Mutagenetix > Incidental Mutation

Incidental Mutation 'R5936:Brdt'

462252

Institutional Source

Beutler Lab

Gene Symbol

Brdt

Ensembl Gene

ENSMUSG00000029279

Gene Name

bromodomain, testis-specific

Synonyms

7420412D09Rik, Brd6, Fsrg3

MMRRC Submission

044130-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5936 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

107479025-107534924 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 107507261 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 554 (T554A)

Ref Sequence

ENSEMBL: ENSMUSP00000031215 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031215]

AlphaFold

Q91Y44

PDB Structure

Structure of Brdt bromodomain 2 bound to an acetylated histone H3 peptide [X-RAY DIFFRACTION]
Structure of Brdt bromodomain BD1 bound to a diacetylated histone H4 peptide. [X-RAY DIFFRACTION]

Predicted Effect

probably damaging
Transcript: ENSMUST00000031215
AA Change: T554A

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000031215
Gene: ENSMUSG00000029279
AA Change: T554A

Domain	Start	End	E-Value	Type
BROMO	24	134	2.7e-45	SMART
BROMO	268	377	2.18e-40	SMART
low complexity region	392	417	N/A	INTRINSIC
low complexity region	446	455	N/A	INTRINSIC
low complexity region	472	500	N/A	INTRINSIC
Pfam:BET	505	569	9.2e-34	PFAM
low complexity region	585	603	N/A	INTRINSIC
low complexity region	649	691	N/A	INTRINSIC
low complexity region	895	909	N/A	INTRINSIC
Pfam:BRD4_CDT	913	956	3e-26	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162804

Meta Mutation Damage Score

0.1111

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.7%
20x: 93.0%

Validation Efficiency

91% (77/85)

MGI Phenotype

FUNCTION: The protein encoded by this gene belongs to the BET protein family. BET proteins have two N-terminal bromodomains and one C-terminal extraterminal domain (ET domain). BET proteins regulate chromatin reorganization via binding to acetylated histones. This gene is thought to play a role in the transcriptional regulation of spermatogenesis. Although referred to as testis-specific bromodomain (Brdt) protein, RT-PCR indicates that this gene is expressed in both mouse oocytes and testes. Alternative splicing results in multiple transcript variants encoding different proteins. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous inactivation of this genes leads to arrest of spermatogenesis and male infertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933409G03Rik	A	T	2: 68,445,848 (GRCm39)		probably benign	Het
Acnat2	T	C	4: 49,383,362 (GRCm39)	T64A	probably benign	Het
Afap1	A	G	5: 36,131,740 (GRCm39)	N356D	possibly damaging	Het
Ahi1	A	G	10: 20,841,832 (GRCm39)	D301G	probably damaging	Het
Alpk2	G	A	18: 65,483,591 (GRCm39)	T139M	probably damaging	Het
Ankrd46	T	C	15: 36,479,428 (GRCm39)	D221G	probably benign	Het
Ano6	T	A	15: 95,870,482 (GRCm39)	L900H	probably damaging	Het
Asphd2	G	A	5: 112,533,623 (GRCm39)	R343*	probably null	Het
Atosa	T	C	9: 74,916,586 (GRCm39)	L395P	probably benign	Het
Cacna1d	A	G	14: 29,893,271 (GRCm39)	V401A	possibly damaging	Het
Cbs	T	C	17: 31,844,068 (GRCm39)	T188A	probably damaging	Het
Cfap54	T	A	10: 92,798,274 (GRCm39)	T1662S	probably benign	Het
Chka	A	G	19: 3,934,580 (GRCm39)	I205V	probably benign	Het
Chsy1	T	A	7: 65,822,025 (GRCm39)	N753K	possibly damaging	Het
Cpz	A	G	5: 35,659,987 (GRCm39)	S553P	probably benign	Het
Crtac1	A	G	19: 42,312,276 (GRCm39)	Y146H	probably damaging	Het
Csf1r	A	T	18: 61,258,880 (GRCm39)	I700F	probably damaging	Het
Ddx20	C	A	3: 105,587,903 (GRCm39)	E392D	possibly damaging	Het
Dhrs11	G	T	11: 84,716,350 (GRCm39)	Y67*	probably null	Het
Diaph3	G	T	14: 87,009,552 (GRCm39)	Q1076K	possibly damaging	Het
Dop1a	T	A	9: 86,418,565 (GRCm39)	L2037*	probably null	Het
Dst	G	T	1: 34,346,539 (GRCm39)	V5336L	probably damaging	Het
Etv1	C	A	12: 38,885,209 (GRCm39)	H248Q	probably damaging	Het
Fcgbp	T	C	7: 27,786,117 (GRCm39)	V518A	probably damaging	Het
Fchsd2	T	C	7: 100,840,908 (GRCm39)	L139S	probably damaging	Het
Fer	A	T	17: 64,231,058 (GRCm39)	T270S	probably benign	Het
Fgd5	A	G	6: 91,964,892 (GRCm39)	E375G	probably damaging	Het
Firrm	T	G	1: 163,814,581 (GRCm39)	I121L	probably benign	Het
Gabarapl1	T	A	6: 129,515,566 (GRCm39)	I68N	probably benign	Het
Gopc	C	T	10: 52,222,295 (GRCm39)	V30M	probably damaging	Het
Hbp1	T	C	12: 31,987,095 (GRCm39)		probably null	Het
Helz2	A	G	2: 180,872,560 (GRCm39)	V2480A	probably damaging	Het
Igfbp3	T	A	11: 7,159,472 (GRCm39)	Y247F	probably damaging	Het
Kbtbd11	C	A	8: 15,077,534 (GRCm39)	S44R	probably benign	Het
Kcnk10	G	T	12: 98,456,191 (GRCm39)	S213R	probably benign	Het
Kcnq3	T	A	15: 65,871,959 (GRCm39)	D570V	probably damaging	Het
Kif21a	A	G	15: 90,819,850 (GRCm39)	F1594S	possibly damaging	Het
Klf3	A	G	5: 64,980,303 (GRCm39)	D31G	probably damaging	Het
Mapkapk3	T	C	9: 107,166,369 (GRCm39)	K59E	probably damaging	Het
Myo18a	A	G	11: 77,709,039 (GRCm39)	T484A	probably damaging	Het
Nlrp6	T	A	7: 140,502,725 (GRCm39)	L277*	probably null	Het
Nr5a1	G	T	2: 38,591,790 (GRCm39)		probably benign	Het
Nsmaf	C	T	4: 6,421,017 (GRCm39)		probably benign	Het
Or4f58	T	A	2: 111,851,932 (GRCm39)	H89L	probably benign	Het
Orc1	A	G	4: 108,459,180 (GRCm39)	T450A	probably benign	Het
Pacsin1	A	T	17: 27,923,971 (GRCm39)	I122F	probably benign	Het
Pced1b	T	A	15: 97,283,061 (GRCm39)	Y367N	possibly damaging	Het
Pced1b	T	A	15: 97,283,063 (GRCm39)	Y367*	probably null	Het
Pdpk1	A	G	17: 24,312,203 (GRCm39)	F281L	probably damaging	Het
Piwil1	T	C	5: 128,828,142 (GRCm39)	V714A	probably benign	Het
Plcd3	C	T	11: 102,969,173 (GRCm39)	V265M	probably damaging	Het
Ppp1r1c	A	T	2: 79,586,798 (GRCm39)	E48V	possibly damaging	Het
Prl2b1	T	G	13: 27,572,432 (GRCm39)	T53P	probably damaging	Het
Ptch2	T	G	4: 116,965,491 (GRCm39)	F359V	probably benign	Het
R3hdm2	G	A	10: 127,307,681 (GRCm39)	S314N	probably damaging	Het
Rictor	A	T	15: 6,813,642 (GRCm39)	S1043C	probably damaging	Het
Rtn4rl2	A	T	2: 84,710,775 (GRCm39)	L163Q	probably damaging	Het
Sarnp	T	A	10: 128,684,640 (GRCm39)	S129T	probably benign	Het
Scube3	A	T	17: 28,384,461 (GRCm39)	K585M	probably damaging	Het
Sgk3	C	T	1: 9,956,045 (GRCm39)		probably benign	Het
Skint6	C	T	4: 112,953,790 (GRCm39)	S458N	probably benign	Het
Slc25a54	A	G	3: 109,005,954 (GRCm39)	H154R	possibly damaging	Het
Sorbs1	A	C	19: 40,313,216 (GRCm39)	I690S	probably damaging	Het
Sqle	C	A	15: 59,202,678 (GRCm39)	A512D	probably damaging	Het
Tedc2	A	C	17: 24,435,315 (GRCm39)	L358R	probably damaging	Het
Tfr2	A	G	5: 137,585,268 (GRCm39)	S767G	probably benign	Het
Thoc5	A	G	11: 4,854,133 (GRCm39)	E27G	probably damaging	Het
Trappc8	A	T	18: 21,007,745 (GRCm39)	F123L	probably damaging	Het
Ube3d	C	T	9: 86,254,512 (GRCm39)	G323D	probably benign	Het
Unc13c	T	A	9: 73,485,774 (GRCm39)	H1642L	probably damaging	Het
Vmn1r10	A	T	6: 57,091,302 (GRCm39)	H298L	probably benign	Het
Xpo4	A	T	14: 57,880,956 (GRCm39)	Y26N	probably benign	Het
Zer1	A	G	2: 29,997,679 (GRCm39)	L409P	probably damaging	Het
Zfyve28	A	T	5: 34,382,332 (GRCm39)	L256Q	probably damaging	Het
Zgrf1	A	G	3: 127,355,902 (GRCm39)	E376G	possibly damaging	Het

Other mutations in Brdt

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02342:Brdt	APN	5	107,490,069 (GRCm39)	missense	probably damaging	1.00
IGL02718:Brdt	APN	5	107,497,934 (GRCm39)	splice site	probably benign
IGL02746:Brdt	APN	5	107,518,190 (GRCm39)	missense	probably benign
IGL02851:Brdt	APN	5	107,525,861 (GRCm39)	missense	possibly damaging	0.47
R0585:Brdt	UTSW	5	107,504,748 (GRCm39)	critical splice donor site	probably null
R0708:Brdt	UTSW	5	107,506,766 (GRCm39)	nonsense	probably null
R1338:Brdt	UTSW	5	107,498,054 (GRCm39)	missense	probably benign	0.02
R1710:Brdt	UTSW	5	107,491,450 (GRCm39)	missense	probably damaging	1.00
R1794:Brdt	UTSW	5	107,507,719 (GRCm39)	small deletion	probably benign
R1861:Brdt	UTSW	5	107,507,324 (GRCm39)	missense	probably benign
R1913:Brdt	UTSW	5	107,496,479 (GRCm39)	missense	probably benign
R2029:Brdt	UTSW	5	107,507,090 (GRCm39)	missense	probably benign	0.35
R2431:Brdt	UTSW	5	107,525,881 (GRCm39)	splice site	probably null
R3121:Brdt	UTSW	5	107,525,011 (GRCm39)	missense	probably damaging	0.99
R3122:Brdt	UTSW	5	107,525,011 (GRCm39)	missense	probably damaging	0.99
R4258:Brdt	UTSW	5	107,507,775 (GRCm39)	missense	probably damaging	0.97
R4609:Brdt	UTSW	5	107,507,802 (GRCm39)	missense	probably benign	0.00
R5306:Brdt	UTSW	5	107,493,010 (GRCm39)	missense	probably damaging	1.00
R5640:Brdt	UTSW	5	107,507,174 (GRCm39)	nonsense	probably null
R5677:Brdt	UTSW	5	107,496,483 (GRCm39)	missense	possibly damaging	0.85
R6145:Brdt	UTSW	5	107,525,865 (GRCm39)	missense	possibly damaging	0.67
R6261:Brdt	UTSW	5	107,496,369 (GRCm39)	missense	probably benign	0.04
R6408:Brdt	UTSW	5	107,533,358 (GRCm39)	missense	probably damaging	1.00
R6930:Brdt	UTSW	5	107,507,081 (GRCm39)	missense	probably benign	0.35
R7372:Brdt	UTSW	5	107,518,160 (GRCm39)	missense	possibly damaging	0.49
R7741:Brdt	UTSW	5	107,506,752 (GRCm39)	missense	probably benign	0.00
R7842:Brdt	UTSW	5	107,496,454 (GRCm39)	missense	possibly damaging	0.49
R7869:Brdt	UTSW	5	107,518,045 (GRCm39)	missense	probably benign	0.04
R7887:Brdt	UTSW	5	107,507,799 (GRCm39)	missense	possibly damaging	0.66
R7972:Brdt	UTSW	5	107,496,415 (GRCm39)	missense	possibly damaging	0.53
R8064:Brdt	UTSW	5	107,525,862 (GRCm39)	nonsense	probably null
R8958:Brdt	UTSW	5	107,525,877 (GRCm39)	missense	probably benign
R9199:Brdt	UTSW	5	107,498,029 (GRCm39)	nonsense	probably null
R9346:Brdt	UTSW	5	107,524,880 (GRCm39)	missense	probably damaging	0.99
X0011:Brdt	UTSW	5	107,524,958 (GRCm39)	missense	probably damaging	1.00
X0011:Brdt	UTSW	5	107,489,994 (GRCm39)	missense	probably damaging	0.96
Z1176:Brdt	UTSW	5	107,507,764 (GRCm39)	missense	possibly damaging	0.70

Predicted Primers

PCR Primer
(F):5'- AAGAAGCCGCTTTTGAAATCG -3'
(R):5'- GCTCCTCCTTAGACCTGACAAC -3'

Sequencing Primer
(F):5'- TCGGAAGAGGAAGACAATGC -3'
(R):5'- ACAACCTTCTTTGCTGTGAGAG -3'

Posted On

2017-02-28