Mutagenetix > Incidental Mutation

Incidental Mutation 'R5936:Slc25a54'

462241

Institutional Source

Beutler Lab

Gene Symbol

Slc25a54

Ensembl Gene

ENSMUSG00000027880

Gene Name

solute carrier family 25, member 54

Synonyms

4930443G12Rik, SCaMC-1like

MMRRC Submission

044130-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.153) question?

Stock #

R5936 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

108987815-109023898 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 109005954 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Arginine at position 154 (H154R)

Ref Sequence

ENSEMBL: ENSMUSP00000029478 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029478] [ENSMUST00000159926]

AlphaFold

B1AUS6

Predicted Effect

possibly damaging
Transcript: ENSMUST00000029478
AA Change: H154R

PolyPhen 2 Score 0.877 (Sensitivity: 0.83; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000029478
Gene: ENSMUSG00000027880
AA Change: H154R

Domain	Start	End	E-Value	Type
EFh	23	51	4.28e0	SMART
EFh	59	87	3.82e0	SMART
EFh	90	118	4.12e-3	SMART
EFh	126	154	3.44e1	SMART
Pfam:Mito_carr	191	283	3.7e-25	PFAM
Pfam:Mito_carr	284	376	7.2e-24	PFAM
Pfam:Mito_carr	383	472	2.6e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159926

SMART Domains

Protein: ENSMUSP00000124484
Gene: ENSMUSG00000027880

Domain	Start	End	E-Value	Type
Blast:EFh	1	21	6e-9	BLAST
Pfam:Mito_carr	57	150	3.2e-26	PFAM
Pfam:Mito_carr	151	243	3.6e-25	PFAM
Pfam:Mito_carr	249	339	1.5e-16	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.7%
20x: 93.0%

Validation Efficiency

91% (77/85)

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933409G03Rik	A	T	2: 68,445,848 (GRCm39)		probably benign	Het
Acnat2	T	C	4: 49,383,362 (GRCm39)	T64A	probably benign	Het
Afap1	A	G	5: 36,131,740 (GRCm39)	N356D	possibly damaging	Het
Ahi1	A	G	10: 20,841,832 (GRCm39)	D301G	probably damaging	Het
Alpk2	G	A	18: 65,483,591 (GRCm39)	T139M	probably damaging	Het
Ankrd46	T	C	15: 36,479,428 (GRCm39)	D221G	probably benign	Het
Ano6	T	A	15: 95,870,482 (GRCm39)	L900H	probably damaging	Het
Asphd2	G	A	5: 112,533,623 (GRCm39)	R343*	probably null	Het
Atosa	T	C	9: 74,916,586 (GRCm39)	L395P	probably benign	Het
Brdt	A	G	5: 107,507,261 (GRCm39)	T554A	probably damaging	Het
Cacna1d	A	G	14: 29,893,271 (GRCm39)	V401A	possibly damaging	Het
Cbs	T	C	17: 31,844,068 (GRCm39)	T188A	probably damaging	Het
Cfap54	T	A	10: 92,798,274 (GRCm39)	T1662S	probably benign	Het
Chka	A	G	19: 3,934,580 (GRCm39)	I205V	probably benign	Het
Chsy1	T	A	7: 65,822,025 (GRCm39)	N753K	possibly damaging	Het
Cpz	A	G	5: 35,659,987 (GRCm39)	S553P	probably benign	Het
Crtac1	A	G	19: 42,312,276 (GRCm39)	Y146H	probably damaging	Het
Csf1r	A	T	18: 61,258,880 (GRCm39)	I700F	probably damaging	Het
Ddx20	C	A	3: 105,587,903 (GRCm39)	E392D	possibly damaging	Het
Dhrs11	G	T	11: 84,716,350 (GRCm39)	Y67*	probably null	Het
Diaph3	G	T	14: 87,009,552 (GRCm39)	Q1076K	possibly damaging	Het
Dop1a	T	A	9: 86,418,565 (GRCm39)	L2037*	probably null	Het
Dst	G	T	1: 34,346,539 (GRCm39)	V5336L	probably damaging	Het
Etv1	C	A	12: 38,885,209 (GRCm39)	H248Q	probably damaging	Het
Fcgbp	T	C	7: 27,786,117 (GRCm39)	V518A	probably damaging	Het
Fchsd2	T	C	7: 100,840,908 (GRCm39)	L139S	probably damaging	Het
Fer	A	T	17: 64,231,058 (GRCm39)	T270S	probably benign	Het
Fgd5	A	G	6: 91,964,892 (GRCm39)	E375G	probably damaging	Het
Firrm	T	G	1: 163,814,581 (GRCm39)	I121L	probably benign	Het
Gabarapl1	T	A	6: 129,515,566 (GRCm39)	I68N	probably benign	Het
Gopc	C	T	10: 52,222,295 (GRCm39)	V30M	probably damaging	Het
Hbp1	T	C	12: 31,987,095 (GRCm39)		probably null	Het
Helz2	A	G	2: 180,872,560 (GRCm39)	V2480A	probably damaging	Het
Igfbp3	T	A	11: 7,159,472 (GRCm39)	Y247F	probably damaging	Het
Kbtbd11	C	A	8: 15,077,534 (GRCm39)	S44R	probably benign	Het
Kcnk10	G	T	12: 98,456,191 (GRCm39)	S213R	probably benign	Het
Kcnq3	T	A	15: 65,871,959 (GRCm39)	D570V	probably damaging	Het
Kif21a	A	G	15: 90,819,850 (GRCm39)	F1594S	possibly damaging	Het
Klf3	A	G	5: 64,980,303 (GRCm39)	D31G	probably damaging	Het
Mapkapk3	T	C	9: 107,166,369 (GRCm39)	K59E	probably damaging	Het
Myo18a	A	G	11: 77,709,039 (GRCm39)	T484A	probably damaging	Het
Nlrp6	T	A	7: 140,502,725 (GRCm39)	L277*	probably null	Het
Nr5a1	G	T	2: 38,591,790 (GRCm39)		probably benign	Het
Nsmaf	C	T	4: 6,421,017 (GRCm39)		probably benign	Het
Or4f58	T	A	2: 111,851,932 (GRCm39)	H89L	probably benign	Het
Orc1	A	G	4: 108,459,180 (GRCm39)	T450A	probably benign	Het
Pacsin1	A	T	17: 27,923,971 (GRCm39)	I122F	probably benign	Het
Pced1b	T	A	15: 97,283,061 (GRCm39)	Y367N	possibly damaging	Het
Pced1b	T	A	15: 97,283,063 (GRCm39)	Y367*	probably null	Het
Pdpk1	A	G	17: 24,312,203 (GRCm39)	F281L	probably damaging	Het
Piwil1	T	C	5: 128,828,142 (GRCm39)	V714A	probably benign	Het
Plcd3	C	T	11: 102,969,173 (GRCm39)	V265M	probably damaging	Het
Ppp1r1c	A	T	2: 79,586,798 (GRCm39)	E48V	possibly damaging	Het
Prl2b1	T	G	13: 27,572,432 (GRCm39)	T53P	probably damaging	Het
Ptch2	T	G	4: 116,965,491 (GRCm39)	F359V	probably benign	Het
R3hdm2	G	A	10: 127,307,681 (GRCm39)	S314N	probably damaging	Het
Rictor	A	T	15: 6,813,642 (GRCm39)	S1043C	probably damaging	Het
Rtn4rl2	A	T	2: 84,710,775 (GRCm39)	L163Q	probably damaging	Het
Sarnp	T	A	10: 128,684,640 (GRCm39)	S129T	probably benign	Het
Scube3	A	T	17: 28,384,461 (GRCm39)	K585M	probably damaging	Het
Sgk3	C	T	1: 9,956,045 (GRCm39)		probably benign	Het
Skint6	C	T	4: 112,953,790 (GRCm39)	S458N	probably benign	Het
Sorbs1	A	C	19: 40,313,216 (GRCm39)	I690S	probably damaging	Het
Sqle	C	A	15: 59,202,678 (GRCm39)	A512D	probably damaging	Het
Tedc2	A	C	17: 24,435,315 (GRCm39)	L358R	probably damaging	Het
Tfr2	A	G	5: 137,585,268 (GRCm39)	S767G	probably benign	Het
Thoc5	A	G	11: 4,854,133 (GRCm39)	E27G	probably damaging	Het
Trappc8	A	T	18: 21,007,745 (GRCm39)	F123L	probably damaging	Het
Ube3d	C	T	9: 86,254,512 (GRCm39)	G323D	probably benign	Het
Unc13c	T	A	9: 73,485,774 (GRCm39)	H1642L	probably damaging	Het
Vmn1r10	A	T	6: 57,091,302 (GRCm39)	H298L	probably benign	Het
Xpo4	A	T	14: 57,880,956 (GRCm39)	Y26N	probably benign	Het
Zer1	A	G	2: 29,997,679 (GRCm39)	L409P	probably damaging	Het
Zfyve28	A	T	5: 34,382,332 (GRCm39)	L256Q	probably damaging	Het
Zgrf1	A	G	3: 127,355,902 (GRCm39)	E376G	possibly damaging	Het

Other mutations in Slc25a54

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00843:Slc25a54	APN	3	109,020,176 (GRCm39)	missense	possibly damaging	0.76
IGL02635:Slc25a54	APN	3	109,020,133 (GRCm39)	missense	possibly damaging	0.71
IGL02944:Slc25a54	APN	3	108,987,931 (GRCm39)	missense	probably benign	0.14
IGL02987:Slc25a54	APN	3	109,023,653 (GRCm39)	missense	probably benign
IGL03346:Slc25a54	APN	3	108,993,046 (GRCm39)	intron	probably benign
R0491:Slc25a54	UTSW	3	109,010,112 (GRCm39)	missense	probably damaging	1.00
R0520:Slc25a54	UTSW	3	109,014,546 (GRCm39)	splice site	probably benign
R0645:Slc25a54	UTSW	3	109,019,481 (GRCm39)	missense	possibly damaging	0.70
R1803:Slc25a54	UTSW	3	109,010,013 (GRCm39)	missense	probably benign
R1869:Slc25a54	UTSW	3	108,987,932 (GRCm39)	nonsense	probably null
R1870:Slc25a54	UTSW	3	108,987,932 (GRCm39)	nonsense	probably null
R3024:Slc25a54	UTSW	3	108,987,982 (GRCm39)	missense	probably damaging	1.00
R3763:Slc25a54	UTSW	3	109,019,370 (GRCm39)	missense	probably damaging	1.00
R3930:Slc25a54	UTSW	3	109,023,820 (GRCm39)	missense	probably benign	0.03
R3941:Slc25a54	UTSW	3	109,019,479 (GRCm39)	missense	probably damaging	1.00
R4346:Slc25a54	UTSW	3	109,010,055 (GRCm39)	missense	possibly damaging	0.52
R4347:Slc25a54	UTSW	3	109,010,055 (GRCm39)	missense	possibly damaging	0.52
R4445:Slc25a54	UTSW	3	109,005,984 (GRCm39)	missense	probably benign	0.00
R4735:Slc25a54	UTSW	3	109,005,923 (GRCm39)	missense	probably damaging	0.96
R4914:Slc25a54	UTSW	3	109,018,395 (GRCm39)	missense	probably benign	0.34
R4960:Slc25a54	UTSW	3	109,020,132 (GRCm39)	missense	possibly damaging	0.95
R5052:Slc25a54	UTSW	3	109,010,016 (GRCm39)	missense	probably benign	0.03
R5106:Slc25a54	UTSW	3	109,020,180 (GRCm39)	missense	probably benign	0.02
R5806:Slc25a54	UTSW	3	108,987,894 (GRCm39)	missense	probably benign
R6511:Slc25a54	UTSW	3	109,001,572 (GRCm39)	missense	possibly damaging	0.92
R6532:Slc25a54	UTSW	3	109,019,368 (GRCm39)	missense	probably damaging	1.00
R6879:Slc25a54	UTSW	3	109,020,150 (GRCm39)	missense	possibly damaging	0.94
R7139:Slc25a54	UTSW	3	109,005,905 (GRCm39)	missense	probably damaging	1.00
R7179:Slc25a54	UTSW	3	109,014,573 (GRCm39)	missense	probably benign	0.00
R7282:Slc25a54	UTSW	3	109,023,817 (GRCm39)	nonsense	probably null
R7336:Slc25a54	UTSW	3	109,023,751 (GRCm39)	missense	probably benign	0.00
R7355:Slc25a54	UTSW	3	109,010,085 (GRCm39)	missense	probably damaging	1.00
R7713:Slc25a54	UTSW	3	109,010,133 (GRCm39)	missense	probably damaging	0.99
R8061:Slc25a54	UTSW	3	109,018,361 (GRCm39)	missense	probably damaging	1.00
R8282:Slc25a54	UTSW	3	109,006,005 (GRCm39)	critical splice donor site	probably null
R9095:Slc25a54	UTSW	3	109,019,404 (GRCm39)	missense	probably benign	0.09
R9156:Slc25a54	UTSW	3	109,001,548 (GRCm39)	missense	probably benign	0.03
R9568:Slc25a54	UTSW	3	109,005,932 (GRCm39)	missense	probably damaging	1.00
Z1176:Slc25a54	UTSW	3	109,019,434 (GRCm39)	frame shift	probably null
Z1177:Slc25a54	UTSW	3	109,010,113 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCATGAAGTCCAAAAGAATGGC -3'
(R):5'- ACATAGAGTGGGTCGTTTTAGTAAG -3'

Sequencing Primer
(F):5'- TCCAAAAGAATGGCTTCAGGAAC -3'
(R):5'- TCACATAAAACACTACTTGTCCTTC -3'

Posted On

2017-02-28