Incidental Mutation 'R0568:Lrrc3'
ID 46268
Institutional Source Beutler Lab
Gene Symbol Lrrc3
Ensembl Gene ENSMUSG00000051652
Gene Name leucine rich repeat containing 3
Synonyms
MMRRC Submission 038759-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock # R0568 (G1)
Quality Score 172
Status Validated
Chromosome 10
Chromosomal Location 77897575-77902536 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to A at 77901585 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Tryptophan at position 6 (R6W)
Ref Sequence ENSEMBL: ENSMUSP00000059570 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057608]
AlphaFold P59034
Predicted Effect probably damaging
Transcript: ENSMUST00000057608
AA Change: R6W

PolyPhen 2 Score 0.964 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000059570
Gene: ENSMUSG00000051652
AA Change: R6W

DomainStartEndE-ValueType
LRRNT 32 68 6.53e-9 SMART
LRR 67 86 7.17e1 SMART
LRR_TYP 87 110 1.87e-5 SMART
LRR 113 135 2.14e0 SMART
Blast:LRRCT 145 197 7e-10 BLAST
transmembrane domain 204 226 N/A INTRINSIC
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.4%
  • 10x: 96.5%
  • 20x: 93.4%
Validation Efficiency 100% (38/38)
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1810043G02Rik C T 10: 77,983,038 T181I possibly damaging Het
1810043G02Rik A T 10: 77,984,547 *250C probably null Het
Acnat1 G A 4: 49,451,003 T36I possibly damaging Het
Adamts20 T C 15: 94,291,713 probably benign Het
Adamtsl1 T C 4: 86,418,552 L1558S probably damaging Het
Ap3b2 A G 7: 81,464,629 probably null Het
Bag2 T C 1: 33,746,978 M88V probably benign Het
Brms1l A G 12: 55,861,388 probably null Het
C8b A G 4: 104,793,380 I462V probably benign Het
Cnpy4 A G 5: 138,192,577 E167G probably damaging Het
Copa T C 1: 172,112,137 V624A possibly damaging Het
Gm4553 G T 7: 142,165,620 P24T unknown Het
Gna12 A G 5: 140,760,883 V269A possibly damaging Het
Gtf2ird2 G T 5: 134,211,242 E302* probably null Het
Hmcn2 C A 2: 31,415,236 S3140R probably benign Het
Hspa4 A G 11: 53,262,876 probably benign Het
Hspbp1 A T 7: 4,684,432 L60* probably null Het
Lats1 A T 10: 7,712,528 I970F possibly damaging Het
Lipo3 T C 19: 33,582,042 probably benign Het
Lxn C T 3: 67,461,002 A143T probably damaging Het
Mga T C 2: 119,935,422 I1390T probably damaging Het
Ncapg2 T A 12: 116,423,215 I286N probably damaging Het
Olfr1212 T A 2: 88,959,043 Y192* probably null Het
Papd4 A G 13: 93,154,992 S381P probably benign Het
Pitpnm2 A G 5: 124,140,517 probably benign Het
Plxna2 T C 1: 194,751,386 V581A probably benign Het
Polr3d A T 14: 70,439,519 H378Q possibly damaging Het
Ptpn13 T C 5: 103,489,765 V173A probably damaging Het
Rbpms2 ACTGCTGCTGCTGCTGC ACTGCTGCTGCTGCTGCTGC 9: 65,651,666 probably benign Het
Smc4 T C 3: 69,022,461 probably null Het
Snrnp40 C G 4: 130,378,043 probably null Het
Syngr3 C T 17: 24,686,581 A140T probably benign Het
Tprn T C 2: 25,264,321 V545A probably damaging Het
Trim66 T C 7: 109,460,695 H828R probably benign Het
Ugt2b5 G A 5: 87,137,365 probably benign Het
Vps9d1 A G 8: 123,246,748 V432A probably damaging Het
Zswim9 A T 7: 13,261,026 D401E probably damaging Het
Other mutations in Lrrc3
AlleleSourceChrCoordTypePredicted EffectPPH Score
R1169:Lrrc3 UTSW 10 77900930 missense probably damaging 1.00
R4660:Lrrc3 UTSW 10 77894032 unclassified probably benign
R4915:Lrrc3 UTSW 10 77901419 missense probably benign 0.37
R4917:Lrrc3 UTSW 10 77901419 missense probably benign 0.37
R5439:Lrrc3 UTSW 10 77901465 missense probably benign 0.00
R6217:Lrrc3 UTSW 10 77901009 missense probably benign 0.00
R6921:Lrrc3 UTSW 10 77901032 missense probably damaging 0.99
R7024:Lrrc3 UTSW 10 77900991 missense probably damaging 1.00
R8387:Lrrc3 UTSW 10 77901512 missense possibly damaging 0.64
R8498:Lrrc3 UTSW 10 77900990 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGGCGTCTAGTTTCAGAAGCACC -3'
(R):5'- CCTGCCTCAAACCTGATATGCCTAC -3'

Sequencing Primer
(F):5'- AGTTTCAGAAGCACCGTGTC -3'
(R):5'- TCAAACCTGATATGCCTACGATTC -3'
Posted On 2013-06-11