Mutagenetix > Incidental Mutation

Incidental Mutation 'R5921:Rxrg'

461551

Institutional Source

Beutler Lab

Gene Symbol

Rxrg

Ensembl Gene

ENSMUSG00000015843

Gene Name

retinoid X receptor gamma

Synonyms

Nr2b3

MMRRC Submission

044118-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.813) question?

Stock #

R5921 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

167425953-167467192 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 167466808 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 330 (M330T)

Ref Sequence

ENSEMBL: ENSMUSP00000107011 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015987] [ENSMUST00000111380] [ENSMUST00000111384] [ENSMUST00000111386]

AlphaFold

P28705

Predicted Effect

probably benign
Transcript: ENSMUST00000015987
AA Change: M453T

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000015987
Gene: ENSMUSG00000015843
AA Change: M453T

Domain	Start	End	E-Value	Type
Pfam:Nuc_recep-AF1	25	134	1.2e-39	PFAM
ZnF_C4	136	207	6.92e-39	SMART
HOLI	271	430	2.7e-50	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111380
AA Change: M330T

PolyPhen 2 Score 0.550 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000107011
Gene: ENSMUSG00000015843
AA Change: M330T

Domain	Start	End	E-Value	Type
ZnF_C4	13	84	6.92e-39	SMART
HOLI	148	307	2.7e-50	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111384
AA Change: M453T

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000107015
Gene: ENSMUSG00000015843
AA Change: M453T

Domain	Start	End	E-Value	Type
Pfam:Nuc_recep-AF1	24	134	3.4e-35	PFAM
ZnF_C4	136	207	6.92e-39	SMART
HOLI	271	430	2.7e-50	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111386
AA Change: M453T

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000107017
Gene: ENSMUSG00000015843
AA Change: M453T

Domain	Start	End	E-Value	Type
Pfam:Nuc_recep-AF1	24	134	3.4e-35	PFAM
ZnF_C4	136	207	6.92e-39	SMART
HOLI	271	430	2.7e-50	SMART

Meta Mutation Damage Score

0.0878

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.1%
20x: 94.7%

Validation Efficiency

95% (70/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the retinoid X receptor (RXR) family of nuclear receptors which are involved in mediating the antiproliferative effects of retinoic acid (RA). This receptor forms dimers with the retinoic acid, thyroid hormone, and vitamin D receptors, increasing both DNA binding and transcriptional function on their respective response elements. This gene is expressed at significantly lower levels in non-small cell lung cancer cells. Alternatively spliced transcript variants have been described. [provided by RefSeq, Jun 2010]
PHENOTYPE: Targeted disruption of exon 2 causes a 25% reduction of neurons in the striatum and may lead to premature death and altered responses to the administration of dopamine antagonists on some genetic backgrounds. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim2	G	A	5: 35,969,555 (GRCm39)	V223M	probably damaging	Het
Adamts7	T	C	9: 90,070,747 (GRCm39)	S623P	probably benign	Het
Aqp7	G	T	4: 41,036,093 (GRCm39)	N48K	probably benign	Het
Asic4	A	G	1: 75,428,017 (GRCm39)	N181S	probably benign	Het
Blvra	A	T	2: 126,929,283 (GRCm39)		probably benign	Het
Bmf	C	A	2: 118,363,034 (GRCm39)		probably benign	Het
Bnc2	A	T	4: 84,211,292 (GRCm39)	I454N	possibly damaging	Het
Catsperg1	A	T	7: 28,889,948 (GRCm39)	L700H	possibly damaging	Het
Ccdc14	T	C	16: 34,526,761 (GRCm39)	V222A	probably damaging	Het
Cfap97d2	G	T	8: 13,784,840 (GRCm39)	A34S	probably damaging	Het
Clstn3	A	T	6: 124,408,539 (GRCm39)		probably benign	Het
Col15a1	A	T	4: 47,300,602 (GRCm39)	I1066F	probably damaging	Het
Dcdc2c	T	C	12: 28,574,774 (GRCm39)	E116G	possibly damaging	Het
Dop1a	G	A	9: 86,383,975 (GRCm39)	S310N	probably damaging	Het
Dync1h1	T	A	12: 110,584,802 (GRCm39)	V735E	probably damaging	Het
Eva1a	T	C	6: 82,069,140 (GRCm39)	Y156H	probably damaging	Het
Fbxw26	A	G	9: 109,575,086 (GRCm39)	I13T	probably damaging	Het
Fermt2	A	T	14: 45,702,203 (GRCm39)	L527Q	probably damaging	Het
Fxyd4	G	A	6: 117,913,099 (GRCm39)		probably benign	Het
Gal	A	G	19: 3,460,100 (GRCm39)	S124P	probably damaging	Het
Glmp	T	C	3: 88,233,283 (GRCm39)	S56P	probably benign	Het
Gm5600	T	C	7: 113,307,413 (GRCm39)		noncoding transcript	Het
Golga2	A	G	2: 32,187,767 (GRCm39)	N194S	probably benign	Het
Gon4l	T	C	3: 88,817,254 (GRCm39)		probably benign	Het
Gtf2ird2	T	A	5: 134,246,426 (GRCm39)	Y895N	probably damaging	Het
Hsd3b1	C	A	3: 98,765,215 (GRCm39)	M22I	probably benign	Het
Ipo13	A	C	4: 117,769,286 (GRCm39)	L169V	probably benign	Het
Kif13a	G	T	13: 46,978,776 (GRCm39)	T208K	probably damaging	Het
Klhl5	G	T	5: 65,320,299 (GRCm39)	A618S	probably damaging	Het
Lrig2	A	T	3: 104,370,070 (GRCm39)	L496*	probably null	Het
Macf1	A	G	4: 123,420,504 (GRCm39)	I250T	probably benign	Het
Man1a	A	G	10: 53,783,606 (GRCm39)	I632T	probably damaging	Het
Nav2	A	G	7: 48,954,324 (GRCm39)		probably benign	Het
Nek8	A	G	11: 78,063,885 (GRCm39)	M40T	probably damaging	Het
Oas3	T	C	5: 120,908,046 (GRCm39)	D298G	probably damaging	Het
Ociad1	A	G	5: 73,467,725 (GRCm39)	D167G	probably benign	Het
Or14j4	A	T	17: 37,921,110 (GRCm39)	C177*	probably null	Het
Or8s5	T	C	15: 98,238,310 (GRCm39)	T187A	probably benign	Het
Or9s13	T	A	1: 92,548,344 (GRCm39)	S239T	probably benign	Het
Pafah2	G	T	4: 134,145,380 (GRCm39)	V255L	probably benign	Het
Pde10a	A	G	17: 9,149,369 (GRCm39)	Y407C	probably damaging	Het
Pirb	A	C	7: 3,719,693 (GRCm39)	Y484*	probably null	Het
Prl8a6	A	G	13: 27,621,171 (GRCm39)	S20P	probably damaging	Het
R3hdm4	A	T	10: 79,749,453 (GRCm39)	V52E	probably damaging	Het
Rab3ip	A	G	10: 116,775,152 (GRCm39)	Y69H	probably damaging	Het
Sema4g	G	T	19: 44,987,143 (GRCm39)	G460V	probably benign	Het
Sidt1	T	C	16: 44,094,098 (GRCm39)		probably benign	Het
Slc12a2	T	A	18: 58,065,595 (GRCm39)	D943E	probably benign	Het
Slc12a4	T	C	8: 106,671,876 (GRCm39)		probably null	Het
Slc4a3	T	G	1: 75,534,088 (GRCm39)		probably null	Het
Slc4a8	C	T	15: 100,712,328 (GRCm39)		probably benign	Het
Srcap	T	A	7: 127,158,005 (GRCm39)		probably benign	Het
Stk39	A	G	2: 68,196,449 (GRCm39)	S327P	probably damaging	Het
Tbc1d5	G	A	17: 51,270,721 (GRCm39)	T170M	probably damaging	Het
Trim13	T	A	14: 61,842,538 (GRCm39)	F185Y	probably benign	Het
Ttc17	A	G	2: 94,209,193 (GRCm39)	V87A	probably damaging	Het
Ttn	A	T	2: 76,551,207 (GRCm39)	M31395K	possibly damaging	Het
Usp34	T	A	11: 23,414,686 (GRCm39)	D2876E	probably damaging	Het
Uvssa	T	C	5: 33,547,096 (GRCm39)	S221P	probably benign	Het
Vmn2r93	T	A	17: 18,546,030 (GRCm39)	L634Q	probably damaging	Het
Vmp1	C	T	11: 86,477,336 (GRCm39)	A355T	probably benign	Het
Xpo5	A	T	17: 46,532,347 (GRCm39)	M461L	probably benign	Het
Zfp759	T	A	13: 67,288,558 (GRCm39)	F703Y	probably damaging	Het

Other mutations in Rxrg

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00818:Rxrg	APN	1	167,454,857 (GRCm39)	splice site	probably benign
IGL01767:Rxrg	APN	1	167,454,884 (GRCm39)	missense	probably damaging	1.00
IGL02126:Rxrg	APN	1	167,462,029 (GRCm39)	missense	probably damaging	0.98
IGL03144:Rxrg	APN	1	167,426,327 (GRCm39)	missense	possibly damaging	0.53
gamma	UTSW	1	167,466,808 (GRCm39)	missense	possibly damaging	0.55
Xray	UTSW	1	167,458,788 (GRCm39)	splice site	probably benign
R0482:Rxrg	UTSW	1	167,458,606 (GRCm39)	missense	possibly damaging	0.94
R0548:Rxrg	UTSW	1	167,458,788 (GRCm39)	splice site	probably benign
R0734:Rxrg	UTSW	1	167,455,013 (GRCm39)	missense	probably damaging	1.00
R1294:Rxrg	UTSW	1	167,441,470 (GRCm39)	missense	probably benign
R1843:Rxrg	UTSW	1	167,426,321 (GRCm39)	start codon destroyed	probably benign	0.02
R2093:Rxrg	UTSW	1	167,454,893 (GRCm39)	missense	probably damaging	1.00
R2972:Rxrg	UTSW	1	167,466,715 (GRCm39)	missense	probably damaging	1.00
R2974:Rxrg	UTSW	1	167,466,715 (GRCm39)	missense	probably damaging	1.00
R3177:Rxrg	UTSW	1	167,463,269 (GRCm39)	missense	possibly damaging	0.64
R3277:Rxrg	UTSW	1	167,463,269 (GRCm39)	missense	possibly damaging	0.64
R4484:Rxrg	UTSW	1	167,452,596 (GRCm39)	missense	probably benign	0.03
R4721:Rxrg	UTSW	1	167,452,621 (GRCm39)	missense	probably damaging	1.00
R5267:Rxrg	UTSW	1	167,463,335 (GRCm39)	missense	probably damaging	0.98
R5323:Rxrg	UTSW	1	167,452,573 (GRCm39)	missense	probably benign
R5858:Rxrg	UTSW	1	167,454,925 (GRCm39)	missense	probably damaging	1.00
R6142:Rxrg	UTSW	1	167,460,191 (GRCm39)	missense	possibly damaging	0.69
R6370:Rxrg	UTSW	1	167,462,006 (GRCm39)	missense	probably damaging	1.00
R6595:Rxrg	UTSW	1	167,454,905 (GRCm39)	missense	probably damaging	1.00
R6702:Rxrg	UTSW	1	167,441,374 (GRCm39)	missense	probably benign
R7133:Rxrg	UTSW	1	167,458,678 (GRCm39)	missense	probably benign	0.00
R7934:Rxrg	UTSW	1	167,454,927 (GRCm39)	missense	probably damaging	0.97
R8984:Rxrg	UTSW	1	167,462,005 (GRCm39)	missense	possibly damaging	0.91
R9340:Rxrg	UTSW	1	167,458,890 (GRCm39)	missense	possibly damaging	0.61

Predicted Primers

PCR Primer
(F):5'- TAGAGACCCATCAGGCAGTCTC -3'
(R):5'- GCCACCTTTAACAGCCGTAC -3'

Sequencing Primer
(F):5'- CGACAGTAGGTGTGTTTCT -3'
(R):5'- CCACCTAGAAAAGTCTCATGTGTAG -3'

Posted On

2017-02-28