Mutagenetix > Incidental Mutation

Incidental Mutation 'R5910:Grin3b'

460935

Institutional Source

Beutler Lab

Gene Symbol

Grin3b

Ensembl Gene

ENSMUSG00000035745

Gene Name

glutamate receptor, ionotropic, NMDA3B

Synonyms

NR3B

MMRRC Submission

044107-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5910 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

79806549-79813024 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 79808855 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Leucine at position 202 (V202L)

Ref Sequence

ENSEMBL: ENSMUSP00000048576 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045085] [ENSMUST00000045247] [ENSMUST00000052885]

AlphaFold

Q91ZU9

Predicted Effect

probably benign
Transcript: ENSMUST00000045085
AA Change: V202L

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000048576
Gene: ENSMUSG00000035745
AA Change: V202L

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	39	60	N/A	INTRINSIC
low complexity region	217	230	N/A	INTRINSIC
PBPe	458	810	1.01e-82	SMART
Lig_chan-Glu_bd	459	522	6.6e-20	SMART
transmembrane domain	826	848	N/A	INTRINSIC
low complexity region	914	930	N/A	INTRINSIC
coiled coil region	950	984	N/A	INTRINSIC
low complexity region	989	1001	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000045247

SMART Domains

Protein: ENSMUSP00000041049
Gene: ENSMUSG00000035754

Domain	Start	End	E-Value	Type
Blast:WD40	27	66	3e-17	BLAST
WD40	70	107	1.48e1	SMART
WD40	110	149	1.24e-4	SMART
WD40	161	202	2.49e-1	SMART
WD40	205	243	2.05e1	SMART
WD40	258	297	2.32e-9	SMART
low complexity region	353	367	N/A	INTRINSIC
Pfam:WD40_alt	383	429	4.3e-26	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000052885

SMART Domains

Protein: ENSMUSP00000056792
Gene: ENSMUSG00000013858

Domain	Start	End	E-Value	Type
Pfam:Membralin	34	131	3.3e-44	PFAM
Pfam:Membralin	138	393	3.9e-130	PFAM
transmembrane domain	394	411	N/A	INTRINSIC
low complexity region	455	470	N/A	INTRINSIC
low complexity region	483	521	N/A	INTRINSIC
low complexity region	531	544	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124536

SMART Domains

Protein: ENSMUSP00000119572
Gene: ENSMUSG00000013858

Domain	Start	End	E-Value	Type
Pfam:Membralin	4	101	1.6e-44	PFAM
Pfam:Membralin	108	297	7.7e-83	PFAM
Pfam:Membralin	316	387	5e-42	PFAM
transmembrane domain	388	405	N/A	INTRINSIC
low complexity region	449	464	N/A	INTRINSIC
low complexity region	477	515	N/A	INTRINSIC
low complexity region	525	538	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124889

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126383

Predicted Effect

probably benign
Transcript: ENSMUST00000131816

SMART Domains

Protein: ENSMUSP00000122984
Gene: ENSMUSG00000035745

Domain	Start	End	E-Value	Type
Pfam:Lig_chan	1	368	2.2e-20	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132080

Predicted Effect

probably benign
Transcript: ENSMUST00000149148

SMART Domains

Protein: ENSMUSP00000116887
Gene: ENSMUSG00000035745

Domain	Start	End	E-Value	Type
PBPe	100	452	1.01e-82	SMART
Lig_chan-Glu_bd	101	164	6.6e-20	SMART
transmembrane domain	468	490	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000218515

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.8%
3x: 99.4%
10x: 97.0%
20x: 90.5%

Validation Efficiency

95% (93/98)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a subunit of an N-methyl-D-aspartate (NMDA) receptor. The encoded protein is found primarily in motor neurons, where it forms a heterotetramer with GRIN1 to create an excitatory glycine receptor. Variations in this gene have been proposed to be linked to schizophrenia. [provided by RefSeq, Nov 2015]
PHENOTYPE: Mice homozygous for a null allele show a mild impairment in motor learning or coordination, reduced home cage activity, a highly increased social interaction with familiar cagemates in their home cage but moderately increased anxiety-like behavior and reduced social interaction in a new environment. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	A	G	6: 121,645,076 (GRCm39)	N976D	probably damaging	Het
Adamts1	G	A	16: 85,599,037 (GRCm39)	R188W	probably benign	Het
Adcy4	A	T	14: 56,016,470 (GRCm39)	V327D	probably damaging	Het
Alg8	T	C	7: 97,039,493 (GRCm39)	I408T	possibly damaging	Het
Ankib1	T	C	5: 3,743,217 (GRCm39)	S933G	probably benign	Het
Ap2a2	A	G	7: 141,178,691 (GRCm39)	D106G	probably damaging	Het
Arhgap22	A	T	14: 33,088,572 (GRCm39)	H351L	probably damaging	Het
Arhgef2	A	G	3: 88,542,327 (GRCm39)	Y310C	probably damaging	Het
Atm	A	T	9: 53,359,380 (GRCm39)	S2804R	probably damaging	Het
Baz2b	A	G	2: 59,807,770 (GRCm39)	L163P	possibly damaging	Het
Bcl2l12	C	T	7: 44,645,967 (GRCm39)		probably null	Het
Cdh23	A	G	10: 60,213,600 (GRCm39)	V1495A	possibly damaging	Het
Cep78	A	G	19: 15,946,492 (GRCm39)	S447P	possibly damaging	Het
Cfap43	G	A	19: 47,768,710 (GRCm39)	T778I	possibly damaging	Het
Cfap54	A	T	10: 92,901,043 (GRCm39)	N170K	probably damaging	Het
Cmya5	A	T	13: 93,229,151 (GRCm39)	L1979Q	probably damaging	Het
Col15a1	A	T	4: 47,289,514 (GRCm39)	E846D	probably damaging	Het
Col5a1	A	G	2: 27,926,900 (GRCm39)	K308E	possibly damaging	Het
Dcst1	T	A	3: 89,257,731 (GRCm39)	T680S	possibly damaging	Het
Dsp	T	C	13: 38,376,445 (GRCm39)	L1410P	possibly damaging	Het
Edem3	T	A	1: 151,646,578 (GRCm39)		probably null	Het
Efcab3	A	T	11: 104,581,760 (GRCm39)	E34V	probably benign	Het
Eif4e2	T	A	1: 87,148,696 (GRCm39)	Y64N	probably damaging	Het
Fcgbp	C	T	7: 27,784,928 (GRCm39)		probably benign	Het
Gm7275	A	T	16: 47,893,826 (GRCm39)		noncoding transcript	Het
Gsdmc4	G	A	15: 63,767,101 (GRCm39)	S223F	possibly damaging	Het
H2bc14	A	G	13: 21,906,470 (GRCm39)	N68S	probably benign	Het
Hbp1	T	C	12: 31,987,651 (GRCm39)	H183R	probably benign	Het
Hectd3	A	G	4: 116,859,331 (GRCm39)	M652V	probably benign	Het
Hmgxb4	T	C	8: 75,726,193 (GRCm39)	F13L	probably benign	Het
Hnrnpab	T	C	11: 51,492,281 (GRCm39)	K271R	probably benign	Het
Ilvbl	A	T	10: 78,412,947 (GRCm39)	K156N	probably benign	Het
Iqce	A	T	5: 140,687,973 (GRCm39)		probably benign	Het
Itpr2	C	A	6: 146,231,069 (GRCm39)	V1194L	probably benign	Het
Kif18b	A	G	11: 102,804,370 (GRCm39)	F384L	probably benign	Het
Klf14	A	G	6: 30,934,774 (GRCm39)	Y287H	probably benign	Het
Klhl6	A	G	16: 19,775,844 (GRCm39)	M238T	probably benign	Het
Lbp	G	A	2: 158,166,477 (GRCm39)	V344I	probably benign	Het
Lrp12	T	C	15: 39,739,439 (GRCm39)		probably null	Het
Mapk7	T	A	11: 61,384,447 (GRCm39)	M1L	probably benign	Het
Muc5b	A	G	7: 141,415,048 (GRCm39)	T2665A	possibly damaging	Het
Ncln	A	T	10: 81,331,912 (GRCm39)		probably null	Het
Nfxl1	T	C	5: 72,697,708 (GRCm39)	R347G	probably benign	Het
Npnt	C	A	3: 132,612,179 (GRCm39)	C231F	probably damaging	Het
Nrap	T	A	19: 56,330,743 (GRCm39)	H1070L	probably benign	Het
Nrxn1	G	T	17: 91,011,746 (GRCm39)	Y294*	probably null	Het
Or4c126	A	G	2: 89,823,782 (GRCm39)	D15G	probably benign	Het
Or9s27	T	C	1: 92,516,429 (GRCm39)	Y126H	probably damaging	Het
Otog	A	G	7: 45,948,022 (GRCm39)	H2341R	possibly damaging	Het
Paqr3	T	C	5: 97,243,887 (GRCm39)		probably null	Het
Pcdhb11	T	C	18: 37,556,796 (GRCm39)	F709L	probably benign	Het
Phf12	G	A	11: 77,918,224 (GRCm39)	R812Q	probably damaging	Het
Polr2a	A	T	11: 69,637,696 (GRCm39)	L216Q	probably damaging	Het
Polrmt	A	G	10: 79,579,331 (GRCm39)	L140P	probably benign	Het
Pou2f3	C	T	9: 43,045,769 (GRCm39)		probably null	Het
Prkcd	A	T	14: 30,317,938 (GRCm39)	N548K	probably benign	Het
Pygb	A	G	2: 150,657,620 (GRCm39)	D361G	probably benign	Het
Rpl9	A	T	5: 65,546,044 (GRCm39)		probably benign	Het
Rubcnl	A	T	14: 75,272,912 (GRCm39)	T211S	probably benign	Het
Rusc1	C	T	3: 88,999,027 (GRCm39)	G252S	probably benign	Het
Scnn1g	A	G	7: 121,337,318 (GRCm39)	T60A	probably damaging	Het
Sipa1l2	T	G	8: 126,218,423 (GRCm39)	T305P	probably benign	Het
Slc18b1	T	A	10: 23,700,565 (GRCm39)		probably benign	Het
Sp100	G	A	1: 85,608,861 (GRCm39)		probably null	Het
Tekt5	A	T	16: 10,205,017 (GRCm39)		probably null	Het
Tlnrd1	T	A	7: 83,533,693 (GRCm39)		probably benign	Het
Tpcn1	A	G	5: 120,685,462 (GRCm39)		probably benign	Het
Tpcn2	T	C	7: 144,814,719 (GRCm39)	I461V	probably benign	Het
Traf3ip1	A	G	1: 91,455,467 (GRCm39)	K643E	probably damaging	Het
Trim33	T	C	3: 103,251,892 (GRCm39)	C914R	probably damaging	Het
Trip11	G	A	12: 101,849,738 (GRCm39)	T1442I	probably damaging	Het
Ttll6	A	G	11: 96,026,415 (GRCm39)	M107V	possibly damaging	Het
Uap1l1	A	G	2: 25,253,445 (GRCm39)		probably benign	Het
Ube3b	T	A	5: 114,553,370 (GRCm39)	I914N	possibly damaging	Het
Usp24	A	G	4: 106,237,665 (GRCm39)	T1107A	probably damaging	Het
Usp40	A	T	1: 87,896,122 (GRCm39)	C811*	probably null	Het
Vps11	T	C	9: 44,270,432 (GRCm39)		probably null	Het
Wdr91	A	T	6: 34,868,422 (GRCm39)	I433N	possibly damaging	Het
Zfp770	G	C	2: 114,026,713 (GRCm39)	S452*	probably null	Het

Other mutations in Grin3b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02754:Grin3b	APN	10	79,808,723 (GRCm39)	missense	possibly damaging	0.50
IGL03352:Grin3b	APN	10	79,809,615 (GRCm39)	missense	probably damaging	0.99
R0485:Grin3b	UTSW	10	79,809,890 (GRCm39)	missense	possibly damaging	0.68
R0927:Grin3b	UTSW	10	79,807,062 (GRCm39)	missense	probably benign	0.04
R1526:Grin3b	UTSW	10	79,810,436 (GRCm39)	missense	probably damaging	1.00
R1699:Grin3b	UTSW	10	79,811,716 (GRCm39)	missense	probably damaging	0.99
R1789:Grin3b	UTSW	10	79,809,242 (GRCm39)	missense	probably benign
R1916:Grin3b	UTSW	10	79,810,432 (GRCm39)	missense	probably damaging	1.00
R1991:Grin3b	UTSW	10	79,810,480 (GRCm39)	missense	probably damaging	1.00
R1991:Grin3b	UTSW	10	79,806,746 (GRCm39)	missense	probably benign
R4359:Grin3b	UTSW	10	79,808,731 (GRCm39)	missense	probably benign	0.00
R4817:Grin3b	UTSW	10	79,812,732 (GRCm39)	missense	probably benign	0.01
R4909:Grin3b	UTSW	10	79,812,938 (GRCm39)	makesense	probably null
R4942:Grin3b	UTSW	10	79,811,556 (GRCm39)	missense	probably damaging	0.99
R4981:Grin3b	UTSW	10	79,812,191 (GRCm39)	intron	probably benign
R5689:Grin3b	UTSW	10	79,810,465 (GRCm39)	missense	probably damaging	1.00
R6132:Grin3b	UTSW	10	79,812,274 (GRCm39)	missense	probably damaging	1.00
R6242:Grin3b	UTSW	10	79,812,013 (GRCm39)	missense	probably damaging	1.00
R6262:Grin3b	UTSW	10	79,810,203 (GRCm39)	missense	probably benign	0.38
R6336:Grin3b	UTSW	10	79,812,295 (GRCm39)	missense	probably damaging	1.00
R6942:Grin3b	UTSW	10	79,811,953 (GRCm39)	critical splice donor site	probably null
R7201:Grin3b	UTSW	10	79,809,912 (GRCm39)	missense	possibly damaging	0.96
R7322:Grin3b	UTSW	10	79,811,529 (GRCm39)	missense	probably damaging	1.00
R7526:Grin3b	UTSW	10	79,808,885 (GRCm39)	missense	probably benign
R7707:Grin3b	UTSW	10	79,811,735 (GRCm39)	missense	possibly damaging	0.89
R7980:Grin3b	UTSW	10	79,811,559 (GRCm39)	missense	possibly damaging	0.75
R8069:Grin3b	UTSW	10	79,812,868 (GRCm39)	missense	unknown
R8128:Grin3b	UTSW	10	79,812,944 (GRCm39)	missense
R8434:Grin3b	UTSW	10	79,810,422 (GRCm39)	missense	probably damaging	1.00
R8777:Grin3b	UTSW	10	79,808,972 (GRCm39)	missense	possibly damaging	0.96
R8777-TAIL:Grin3b	UTSW	10	79,808,972 (GRCm39)	missense	possibly damaging	0.96
R8848:Grin3b	UTSW	10	79,809,667 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- GATTCCTTATCAGGGTCGGG -3'
(R):5'- ACAAGCTCCACCATGTCGTG -3'

Sequencing Primer
(F):5'- TACAGAGGTGGACAGCCCTG -3'
(R):5'- CAGACCGGTTTTGGGCAG -3'

Posted On

2017-02-28