Mutagenetix > Incidental Mutation

Incidental Mutation 'R5908:Zfyve28'

460772

Institutional Source

Beutler Lab

Gene Symbol

Zfyve28

Ensembl Gene

ENSMUSG00000037224

Gene Name

zinc finger, FYVE domain containing 28

Synonyms

9630058O20Rik

MMRRC Submission

044105-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5908 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

34352237-34445793 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 34374214 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 600 (V600E)

Ref Sequence

ENSEMBL: ENSMUSP00000092464 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094868]

AlphaFold

Q6ZPK7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000094868
AA Change: V600E

PolyPhen 2 Score 0.622 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000092464
Gene: ENSMUSG00000037224
AA Change: V600E

Domain	Start	End	E-Value	Type
low complexity region	718	730	N/A	INTRINSIC
FYVE	827	896	8.73e-25	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130435

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132104

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140646

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201477

Coding Region Coverage

1x: 99.8%
3x: 99.4%
10x: 97.3%
20x: 91.8%

Validation Efficiency

97% (69/71)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc10	A	T	17: 46,624,730 (GRCm39)	L198H	probably damaging	Het
Anks1	C	T	17: 28,214,993 (GRCm39)	T480I	probably damaging	Het
Arhgef18	G	A	8: 3,503,165 (GRCm39)	R857Q	probably damaging	Het
B230208B08Rik	A	G	4: 78,132,297 (GRCm39)		noncoding transcript	Het
B9d2	T	A	7: 25,382,724 (GRCm39)	W33R	probably damaging	Het
Bcl2a1c	A	G	9: 114,159,572 (GRCm39)	T117A	probably benign	Het
Btbd8	T	G	5: 107,655,460 (GRCm39)	D574E	probably damaging	Het
Cabin1	A	G	10: 75,557,366 (GRCm39)	S1091P	probably damaging	Het
Clip3	C	A	7: 29,996,298 (GRCm39)	D64E	probably damaging	Het
Col6a5	C	G	9: 105,740,000 (GRCm39)	D2540H	possibly damaging	Het
Commd5	A	T	15: 76,785,136 (GRCm39)	M178L	probably benign	Het
Crtc3	T	A	7: 80,245,542 (GRCm39)	H361L	possibly damaging	Het
Dip2b	T	A	15: 100,049,065 (GRCm39)	L153Q	possibly damaging	Het
Eif2s1	T	A	12: 78,926,817 (GRCm39)	V189D	probably damaging	Het
Etl4	C	T	2: 20,748,718 (GRCm39)	A483V	probably damaging	Het
Foxo3	T	C	10: 42,072,583 (GRCm39)	I645V	probably benign	Het
Gm4841	A	G	18: 60,403,506 (GRCm39)	S196P	possibly damaging	Het
Hip1	A	G	5: 135,453,717 (GRCm39)		probably null	Het
Il36rn	G	T	2: 24,167,502 (GRCm39)		probably benign	Het
Ints2	A	G	11: 86,106,371 (GRCm39)		probably null	Het
Khnyn	A	G	14: 56,124,523 (GRCm39)	D259G	probably benign	Het
Lyst	T	A	13: 13,871,346 (GRCm39)	Y2694*	probably null	Het
Map4k2	T	C	19: 6,401,346 (GRCm39)		probably benign	Het
Marchf10	C	T	11: 105,281,065 (GRCm39)	V407I	probably benign	Het
Mast4	C	A	13: 102,874,764 (GRCm39)	V1367F	probably damaging	Het
Mrgprb3	A	T	7: 48,293,366 (GRCm39)	S62T	probably damaging	Het
Mthfd1l	T	C	10: 4,039,392 (GRCm39)	F801S	probably damaging	Het
Nhsl3	A	G	4: 129,115,941 (GRCm39)	S908P	probably damaging	Het
Notch2	T	C	3: 98,031,239 (GRCm39)		probably benign	Het
Nr2e1	T	C	10: 42,448,765 (GRCm39)	S158G	probably benign	Het
Nup214	A	G	2: 31,881,353 (GRCm39)	I404V	probably benign	Het
Or13n4	T	C	7: 106,423,404 (GRCm39)	T110A	probably benign	Het
Pik3c2g	G	A	6: 139,714,436 (GRCm39)	R196H		Het
Pik3r3	A	T	4: 116,129,955 (GRCm39)	D213V	probably benign	Het
Pip5k1b	A	T	19: 24,374,501 (GRCm39)	S27T	possibly damaging	Het
Pkp1	G	A	1: 135,846,621 (GRCm39)	Q44*	probably null	Het
Pnma8b	C	T	7: 16,680,968 (GRCm39)	R651C	unknown	Het
Pnpt1	T	A	11: 29,080,887 (GRCm39)	S44T	probably benign	Het
Polb	A	T	8: 23,132,319 (GRCm39)		probably null	Het
Pom121l2	A	G	13: 22,165,984 (GRCm39)	N85S	probably damaging	Het
Prim1	A	G	10: 127,853,893 (GRCm39)	K104E	probably damaging	Het
Prl8a1	T	A	13: 27,758,040 (GRCm39)	Y223F	probably benign	Het
Rbak	T	G	5: 143,159,391 (GRCm39)	H554P	probably damaging	Het
Serpina3c	T	C	12: 104,117,970 (GRCm39)	R123G	probably benign	Het
Sh3bp4	T	G	1: 89,073,605 (GRCm39)	S818A	probably damaging	Het
Sh3rf3	C	G	10: 58,885,270 (GRCm39)	H384Q	probably benign	Het
Slc9a8	C	T	2: 167,293,090 (GRCm39)		probably benign	Het
Sptbn4	T	C	7: 27,103,678 (GRCm39)	E1181G	probably benign	Het
Taf2	G	A	15: 54,935,402 (GRCm39)		probably benign	Het
Taf7l2	A	T	10: 115,949,133 (GRCm39)	I131N	probably benign	Het
Tbc1d9	A	T	8: 83,976,174 (GRCm39)	M578L	probably benign	Het
Tinagl1	G	T	4: 130,066,763 (GRCm39)	Y111*	probably null	Het
Tor2a	T	C	2: 32,651,697 (GRCm39)	L304P	probably damaging	Het
Trp53bp1	A	G	2: 121,067,304 (GRCm39)	V474A	probably benign	Het
Trrap	C	A	5: 144,723,518 (GRCm39)	A325E	probably damaging	Het
Ube4a	A	G	9: 44,859,322 (GRCm39)		probably null	Het
Use1	G	C	8: 71,822,257 (GRCm39)	K239N	probably damaging	Het
Vps9d1	G	T	8: 123,973,563 (GRCm39)	Q407K	probably benign	Het
Zfp36l1	A	T	12: 80,156,449 (GRCm39)	S311T	possibly damaging	Het
Zfp729b	T	C	13: 67,739,374 (GRCm39)	K964E	probably benign	Het
Zfp974	T	A	7: 27,610,382 (GRCm39)	M448L	probably benign	Het

Other mutations in Zfyve28

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00497:Zfyve28	APN	5	34,400,539 (GRCm39)	missense	probably damaging	0.98
IGL02201:Zfyve28	APN	5	34,400,549 (GRCm39)	missense	probably damaging	1.00
PIT4418001:Zfyve28	UTSW	5	34,390,721 (GRCm39)	missense	probably damaging	1.00
R0499:Zfyve28	UTSW	5	34,389,550 (GRCm39)	missense	possibly damaging	0.65
R1226:Zfyve28	UTSW	5	34,374,408 (GRCm39)	missense	probably benign	0.00
R1290:Zfyve28	UTSW	5	34,356,145 (GRCm39)	missense	probably benign	0.00
R1351:Zfyve28	UTSW	5	34,389,549 (GRCm39)	missense	probably damaging	1.00
R1418:Zfyve28	UTSW	5	34,374,590 (GRCm39)	missense	probably damaging	0.99
R2062:Zfyve28	UTSW	5	34,391,681 (GRCm39)	missense	probably null	0.73
R2212:Zfyve28	UTSW	5	34,357,028 (GRCm39)	missense	probably benign	0.02
R2443:Zfyve28	UTSW	5	34,374,238 (GRCm39)	missense	possibly damaging	0.64
R2851:Zfyve28	UTSW	5	34,354,006 (GRCm39)	missense	probably damaging	1.00
R2852:Zfyve28	UTSW	5	34,354,006 (GRCm39)	missense	probably damaging	1.00
R3412:Zfyve28	UTSW	5	34,357,028 (GRCm39)	missense	probably benign	0.02
R3413:Zfyve28	UTSW	5	34,357,028 (GRCm39)	missense	probably benign	0.02
R3694:Zfyve28	UTSW	5	34,374,812 (GRCm39)	missense	probably damaging	1.00
R4645:Zfyve28	UTSW	5	34,379,787 (GRCm39)	intron	probably benign
R4700:Zfyve28	UTSW	5	34,375,189 (GRCm39)	missense	probably damaging	1.00
R4938:Zfyve28	UTSW	5	34,390,698 (GRCm39)	missense	probably damaging	0.99
R5384:Zfyve28	UTSW	5	34,374,311 (GRCm39)	missense	probably damaging	1.00
R5936:Zfyve28	UTSW	5	34,382,332 (GRCm39)	missense	probably damaging	1.00
R6260:Zfyve28	UTSW	5	34,356,216 (GRCm39)	missense	probably damaging	0.99
R6862:Zfyve28	UTSW	5	34,445,449 (GRCm39)	missense	probably benign	0.10
R7172:Zfyve28	UTSW	5	34,391,753 (GRCm39)	missense	probably benign	0.42
R7243:Zfyve28	UTSW	5	34,356,219 (GRCm39)	missense	probably damaging	1.00
R7366:Zfyve28	UTSW	5	34,389,571 (GRCm39)	missense	probably damaging	1.00
R7598:Zfyve28	UTSW	5	34,393,461 (GRCm39)	missense	probably damaging	1.00
R7654:Zfyve28	UTSW	5	34,400,539 (GRCm39)	missense	probably damaging	1.00
R7752:Zfyve28	UTSW	5	34,382,326 (GRCm39)	missense	probably damaging	1.00
R7861:Zfyve28	UTSW	5	34,374,487 (GRCm39)	missense	probably damaging	1.00
R7878:Zfyve28	UTSW	5	34,356,999 (GRCm39)	missense	probably damaging	1.00
R7901:Zfyve28	UTSW	5	34,382,326 (GRCm39)	missense	probably damaging	1.00
R8116:Zfyve28	UTSW	5	34,374,944 (GRCm39)	missense	probably damaging	0.96
R8483:Zfyve28	UTSW	5	34,393,480 (GRCm39)	missense	possibly damaging	0.67
R8799:Zfyve28	UTSW	5	34,390,670 (GRCm39)	missense	probably damaging	1.00
R8883:Zfyve28	UTSW	5	34,375,211 (GRCm39)	critical splice acceptor site	probably null
R8912:Zfyve28	UTSW	5	34,374,655 (GRCm39)	missense	probably benign	0.01
R9179:Zfyve28	UTSW	5	34,382,376 (GRCm39)	missense	probably benign	0.01
R9228:Zfyve28	UTSW	5	34,374,788 (GRCm39)	missense	probably benign
R9381:Zfyve28	UTSW	5	34,373,932 (GRCm39)	missense	probably benign	0.09
R9432:Zfyve28	UTSW	5	34,400,633 (GRCm39)	missense	possibly damaging	0.92
R9509:Zfyve28	UTSW	5	34,354,892 (GRCm39)	missense	probably benign	0.36

Predicted Primers

PCR Primer
(F):5'- CAACAGGTGCTGGTGTTCTGTC -3'
(R):5'- ATGGTACTTCCCCTTTGGAGC -3'

Sequencing Primer
(F):5'- TGACCACAGGGGACTTCTCAG -3'
(R):5'- TTCCCCTTTGGAGCCCAGG -3'

Posted On

2017-02-28