Incidental Mutation 'R5908:Slc9a8'
ID |
460766 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Slc9a8
|
Ensembl Gene |
ENSMUSG00000039463 |
Gene Name |
solute carrier family 9 (sodium/hydrogen exchanger), member 8 |
Synonyms |
1200006P13Rik, 6430709P13Rik, NHE8 |
MMRRC Submission |
044105-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R5908 (G1)
|
Quality Score |
99 |
Status
|
Validated
|
Chromosome |
2 |
Chromosomal Location |
167263632-167318920 bp(+) (GRCm39) |
Type of Mutation |
intron |
DNA Base Change (assembly) |
C to T
at 167293090 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000104841
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047815]
[ENSMUST00000073873]
[ENSMUST00000109218]
|
AlphaFold |
Q8R4D1 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000047815
|
SMART Domains |
Protein: ENSMUSP00000044185 Gene: ENSMUSG00000039463
Domain | Start | End | E-Value | Type |
low complexity region
|
44 |
51 |
N/A |
INTRINSIC |
Pfam:Na_H_Exchanger
|
57 |
468 |
3.3e-69 |
PFAM |
low complexity region
|
497 |
513 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000073873
|
SMART Domains |
Protein: ENSMUSP00000073536 Gene: ENSMUSG00000039463
Domain | Start | End | E-Value | Type |
low complexity region
|
44 |
51 |
N/A |
INTRINSIC |
Pfam:Na_H_Exchanger
|
54 |
441 |
3.5e-62 |
PFAM |
low complexity region
|
470 |
486 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000109218
|
SMART Domains |
Protein: ENSMUSP00000104841 Gene: ENSMUSG00000039463
Domain | Start | End | E-Value | Type |
low complexity region
|
44 |
51 |
N/A |
INTRINSIC |
Pfam:Na_H_Exchanger
|
54 |
437 |
3.7e-61 |
PFAM |
low complexity region
|
466 |
482 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000125855
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131956
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135353
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000148454
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000141400
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155585
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139673
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149607
|
Coding Region Coverage |
- 1x: 99.8%
- 3x: 99.4%
- 10x: 97.3%
- 20x: 91.8%
|
Validation Efficiency |
97% (69/71) |
MGI Phenotype |
FUNCTION: This gene encodes a member of the Na+/H+ exchanger (NHE) family of integral membrane transporter proteins. The encoded protein is expressed on the apical membrane of the intestinal epithelial cells and plays an important role in mucosal protection. Loss of the encoded protein in mice results in a decrease in the number of goblet and mucin-positive cells, disorganization of the mucin layer, and a decrease in mucosal pH in the colon. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2015] PHENOTYPE: Mice homozygous for a gene trap allele exhibit male infertility, impaired mucin synthesis and bicarbonate secretion in the colon, abnormal blood coagulation and increased length of the small intestine, cecum and ileum crypts. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 61 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcc10 |
A |
T |
17: 46,624,730 (GRCm39) |
L198H |
probably damaging |
Het |
Anks1 |
C |
T |
17: 28,214,993 (GRCm39) |
T480I |
probably damaging |
Het |
Arhgef18 |
G |
A |
8: 3,503,165 (GRCm39) |
R857Q |
probably damaging |
Het |
B230208B08Rik |
A |
G |
4: 78,132,297 (GRCm39) |
|
noncoding transcript |
Het |
B9d2 |
T |
A |
7: 25,382,724 (GRCm39) |
W33R |
probably damaging |
Het |
Bcl2a1c |
A |
G |
9: 114,159,572 (GRCm39) |
T117A |
probably benign |
Het |
Btbd8 |
T |
G |
5: 107,655,460 (GRCm39) |
D574E |
probably damaging |
Het |
Cabin1 |
A |
G |
10: 75,557,366 (GRCm39) |
S1091P |
probably damaging |
Het |
Clip3 |
C |
A |
7: 29,996,298 (GRCm39) |
D64E |
probably damaging |
Het |
Col6a5 |
C |
G |
9: 105,740,000 (GRCm39) |
D2540H |
possibly damaging |
Het |
Commd5 |
A |
T |
15: 76,785,136 (GRCm39) |
M178L |
probably benign |
Het |
Crtc3 |
T |
A |
7: 80,245,542 (GRCm39) |
H361L |
possibly damaging |
Het |
Dip2b |
T |
A |
15: 100,049,065 (GRCm39) |
L153Q |
possibly damaging |
Het |
Eif2s1 |
T |
A |
12: 78,926,817 (GRCm39) |
V189D |
probably damaging |
Het |
Etl4 |
C |
T |
2: 20,748,718 (GRCm39) |
A483V |
probably damaging |
Het |
Foxo3 |
T |
C |
10: 42,072,583 (GRCm39) |
I645V |
probably benign |
Het |
Gm4841 |
A |
G |
18: 60,403,506 (GRCm39) |
S196P |
possibly damaging |
Het |
Hip1 |
A |
G |
5: 135,453,717 (GRCm39) |
|
probably null |
Het |
Il36rn |
G |
T |
2: 24,167,502 (GRCm39) |
|
probably benign |
Het |
Ints2 |
A |
G |
11: 86,106,371 (GRCm39) |
|
probably null |
Het |
Khnyn |
A |
G |
14: 56,124,523 (GRCm39) |
D259G |
probably benign |
Het |
Lyst |
T |
A |
13: 13,871,346 (GRCm39) |
Y2694* |
probably null |
Het |
Map4k2 |
T |
C |
19: 6,401,346 (GRCm39) |
|
probably benign |
Het |
Marchf10 |
C |
T |
11: 105,281,065 (GRCm39) |
V407I |
probably benign |
Het |
Mast4 |
C |
A |
13: 102,874,764 (GRCm39) |
V1367F |
probably damaging |
Het |
Mrgprb3 |
A |
T |
7: 48,293,366 (GRCm39) |
S62T |
probably damaging |
Het |
Mthfd1l |
T |
C |
10: 4,039,392 (GRCm39) |
F801S |
probably damaging |
Het |
Nhsl3 |
A |
G |
4: 129,115,941 (GRCm39) |
S908P |
probably damaging |
Het |
Notch2 |
T |
C |
3: 98,031,239 (GRCm39) |
|
probably benign |
Het |
Nr2e1 |
T |
C |
10: 42,448,765 (GRCm39) |
S158G |
probably benign |
Het |
Nup214 |
A |
G |
2: 31,881,353 (GRCm39) |
I404V |
probably benign |
Het |
Or13n4 |
T |
C |
7: 106,423,404 (GRCm39) |
T110A |
probably benign |
Het |
Pik3c2g |
G |
A |
6: 139,714,436 (GRCm39) |
R196H |
|
Het |
Pik3r3 |
A |
T |
4: 116,129,955 (GRCm39) |
D213V |
probably benign |
Het |
Pip5k1b |
A |
T |
19: 24,374,501 (GRCm39) |
S27T |
possibly damaging |
Het |
Pkp1 |
G |
A |
1: 135,846,621 (GRCm39) |
Q44* |
probably null |
Het |
Pnma8b |
C |
T |
7: 16,680,968 (GRCm39) |
R651C |
unknown |
Het |
Pnpt1 |
T |
A |
11: 29,080,887 (GRCm39) |
S44T |
probably benign |
Het |
Polb |
A |
T |
8: 23,132,319 (GRCm39) |
|
probably null |
Het |
Pom121l2 |
A |
G |
13: 22,165,984 (GRCm39) |
N85S |
probably damaging |
Het |
Prim1 |
A |
G |
10: 127,853,893 (GRCm39) |
K104E |
probably damaging |
Het |
Prl8a1 |
T |
A |
13: 27,758,040 (GRCm39) |
Y223F |
probably benign |
Het |
Rbak |
T |
G |
5: 143,159,391 (GRCm39) |
H554P |
probably damaging |
Het |
Serpina3c |
T |
C |
12: 104,117,970 (GRCm39) |
R123G |
probably benign |
Het |
Sh3bp4 |
T |
G |
1: 89,073,605 (GRCm39) |
S818A |
probably damaging |
Het |
Sh3rf3 |
C |
G |
10: 58,885,270 (GRCm39) |
H384Q |
probably benign |
Het |
Sptbn4 |
T |
C |
7: 27,103,678 (GRCm39) |
E1181G |
probably benign |
Het |
Taf2 |
G |
A |
15: 54,935,402 (GRCm39) |
|
probably benign |
Het |
Taf7l2 |
A |
T |
10: 115,949,133 (GRCm39) |
I131N |
probably benign |
Het |
Tbc1d9 |
A |
T |
8: 83,976,174 (GRCm39) |
M578L |
probably benign |
Het |
Tinagl1 |
G |
T |
4: 130,066,763 (GRCm39) |
Y111* |
probably null |
Het |
Tor2a |
T |
C |
2: 32,651,697 (GRCm39) |
L304P |
probably damaging |
Het |
Trp53bp1 |
A |
G |
2: 121,067,304 (GRCm39) |
V474A |
probably benign |
Het |
Trrap |
C |
A |
5: 144,723,518 (GRCm39) |
A325E |
probably damaging |
Het |
Ube4a |
A |
G |
9: 44,859,322 (GRCm39) |
|
probably null |
Het |
Use1 |
G |
C |
8: 71,822,257 (GRCm39) |
K239N |
probably damaging |
Het |
Vps9d1 |
G |
T |
8: 123,973,563 (GRCm39) |
Q407K |
probably benign |
Het |
Zfp36l1 |
A |
T |
12: 80,156,449 (GRCm39) |
S311T |
possibly damaging |
Het |
Zfp729b |
T |
C |
13: 67,739,374 (GRCm39) |
K964E |
probably benign |
Het |
Zfp974 |
T |
A |
7: 27,610,382 (GRCm39) |
M448L |
probably benign |
Het |
Zfyve28 |
A |
T |
5: 34,374,214 (GRCm39) |
V600E |
possibly damaging |
Het |
|
Other mutations in Slc9a8 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01616:Slc9a8
|
APN |
2 |
167,266,086 (GRCm39) |
missense |
possibly damaging |
0.46 |
IGL02626:Slc9a8
|
APN |
2 |
167,309,597 (GRCm39) |
splice site |
probably benign |
|
costello
|
UTSW |
2 |
167,293,216 (GRCm39) |
missense |
probably damaging |
1.00 |
R0270:Slc9a8
|
UTSW |
2 |
167,293,216 (GRCm39) |
missense |
probably damaging |
1.00 |
R0417:Slc9a8
|
UTSW |
2 |
167,299,264 (GRCm39) |
missense |
probably benign |
0.00 |
R0504:Slc9a8
|
UTSW |
2 |
167,266,125 (GRCm39) |
missense |
probably benign |
|
R0906:Slc9a8
|
UTSW |
2 |
167,276,787 (GRCm39) |
intron |
probably benign |
|
R1216:Slc9a8
|
UTSW |
2 |
167,266,041 (GRCm39) |
missense |
probably benign |
0.00 |
R1225:Slc9a8
|
UTSW |
2 |
167,313,443 (GRCm39) |
missense |
probably benign |
0.20 |
R1604:Slc9a8
|
UTSW |
2 |
167,313,352 (GRCm39) |
missense |
probably benign |
0.09 |
R1728:Slc9a8
|
UTSW |
2 |
167,266,065 (GRCm39) |
missense |
probably benign |
0.00 |
R1729:Slc9a8
|
UTSW |
2 |
167,266,065 (GRCm39) |
missense |
probably benign |
0.00 |
R1773:Slc9a8
|
UTSW |
2 |
167,313,385 (GRCm39) |
missense |
possibly damaging |
0.57 |
R1775:Slc9a8
|
UTSW |
2 |
167,299,278 (GRCm39) |
missense |
probably benign |
0.12 |
R1918:Slc9a8
|
UTSW |
2 |
167,266,134 (GRCm39) |
missense |
possibly damaging |
0.95 |
R2312:Slc9a8
|
UTSW |
2 |
167,293,196 (GRCm39) |
missense |
probably benign |
0.01 |
R3031:Slc9a8
|
UTSW |
2 |
167,293,201 (GRCm39) |
missense |
probably damaging |
1.00 |
R3752:Slc9a8
|
UTSW |
2 |
167,299,272 (GRCm39) |
missense |
probably benign |
|
R3757:Slc9a8
|
UTSW |
2 |
167,266,050 (GRCm39) |
missense |
probably benign |
0.01 |
R4499:Slc9a8
|
UTSW |
2 |
167,266,113 (GRCm39) |
missense |
probably benign |
0.01 |
R4746:Slc9a8
|
UTSW |
2 |
167,283,090 (GRCm39) |
nonsense |
probably null |
|
R4904:Slc9a8
|
UTSW |
2 |
167,313,316 (GRCm39) |
missense |
possibly damaging |
0.51 |
R4969:Slc9a8
|
UTSW |
2 |
167,288,449 (GRCm39) |
missense |
probably benign |
0.06 |
R5395:Slc9a8
|
UTSW |
2 |
167,309,642 (GRCm39) |
missense |
probably damaging |
0.99 |
R5811:Slc9a8
|
UTSW |
2 |
167,313,307 (GRCm39) |
nonsense |
probably null |
|
R6311:Slc9a8
|
UTSW |
2 |
167,293,140 (GRCm39) |
missense |
probably damaging |
1.00 |
R6443:Slc9a8
|
UTSW |
2 |
167,276,741 (GRCm39) |
missense |
probably benign |
0.00 |
R6494:Slc9a8
|
UTSW |
2 |
167,266,211 (GRCm39) |
missense |
probably damaging |
1.00 |
R7161:Slc9a8
|
UTSW |
2 |
167,307,303 (GRCm39) |
missense |
possibly damaging |
0.90 |
R7322:Slc9a8
|
UTSW |
2 |
167,293,222 (GRCm39) |
missense |
probably damaging |
1.00 |
R7354:Slc9a8
|
UTSW |
2 |
167,316,051 (GRCm39) |
missense |
possibly damaging |
0.93 |
R7896:Slc9a8
|
UTSW |
2 |
167,307,278 (GRCm39) |
missense |
probably benign |
0.07 |
R8095:Slc9a8
|
UTSW |
2 |
167,310,891 (GRCm39) |
missense |
probably damaging |
0.99 |
R8725:Slc9a8
|
UTSW |
2 |
167,315,454 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- TAGGGAAAGTCGACTTCCGTG -3'
(R):5'- AGTGTGCTGTAGGGACCTTC -3'
Sequencing Primer
(F):5'- TGCGGCGGTGCTAGAACAG -3'
(R):5'- TGCTGTAGGGACCTTCCAGTC -3'
|
Posted On |
2017-02-28 |