Incidental Mutation 'R5933:Usp29'
ID 462015
Institutional Source Beutler Lab
Gene Symbol Usp29
Ensembl Gene ENSMUSG00000051527
Gene Name ubiquitin specific peptidase 29
Synonyms Ocat
MMRRC Submission 044127-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5933 (G1)
Quality Score 225
Status Validated
Chromosome 7
Chromosomal Location 6733577-6970218 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 6964744 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Serine at position 196 (T196S)
Ref Sequence ENSEMBL: ENSMUSP00000143769 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000054055] [ENSMUST00000197117] [ENSMUST00000198068] [ENSMUST00000200535]
AlphaFold Q9ES63
Predicted Effect probably benign
Transcript: ENSMUST00000054055
AA Change: T196S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000062349
Gene: ENSMUSG00000051527
AA Change: T196S

DomainStartEndE-ValueType
Pfam:UCH_N 1 107 6.1e-37 PFAM
low complexity region 162 179 N/A INTRINSIC
low complexity region 200 214 N/A INTRINSIC
Pfam:UCH 288 823 6.1e-53 PFAM
Pfam:UCH_1 289 615 2.3e-16 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000197117
AA Change: T196S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000143283
Gene: ENSMUSG00000051527
AA Change: T196S

DomainStartEndE-ValueType
PDB:3U12|B 11 73 3e-7 PDB
low complexity region 82 95 N/A INTRINSIC
low complexity region 169 186 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000198068
AA Change: T196S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000143267
Gene: ENSMUSG00000051527
AA Change: T196S

DomainStartEndE-ValueType
PDB:3U12|B 11 123 3e-6 PDB
low complexity region 169 186 N/A INTRINSIC
low complexity region 207 221 N/A INTRINSIC
Pfam:UCH 295 830 7.9e-52 PFAM
Pfam:UCH_1 296 626 9.6e-16 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000200535
AA Change: T196S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000143769
Gene: ENSMUSG00000051527
AA Change: T196S

DomainStartEndE-ValueType
Pfam:UCH_N 8 114 8.3e-34 PFAM
low complexity region 169 186 N/A INTRINSIC
low complexity region 207 221 N/A INTRINSIC
Pfam:UCH 295 830 2.8e-51 PFAM
Pfam:UCH_1 296 622 1.1e-14 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203365
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204486
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 95.1%
Validation Efficiency 94% (99/105)
Allele List at MGI
Other mutations in this stock
Total: 93 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik C T 3: 137,776,109 (GRCm39) P1766L probably damaging Het
Abca13 A G 11: 9,199,658 (GRCm39) Q119R possibly damaging Het
Acot11 C T 4: 106,617,327 (GRCm39) G240R probably damaging Het
Aipl1 A C 11: 71,921,108 (GRCm39) C237G probably benign Het
Ankdd1a C T 9: 65,416,978 (GRCm39) A154T probably benign Het
Arglu1 T C 8: 8,740,047 (GRCm39) S91G probably benign Het
Arhgef33 C A 17: 80,644,709 (GRCm39) H13N probably benign Het
Atp1a4 A G 1: 172,059,841 (GRCm39) I796T possibly damaging Het
Birc6 C G 17: 74,906,232 (GRCm39) S1374R probably damaging Het
Birc6 T A 17: 74,906,233 (GRCm39) S72T probably damaging Het
Bmpr1b T C 3: 141,577,128 (GRCm39) *59W probably null Het
Btbd16 A T 7: 130,386,011 (GRCm39) Q63L probably damaging Het
Cacna1c C T 6: 118,589,541 (GRCm39) R1592H probably damaging Het
Caps2 G A 10: 112,051,351 (GRCm39) E541K probably benign Het
Card9 T C 2: 26,242,509 (GRCm39) E500G probably damaging Het
Carnmt1 T C 19: 18,681,469 (GRCm39) V396A probably benign Het
Ccnl1 T A 3: 65,855,763 (GRCm39) K320M probably damaging Het
Cdh20 A C 1: 104,912,396 (GRCm39) D550A probably damaging Het
Cdhr1 T A 14: 36,811,419 (GRCm39) T231S probably benign Het
Cenpe T C 3: 134,967,389 (GRCm39) V2177A probably benign Het
Cfap69 A G 5: 5,690,183 (GRCm39) C161R probably damaging Het
Ctsd C T 7: 141,930,316 (GRCm39) V403I probably benign Het
Cyth1 C T 11: 118,076,585 (GRCm39) probably null Het
Dazl A T 17: 50,594,781 (GRCm39) probably null Het
Disp3 A T 4: 148,325,770 (GRCm39) C1329* probably null Het
Dld C T 12: 31,383,982 (GRCm39) V374I probably benign Het
Dnah7c T C 1: 46,558,375 (GRCm39) Y494H probably damaging Het
Dnttip2 T A 3: 122,069,217 (GRCm39) M144K probably benign Het
Drc1 A T 5: 30,502,873 (GRCm39) D132V probably damaging Het
Enpp6 A G 8: 47,519,039 (GRCm39) D269G probably benign Het
Ephx4 T A 5: 107,551,631 (GRCm39) probably null Het
Evl T C 12: 108,649,516 (GRCm39) S345P possibly damaging Het
Fam193a A T 5: 34,623,024 (GRCm39) D1204V probably damaging Het
Fat2 A T 11: 55,174,877 (GRCm39) D1945E probably damaging Het
Fat4 T C 3: 39,005,524 (GRCm39) probably null Het
Fbln7 A T 2: 128,719,418 (GRCm39) M72L probably benign Het
Flnc T C 6: 29,441,105 (GRCm39) V353A probably damaging Het
Fry T C 5: 150,314,265 (GRCm39) probably benign Het
Galnt14 A T 17: 73,833,300 (GRCm39) C225S probably benign Het
Gapvd1 T C 2: 34,574,303 (GRCm39) S1265G probably benign Het
Gm13030 A G 4: 138,598,515 (GRCm39) F136S unknown Het
Gucy1a1 T C 3: 82,002,114 (GRCm39) H655R probably damaging Het
Hk1 A G 10: 62,105,773 (GRCm39) L890P probably damaging Het
Igfn1 T A 1: 135,898,341 (GRCm39) R742* probably null Het
Igkv12-49 T C 6: 69,693,553 (GRCm39) noncoding transcript Het
Igkv2-109 T A 6: 68,279,965 (GRCm39) L62Q possibly damaging Het
Itgb3 A G 11: 104,528,805 (GRCm39) T311A possibly damaging Het
Kl A G 5: 150,912,948 (GRCm39) E899G probably damaging Het
Kyat3 A T 3: 142,429,021 (GRCm39) D151V probably damaging Het
Morc2b A T 17: 33,357,583 (GRCm39) M63K possibly damaging Het
Mtbp T A 15: 55,434,723 (GRCm39) F298L possibly damaging Het
Mtmr3 C T 11: 4,448,951 (GRCm39) V272I probably benign Het
Muc4 A G 16: 32,574,480 (GRCm39) T977A probably benign Het
Nebl G A 2: 17,408,998 (GRCm39) H367Y probably benign Het
Nop58 T A 1: 59,743,824 (GRCm39) Y274* probably null Het
Nuak1 T A 10: 84,210,666 (GRCm39) Q474L probably damaging Het
Obscn A G 11: 58,889,331 (GRCm39) S7523P unknown Het
Oosp3 T A 19: 11,682,753 (GRCm39) D140E probably benign Het
Or52z15 T A 7: 103,332,680 (GRCm39) C242S probably damaging Het
Padi2 G A 4: 140,644,952 (GRCm39) R62H probably benign Het
Patl1 A G 19: 11,917,136 (GRCm39) N661S probably benign Het
Pcyox1l G T 18: 61,831,544 (GRCm39) N238K probably benign Het
Pmch A G 10: 87,927,011 (GRCm39) T5A probably benign Het
Polr3h A G 15: 81,800,835 (GRCm39) L169P probably damaging Het
Ptpn4 A G 1: 119,615,453 (GRCm39) V567A probably damaging Het
Rasgrp2 T G 19: 6,452,543 (GRCm39) F39V probably damaging Het
Setd1b G A 5: 123,296,815 (GRCm39) probably benign Het
Sh3glb2 A T 2: 30,240,401 (GRCm39) probably null Het
Slc46a3 A T 5: 147,830,700 (GRCm39) N44K probably benign Het
Slc9b1 T A 3: 135,099,756 (GRCm39) N425K probably benign Het
Slfn14 A T 11: 83,170,288 (GRCm39) V452E probably damaging Het
Slfn8 A T 11: 82,894,161 (GRCm39) M826K probably benign Het
Slit3 G A 11: 35,520,578 (GRCm39) V572M probably benign Het
Smr3a C A 5: 88,155,873 (GRCm39) probably null Het
Snap29 T C 16: 17,224,194 (GRCm39) S70P probably damaging Het
Svopl T A 6: 37,993,949 (GRCm39) probably benign Het
Tbc1d17 A T 7: 44,494,761 (GRCm39) F186I probably damaging Het
Tgm6 T C 2: 129,983,176 (GRCm39) V255A probably damaging Het
Tjp1 G T 7: 64,952,600 (GRCm39) T1498K probably benign Het
Tkfc C A 19: 10,574,711 (GRCm39) E176D probably benign Het
Tmem102 C T 11: 69,694,506 (GRCm39) V489I probably damaging Het
Ttn A G 2: 76,551,781 (GRCm39) V22930A probably damaging Het
Tyms A T 5: 30,278,357 (GRCm39) probably null Het
Uaca T A 9: 60,748,238 (GRCm39) D67E probably damaging Het
Unc119b G A 5: 115,265,508 (GRCm39) probably benign Het
Usp37 A G 1: 74,525,141 (GRCm39) S228P probably damaging Het
Usp42 C A 5: 143,701,270 (GRCm39) A918S probably benign Het
Vmn2r72 T A 7: 85,387,058 (GRCm39) L835F probably benign Het
Vps13a T C 19: 16,637,894 (GRCm39) T2396A probably benign Het
Whrn A T 4: 63,412,945 (GRCm39) S176T probably damaging Het
Zbtb42 T C 12: 112,647,055 (GRCm39) F410S probably damaging Het
Zfp616 T C 11: 73,973,952 (GRCm39) S74P probably damaging Het
Zswim6 A G 13: 107,880,642 (GRCm39) noncoding transcript Het
Other mutations in Usp29
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00659:Usp29 APN 7 6,965,281 (GRCm39) missense probably benign 0.06
IGL01588:Usp29 APN 7 6,965,610 (GRCm39) missense probably benign 0.33
IGL02032:Usp29 APN 7 6,965,017 (GRCm39) missense probably benign 0.41
IGL02052:Usp29 APN 7 6,965,525 (GRCm39) missense probably benign 0.06
IGL02331:Usp29 APN 7 6,965,155 (GRCm39) missense probably benign 0.16
IGL02551:Usp29 APN 7 6,966,352 (GRCm39) splice site probably null
IGL02573:Usp29 APN 7 6,965,617 (GRCm39) splice site probably null
IGL02894:Usp29 APN 7 6,964,633 (GRCm39) missense probably benign 0.00
R0029:Usp29 UTSW 7 6,964,580 (GRCm39) missense probably damaging 0.99
R0142:Usp29 UTSW 7 6,965,334 (GRCm39) missense probably benign 0.12
R0452:Usp29 UTSW 7 6,966,181 (GRCm39) missense possibly damaging 0.82
R0680:Usp29 UTSW 7 6,965,884 (GRCm39) missense possibly damaging 0.92
R1161:Usp29 UTSW 7 6,964,529 (GRCm39) missense probably damaging 1.00
R2391:Usp29 UTSW 7 6,966,770 (GRCm39) splice site probably null
R3104:Usp29 UTSW 7 6,965,052 (GRCm39) nonsense probably null
R4119:Usp29 UTSW 7 6,965,805 (GRCm39) missense probably benign 0.03
R4490:Usp29 UTSW 7 6,964,949 (GRCm39) missense possibly damaging 0.68
R4598:Usp29 UTSW 7 6,965,479 (GRCm39) missense probably benign 0.06
R4606:Usp29 UTSW 7 6,966,356 (GRCm39) splice site probably null
R4670:Usp29 UTSW 7 6,965,914 (GRCm39) missense possibly damaging 0.91
R4777:Usp29 UTSW 7 6,965,747 (GRCm39) missense probably benign 0.07
R4783:Usp29 UTSW 7 6,964,390 (GRCm39) missense probably damaging 1.00
R4785:Usp29 UTSW 7 6,964,390 (GRCm39) missense probably damaging 1.00
R4896:Usp29 UTSW 7 6,965,158 (GRCm39) missense probably benign 0.29
R4915:Usp29 UTSW 7 6,964,504 (GRCm39) missense probably benign
R4944:Usp29 UTSW 7 6,964,927 (GRCm39) missense possibly damaging 0.92
R5004:Usp29 UTSW 7 6,965,158 (GRCm39) missense probably benign 0.29
R5171:Usp29 UTSW 7 6,965,074 (GRCm39) missense probably damaging 0.99
R5268:Usp29 UTSW 7 6,964,583 (GRCm39) missense probably damaging 0.98
R5572:Usp29 UTSW 7 6,965,191 (GRCm39) missense probably benign 0.12
R6694:Usp29 UTSW 7 6,965,276 (GRCm39) missense probably benign 0.03
R7389:Usp29 UTSW 7 6,966,457 (GRCm39) missense possibly damaging 0.82
R7446:Usp29 UTSW 7 6,964,219 (GRCm39) missense possibly damaging 0.93
R7447:Usp29 UTSW 7 6,964,219 (GRCm39) missense possibly damaging 0.93
R7535:Usp29 UTSW 7 6,964,219 (GRCm39) missense possibly damaging 0.93
R7537:Usp29 UTSW 7 6,964,219 (GRCm39) missense possibly damaging 0.93
R8081:Usp29 UTSW 7 6,966,629 (GRCm39) missense probably benign 0.02
R8233:Usp29 UTSW 7 6,965,406 (GRCm39) missense probably benign 0.12
R8703:Usp29 UTSW 7 6,964,321 (GRCm39) missense probably benign 0.32
R8725:Usp29 UTSW 7 6,965,917 (GRCm39) missense probably damaging 0.98
R8727:Usp29 UTSW 7 6,965,917 (GRCm39) missense probably damaging 0.98
R8844:Usp29 UTSW 7 6,964,891 (GRCm39) missense probably benign 0.02
R9173:Usp29 UTSW 7 6,964,636 (GRCm39) missense possibly damaging 0.92
R9616:Usp29 UTSW 7 6,966,179 (GRCm39) missense possibly damaging 0.91
R9623:Usp29 UTSW 7 6,964,396 (GRCm39) missense possibly damaging 0.60
Predicted Primers PCR Primer
(F):5'- ATGACCTTGAAAGCAGTGATCC -3'
(R):5'- GCGATTGGAAGGATAGTGCC -3'

Sequencing Primer
(F):5'- AAAGCAGTGATCCATTTTGCGG -3'
(R):5'- ATAGTGCCATCCAGGTTAGC -3'
Posted On 2017-02-28