Mutagenetix > Incidental Mutation

Incidental Mutation 'R5914:Ubp1'

461212

Institutional Source

Beutler Lab

Gene Symbol

Ubp1

Ensembl Gene

ENSMUSG00000009741

Gene Name

upstream binding protein 1

Synonyms

LBP-1b, NF2d9, LBP-1a

MMRRC Submission

044111-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5914 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

113760002-113806270 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 113785807 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 161 (R161W)

Ref Sequence

ENSEMBL: ENSMUSP00000150023 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000009885] [ENSMUST00000084885] [ENSMUST00000116492] [ENSMUST00000214095] [ENSMUST00000216558]

AlphaFold

Q811S7

Predicted Effect

probably benign
Transcript: ENSMUST00000009885
AA Change: R161W

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000009885
Gene: ENSMUSG00000009741
AA Change: R161W

Domain	Start	End	E-Value	Type
Pfam:CP2	37	259	1.6e-76	PFAM
SCOP:d1kw4a_	333	381	5e-3	SMART
low complexity region	409	427	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000084885
AA Change: R161W

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000081946
Gene: ENSMUSG00000009741
AA Change: R161W

Domain	Start	End	E-Value	Type
Pfam:CP2	42	257	3e-62	PFAM
SCOP:d1kw4a_	369	417	6e-3	SMART
low complexity region	445	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000116492
AA Change: R161W

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000112192
Gene: ENSMUSG00000009741
AA Change: R161W

Domain	Start	End	E-Value	Type
Pfam:CP2	37	259	1.6e-76	PFAM
SCOP:d1kw4a_	333	381	5e-3	SMART
low complexity region	409	427	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000214095
AA Change: R161W

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Predicted Effect

probably benign
Transcript: ENSMUST00000216558
AA Change: R161W

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216891

Meta Mutation Damage Score

0.0934

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.4%
20x: 95.5%

Validation Efficiency

95% (87/92)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene die during gestation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrb1	G	A	15: 74,410,219 (GRCm39)	R286H	possibly damaging	Het
Ank3	A	T	10: 69,828,774 (GRCm39)		probably benign	Het
Arhgap24	G	A	5: 102,700,025 (GRCm39)		probably null	Het
Arhgef2	T	C	3: 88,543,176 (GRCm39)	Y396H	probably benign	Het
Asap3	G	T	4: 135,968,720 (GRCm39)	G722C	probably benign	Het
Birc2	A	C	9: 7,857,343 (GRCm39)	*377E	probably null	Het
Cdc123	G	T	2: 5,803,174 (GRCm39)	Q282K	possibly damaging	Het
Cdkl4	C	T	17: 80,855,120 (GRCm39)		probably null	Het
Cep97	T	C	16: 55,725,820 (GRCm39)	N689S	probably benign	Het
Cfap97	T	G	8: 46,634,895 (GRCm39)	S407A	probably damaging	Het
Cfh	A	T	1: 140,063,967 (GRCm39)	N436K	probably benign	Het
Chpf2	A	T	5: 24,797,421 (GRCm39)		probably benign	Het
Cnnm2	A	G	19: 46,751,616 (GRCm39)	T469A	probably benign	Het
Col6a3	T	A	1: 90,703,922 (GRCm39)	I2275F	unknown	Het
Ctdspl2	A	T	2: 121,809,414 (GRCm39)	N122Y	probably damaging	Het
Dcaf6	A	T	1: 165,178,724 (GRCm39)	C602S	probably benign	Het
Dda1	T	A	8: 71,927,294 (GRCm39)		probably benign	Het
Dixdc1	T	C	9: 50,609,888 (GRCm39)		probably benign	Het
Dnah2	C	T	11: 69,349,746 (GRCm39)	R2399Q	probably benign	Het
Emilin3	T	A	2: 160,750,990 (GRCm39)	N253I	probably damaging	Het
Epg5	T	A	18: 78,002,847 (GRCm39)		probably null	Het
Fam204a	A	T	19: 60,209,525 (GRCm39)	Y68*	probably null	Het
Fbln5	T	G	12: 101,727,002 (GRCm39)	D329A	possibly damaging	Het
Fkbp15	T	A	4: 62,246,047 (GRCm39)		probably null	Het
Fnbp4	C	G	2: 90,605,137 (GRCm39)		probably benign	Het
Foxn2	C	A	17: 88,770,138 (GRCm39)		probably null	Het
Frem1	T	C	4: 82,920,012 (GRCm39)	D448G	probably damaging	Het
Fzd9	T	C	5: 135,278,199 (GRCm39)	Y562C	probably benign	Het
Gcn1	A	G	5: 115,748,194 (GRCm39)		silent	Het
Gm6003	A	G	7: 32,864,691 (GRCm39)		noncoding transcript	Het
Gnl3	C	A	14: 30,738,853 (GRCm39)	E65D	possibly damaging	Het
Hax1	GTCATCATCATCATCATC	GTCATCATCATCATCATCATC	3: 89,905,247 (GRCm39)		probably benign	Het
Hk2	C	T	6: 82,713,615 (GRCm39)	R461K	probably benign	Het
Ice1	A	G	13: 70,754,496 (GRCm39)	F530S	possibly damaging	Het
Ing3	T	A	6: 21,968,904 (GRCm39)	S129T	probably benign	Het
Ino80	G	A	2: 119,288,697 (GRCm39)	S3L	probably damaging	Het
Ints2	T	A	11: 86,113,000 (GRCm39)	Q839H	probably benign	Het
Kcnrg	T	C	14: 61,849,280 (GRCm39)	M247T	probably benign	Het
Kpna6	T	C	4: 129,566,485 (GRCm39)		probably benign	Het
Krtap28-13	T	A	1: 83,039,044 (GRCm39)		probably benign	Het
Lgr4	T	A	2: 109,748,617 (GRCm39)	V51E	possibly damaging	Het
Map3k5	A	C	10: 19,980,001 (GRCm39)	E836D	probably benign	Het
Mapk11	T	C	15: 89,030,038 (GRCm39)	I193V	probably benign	Het
Marchf10	A	T	11: 105,276,308 (GRCm39)	V660E	probably damaging	Het
Matn4	T	C	2: 164,235,144 (GRCm39)	E435G	probably damaging	Het
Mre11a	G	T	9: 14,723,232 (GRCm39)	R402M	probably damaging	Het
Msr1	C	T	8: 40,034,868 (GRCm39)	G428R	probably damaging	Het
Ndufv3	C	T	17: 31,750,206 (GRCm39)	R99*	probably null	Het
Nkx6-1	C	T	5: 101,811,847 (GRCm39)	S85N	unknown	Het
Nop2	A	T	6: 125,111,691 (GRCm39)	E141D	probably benign	Het
Or5b3	A	G	19: 13,388,326 (GRCm39)	H131R	probably benign	Het
Or8b1	G	C	9: 38,399,657 (GRCm39)	E111Q	probably damaging	Het
Paox	T	C	7: 139,709,101 (GRCm39)	S205P	probably damaging	Het
Pcdh15	T	C	10: 74,466,768 (GRCm39)	V995A	probably benign	Het
Pdcd1	T	A	1: 93,968,550 (GRCm39)	K161N	probably benign	Het
Pfkfb2	C	A	1: 130,627,832 (GRCm39)	V372L	probably damaging	Het
Phldb1	G	A	9: 44,622,948 (GRCm39)	T19I	probably damaging	Het
Pik3c2g	G	T	6: 139,599,477 (GRCm39)	V198L	probably benign	Het
Pnpla8	T	A	12: 44,342,753 (GRCm39)	L41*	probably null	Het
Postn	C	T	3: 54,281,221 (GRCm39)	Q449*	probably null	Het
Ppp1r3a	C	T	6: 14,718,988 (GRCm39)	S642N	probably benign	Het
Ptpn23	G	A	9: 110,214,511 (GRCm39)		probably benign	Het
Ptprj	T	C	2: 90,283,684 (GRCm39)	N923S	possibly damaging	Het
Rai1	T	C	11: 60,078,630 (GRCm39)	V898A	probably benign	Het
Rasgef1a	A	T	6: 118,057,515 (GRCm39)	Y72F	possibly damaging	Het
Serpinb7	T	C	1: 107,379,580 (GRCm39)	V329A	probably damaging	Het
Slc24a4	T	A	12: 102,201,049 (GRCm39)	I311N	probably damaging	Het
Slc45a1	C	A	4: 150,713,997 (GRCm39)	L749F	possibly damaging	Het
Spon1	G	A	7: 113,630,056 (GRCm39)	D428N	probably damaging	Het
Tcf7l2	G	A	19: 55,886,992 (GRCm39)	E2K	probably benign	Het
Thoc5	A	G	11: 4,870,416 (GRCm39)	M472V	possibly damaging	Het
Tm6sf2	T	C	8: 70,528,213 (GRCm39)	Y121H	probably damaging	Het
Tmc4	T	A	7: 3,675,008 (GRCm39)	D221V	probably benign	Het
Trim30b	A	T	7: 104,006,572 (GRCm39)	S95T	probably damaging	Het
Trip12	T	C	1: 84,741,179 (GRCm39)	E571G	probably damaging	Het
Ttn	T	C	2: 76,781,656 (GRCm39)		probably null	Het
Usp21	G	A	1: 171,109,745 (GRCm39)		probably benign	Het
Vmn1r61	T	A	7: 5,613,529 (GRCm39)	R262W	probably damaging	Het
Vmn2r67	A	T	7: 84,801,044 (GRCm39)	D297E	probably damaging	Het
Vwa5a	T	C	9: 38,653,038 (GRCm39)	L784S	probably benign	Het
Vwc2	G	A	11: 11,104,244 (GRCm39)	V259M	probably damaging	Het
Zeb2	T	C	2: 44,887,064 (GRCm39)	I596M	probably benign	Het
Zgrf1	T	A	3: 127,354,672 (GRCm39)	L97H	probably damaging	Het

Other mutations in Ubp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01941:Ubp1	APN	9	113,785,826 (GRCm39)	missense	probably damaging	1.00
IGL01951:Ubp1	APN	9	113,780,686 (GRCm39)	nonsense	probably null
R0097:Ubp1	UTSW	9	113,802,575 (GRCm39)	splice site	probably benign
R0097:Ubp1	UTSW	9	113,802,575 (GRCm39)	splice site	probably benign
R0241:Ubp1	UTSW	9	113,795,655 (GRCm39)	critical splice donor site	probably null
R0669:Ubp1	UTSW	9	113,793,736 (GRCm39)	splice site	probably benign
R0709:Ubp1	UTSW	9	113,773,999 (GRCm39)	missense	probably damaging	1.00
R1416:Ubp1	UTSW	9	113,799,239 (GRCm39)	missense	probably benign	0.02
R1466:Ubp1	UTSW	9	113,773,903 (GRCm39)	splice site	probably benign
R1753:Ubp1	UTSW	9	113,785,037 (GRCm39)	missense	possibly damaging	0.74
R1780:Ubp1	UTSW	9	113,793,647 (GRCm39)	missense	possibly damaging	0.84
R2235:Ubp1	UTSW	9	113,793,712 (GRCm39)	missense	probably damaging	1.00
R3418:Ubp1	UTSW	9	113,780,754 (GRCm39)	critical splice donor site	probably null
R3978:Ubp1	UTSW	9	113,785,773 (GRCm39)	critical splice acceptor site	probably null
R4024:Ubp1	UTSW	9	113,773,951 (GRCm39)	missense	probably benign	0.03
R4469:Ubp1	UTSW	9	113,787,775 (GRCm39)	missense	probably benign	0.11
R4797:Ubp1	UTSW	9	113,785,070 (GRCm39)	missense	probably damaging	1.00
R4984:Ubp1	UTSW	9	113,788,460 (GRCm39)	missense	probably damaging	0.97
R6971:Ubp1	UTSW	9	113,801,831 (GRCm39)	missense	probably damaging	0.97
R7718:Ubp1	UTSW	9	113,802,597 (GRCm39)	missense	possibly damaging	0.69
R8129:Ubp1	UTSW	9	113,804,417 (GRCm39)	missense	possibly damaging	0.92
R8772:Ubp1	UTSW	9	113,801,897 (GRCm39)	missense	probably benign	0.23
R9106:Ubp1	UTSW	9	113,799,319 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TTGAAGACAAGGTTGACTACGG -3'
(R):5'- TTCCAGGCCATCTAAGTGGAG -3'

Sequencing Primer
(F):5'- AGGCTGCACTTGAACCCCTAG -3'
(R):5'- CTTCTAAATGAGTGGGGCA -3'

Posted On

2017-02-28