Arg_tRNA_synt_N	16	60	6e-13	BLAST
Arg_tRNA_synt_N	78	166	1.6e-27	SMART
Pfam:tRNA-synt_1d	174	520	1.2e-164	PFAM
DALR_1	534	660	3.12e-30	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137815

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000166122

Meta Mutation Damage Score

0.8011

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.9%
20x: 93.7%

Validation Efficiency

93% (92/99)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution. Arginyl-tRNA synthetase belongs to the class-I aminoacyl-tRNA synthetase family. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921501E09Rik	G	T	17: 33,066,150 (GRCm38)	D559E	probably benign	Het
4931429L15Rik	A	T	9: 46,306,822 (GRCm38)	I206N	probably damaging	Het
Aadac	T	A	3: 60,039,827 (GRCm38)	D315E	probably damaging	Het
Abcc8	A	G	7: 46,123,906 (GRCm38)	F800L	probably benign	Het
Adamts16	C	A	13: 70,728,910 (GRCm38)	C1204F	probably damaging	Het
Adcy7	A	G	8: 88,312,228 (GRCm38)	T291A	possibly damaging	Het
AI182371	G	T	2: 35,086,122 (GRCm38)	Q255K	possibly damaging	Het
Aig1	A	T	10: 13,801,784 (GRCm38)		probably benign	Het
Ak5	T	C	3: 152,615,952 (GRCm38)	D266G	probably damaging	Het
Ank1	A	T	8: 23,140,204 (GRCm38)	E93D	probably damaging	Het
Bop1	T	C	15: 76,455,917 (GRCm38)	D153G	probably damaging	Het
Bub1	G	T	2: 127,819,222 (GRCm38)	N316K	probably benign	Het
Capn1	T	C	19: 5,997,797 (GRCm38)	N412S	probably benign	Het
Cdca4	A	G	12: 112,821,719 (GRCm38)	S130P	probably benign	Het
Cdh23	A	T	10: 60,428,379 (GRCm38)	D663E	probably damaging	Het
Clca3a1	T	C	3: 144,749,642 (GRCm38)		probably benign	Het
Csmd2	C	T	4: 128,197,385 (GRCm38)	P239L	probably damaging	Het
Dlg2	A	T	7: 91,997,371 (GRCm38)		probably benign	Het
Dnpep	C	T	1: 75,311,991 (GRCm38)		probably null	Het
Dopey2	A	T	16: 93,801,581 (GRCm38)	H1878L	probably damaging	Het
Dscam	C	T	16: 96,820,920 (GRCm38)	D444N	probably damaging	Het
Emc9	C	T	14: 55,582,112 (GRCm38)		probably null	Het
Ero1lb	T	A	13: 12,600,318 (GRCm38)	I346N	probably damaging	Het
Etv3	A	G	3: 87,535,543 (GRCm38)	T145A	probably benign	Het
Fam170a	T	A	18: 50,282,254 (GRCm38)		probably null	Het
Fap	A	T	2: 62,544,356 (GRCm38)	I261N	probably damaging	Het
Fbn2	T	C	18: 58,045,337 (GRCm38)	N1943S	probably damaging	Het
Glb1l3	A	T	9: 26,826,383 (GRCm38)	V466E	probably damaging	Het
Gm10521	A	T	1: 171,896,503 (GRCm38)	H127L	unknown	Het
Gm8186	G	T	17: 26,099,156 (GRCm38)	N22K	probably damaging	Het
Gpr132	A	C	12: 112,852,097 (GRCm38)	L370V	probably benign	Het
Hectd1	A	T	12: 51,798,754 (GRCm38)	H449Q	probably damaging	Het
Hook3	A	G	8: 26,044,278 (GRCm38)		probably benign	Het
Ift140	A	G	17: 25,092,371 (GRCm38)	D1180G	probably benign	Het
Isoc2b	A	T	7: 4,849,578 (GRCm38)		probably null	Het
Itga4	C	T	2: 79,322,656 (GRCm38)	H896Y	probably benign	Het
Itga7	T	C	10: 128,942,981 (GRCm38)	Y326H	probably damaging	Het
Itpr3	A	T	17: 27,117,893 (GRCm38)	E2397V	probably damaging	Het
Jtb	T	G	3: 90,235,577 (GRCm38)		probably null	Het
Klk15	A	G	7: 43,938,759 (GRCm38)	T164A	probably benign	Het
Kmt2e	C	A	5: 23,464,706 (GRCm38)	H64N	probably damaging	Het
Lamtor3	T	A	3: 137,927,293 (GRCm38)		probably benign	Het
Laptm4b	A	G	15: 34,258,684 (GRCm38)	I35V	possibly damaging	Het
Lrrc1	A	C	9: 77,434,097 (GRCm38)	L393R	probably damaging	Het
Ltn1	A	G	16: 87,381,503 (GRCm38)	S1613P	possibly damaging	Het
Mtmr4	T	A	11: 87,612,050 (GRCm38)	W920R	probably damaging	Het
Nbeal1	T	C	1: 60,228,791 (GRCm38)		probably benign	Het
Nup133	A	G	8: 123,916,299 (GRCm38)	Y761H	possibly damaging	Het
Nwd2	T	A	5: 63,805,983 (GRCm38)	V970D	probably damaging	Het
Olfr1058	A	T	2: 86,385,874 (GRCm38)	S181R	probably damaging	Het
Olfr1261	A	G	2: 89,993,957 (GRCm38)	H188R	probably benign	Het
Olfr429	T	C	1: 174,089,219 (GRCm38)	Y60H	probably benign	Het
Osbp	C	T	19: 11,973,876 (GRCm38)	L262F	probably damaging	Het
Phldb2	G	T	16: 45,825,188 (GRCm38)	D343E	probably damaging	Het
Phrf1	T	A	7: 141,260,540 (GRCm38)	M1216K	possibly damaging	Het
Phyh	A	T	2: 4,930,651 (GRCm38)		probably null	Het
Plekhf1	A	T	7: 38,222,170 (GRCm38)		probably null	Het
Rnf44	T	A	13: 54,682,808 (GRCm38)	Q181L	possibly damaging	Het
Rpe65	T	C	3: 159,615,682 (GRCm38)		probably null	Het
Scaf1	A	G	7: 45,013,592 (GRCm38)		probably benign	Het
Serpinb11	A	T	1: 107,372,189 (GRCm38)	R88S	probably benign	Het
Slc7a7	T	C	14: 54,379,103 (GRCm38)	N174S	probably damaging	Het
Slc9a5	T	C	8: 105,357,175 (GRCm38)		probably null	Het
Slfn1	C	A	11: 83,121,176 (GRCm38)	N39K	possibly damaging	Het
Snx20	G	A	8: 88,627,295 (GRCm38)	A269V	possibly damaging	Het
Snx6	A	G	12: 54,754,319 (GRCm38)	Y298H	probably damaging	Het
Stk32c	C	T	7: 139,120,674 (GRCm38)	R213Q	probably benign	Het
Tgfbr1	A	T	4: 47,396,555 (GRCm38)	I190F	probably damaging	Het
Ube2d2b	T	A	5: 107,830,632 (GRCm38)	F50I	probably damaging	Het
Ubl5	G	A	9: 20,646,534 (GRCm38)		probably benign	Het
Ubqln5	T	G	7: 104,128,574 (GRCm38)	T348P	possibly damaging	Het
Usp46	T	C	5: 74,037,085 (GRCm38)	D22G	probably benign	Het
Vars	A	G	17: 35,012,376 (GRCm38)	N655S	probably damaging	Het
Vmn2r103	A	C	17: 19,812,453 (GRCm38)	I830L	possibly damaging	Het
Vmn2r26	T	A	6: 124,039,871 (GRCm38)	N431K	probably benign	Het
Vmn2r4	G	T	3: 64,391,066 (GRCm38)	P547Q	probably damaging	Het
Yy1	T	A	12: 108,806,428 (GRCm38)		probably benign	Het
Zbtb2	A	T	10: 4,368,592 (GRCm38)	L478Q	possibly damaging	Het
Zfp12	T	C	5: 143,239,988 (GRCm38)	F17S	probably damaging	Het
Zfp219	T	A	14: 52,007,149 (GRCm38)		probably null	Het
Zfp629	G	A	7: 127,610,370 (GRCm38)	H756Y	probably damaging	Het
Zfp748	T	C	13: 67,541,173 (GRCm38)	K656R	possibly damaging	Het
Zfp958	T	A	8: 4,629,072 (GRCm38)	Y366N	probably benign	Het
Zp3	C	T	5: 135,988,523 (GRCm38)	T396I	probably benign	Het

Other mutations in Rars

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01568:Rars	APN	11	35,825,981 (GRCm38)	splice site	probably benign
IGL01672:Rars	APN	11	35,808,553 (GRCm38)	missense	probably damaging	0.99
IGL01721:Rars	APN	11	35,828,664 (GRCm38)	missense	probably damaging	1.00
IGL01887:Rars	APN	11	35,825,995 (GRCm38)	missense	probably benign	0.03
IGL02605:Rars	APN	11	35,824,526 (GRCm38)	splice site	probably benign
IGL03296:Rars	APN	11	35,816,696 (GRCm38)	nonsense	probably null
IGL03354:Rars	APN	11	35,824,475 (GRCm38)	missense	probably damaging	1.00
R0410:Rars	UTSW	11	35,826,020 (GRCm38)	missense	probably damaging	1.00
R1193:Rars	UTSW	11	35,809,326 (GRCm38)	missense	possibly damaging	0.92
R1222:Rars	UTSW	11	35,809,740 (GRCm38)	missense	probably damaging	1.00
R1418:Rars	UTSW	11	35,809,740 (GRCm38)	missense	probably damaging	1.00
R1562:Rars	UTSW	11	35,821,094 (GRCm38)	critical splice donor site	probably null
R1768:Rars	UTSW	11	35,809,638 (GRCm38)	missense	probably damaging	1.00
R1800:Rars	UTSW	11	35,825,995 (GRCm38)	missense	probably benign	0.03
R2055:Rars	UTSW	11	35,826,583 (GRCm38)	splice site	probably benign
R2294:Rars	UTSW	11	35,817,536 (GRCm38)	splice site	probably benign
R4281:Rars	UTSW	11	35,821,224 (GRCm38)	missense	probably damaging	1.00
R4807:Rars	UTSW	11	35,809,146 (GRCm38)	missense	possibly damaging	0.81
R4898:Rars	UTSW	11	35,808,558 (GRCm38)	missense	probably damaging	1.00
R5522:Rars	UTSW	11	35,817,368 (GRCm38)	nonsense	probably null
R6243:Rars	UTSW	11	35,826,547 (GRCm38)	missense	possibly damaging	0.64
R6289:Rars	UTSW	11	35,826,067 (GRCm38)	missense	probably damaging	1.00
R6550:Rars	UTSW	11	35,833,183 (GRCm38)	missense	probably benign	0.00
R6889:Rars	UTSW	11	35,808,486 (GRCm38)	missense	probably damaging	1.00
R7260:Rars	UTSW	11	35,834,454 (GRCm38)	missense	probably benign	0.00
R7682:Rars	UTSW	11	35,828,752 (GRCm38)	missense	probably benign	0.00
R7808:Rars	UTSW	11	35,828,707 (GRCm38)	missense	probably benign
R7822:Rars	UTSW	11	35,819,966 (GRCm38)	missense	probably damaging	0.99
R7856:Rars	UTSW	11	35,808,585 (GRCm38)	missense	probably benign	0.09
R8029:Rars	UTSW	11	35,821,165 (GRCm38)	missense	probably damaging	1.00
R9094:Rars	UTSW	11	35,827,355 (GRCm38)	splice site	probably benign
R9096:Rars	UTSW	11	35,827,429 (GRCm38)	missense	probably benign	0.00
R9300:Rars	UTSW	11	35,815,661 (GRCm38)	missense	probably damaging	1.00
Z1177:Rars	UTSW	11	35,826,109 (GRCm38)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- CACTTTCCAAATGTCATTAAGCAC -3'
(R):5'- TCCTGCAGAGTCTTCAGGAAG -3'

Sequencing Primer
(F):5'- TATTATCAATCCAGAACACAGCAAG -3'
(R):5'- TCTTCAGGAAGAAAGGAGAAAACC -3'

Posted On

2017-02-28