Incidental Mutation 'R0573:Gm5422'
ID 46536
Institutional Source Beutler Lab
Gene Symbol Gm5422
Ensembl Gene ENSMUSG00000039684
Gene Name predicted pseudogene 5422
Synonyms
MMRRC Submission 038763-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.915) question?
Stock # R0573 (G1)
Quality Score 225
Status Not validated
Chromosome 10
Chromosomal Location 31124133-31127039 bp(+) (GRCm39)
Type of Mutation exon
DNA Base Change (assembly) T to A at 31126156 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s):
AlphaFold no structure available at present
Predicted Effect noncoding transcript
Transcript: ENSMUST00000050717
SMART Domains Protein: ENSMUSP00000135967
Gene: ENSMUSG00000039684

DomainStartEndE-ValueType
low complexity region 44 61 N/A INTRINSIC
Pfam:PC_rep 438 474 6.8e-9 PFAM
Pfam:PC_rep 475 509 1.1e-8 PFAM
SCOP:d1gw5a_ 603 760 4e-4 SMART
PDB:4CR4|Z 648 901 1e-50 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000216161
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 96.9%
  • 20x: 94.5%
Validation Efficiency 97% (60/62)
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam6b A T 12: 113,455,278 (GRCm39) K698N possibly damaging Het
Adcy8 A T 15: 64,694,044 (GRCm39) V411D probably damaging Het
Arfgef3 T A 10: 18,475,036 (GRCm39) E1550V probably damaging Het
Asb3 T A 11: 31,011,406 (GRCm39) I306K probably damaging Het
Asic4 T A 1: 75,445,746 (GRCm39) probably benign Het
Basp1 G T 15: 25,364,948 (GRCm39) D16E unknown Het
Cbll1 A T 12: 31,540,539 (GRCm39) I123N probably damaging Het
Ccdc141 A T 2: 76,869,837 (GRCm39) H889Q probably benign Het
Ccdc65 T C 15: 98,618,930 (GRCm39) V303A probably benign Het
Ceacam20 T A 7: 19,720,593 (GRCm39) M60K probably damaging Het
Chd9 T A 8: 91,725,223 (GRCm39) V711D probably damaging Het
Clcn1 T A 6: 42,289,979 (GRCm39) probably null Het
Col16a1 A T 4: 129,962,268 (GRCm39) probably benign Het
Col4a3 C A 1: 82,694,084 (GRCm39) P1568Q possibly damaging Het
Colec12 C A 18: 9,858,650 (GRCm39) P478T probably damaging Het
Dchs1 T C 7: 105,407,985 (GRCm39) H1949R probably damaging Het
Dgka A G 10: 128,572,876 (GRCm39) probably null Het
Dlgap4 A G 2: 156,588,111 (GRCm39) I669V probably benign Het
Dsg1c T A 18: 20,412,298 (GRCm39) D543E probably benign Het
Egflam A T 15: 7,271,906 (GRCm39) C677* probably null Het
Eml5 A C 12: 98,791,031 (GRCm39) probably null Het
Fbn1 G A 2: 125,231,169 (GRCm39) R466C probably damaging Het
Fnbp1 C A 2: 30,948,990 (GRCm39) D198Y probably damaging Het
Gfra3 T A 18: 34,824,668 (GRCm39) M272L probably benign Het
Gpr21 T A 2: 37,407,556 (GRCm39) I34N probably damaging Het
Hspb2 G T 9: 50,662,664 (GRCm39) T155K probably benign Het
Il21r A G 7: 125,224,457 (GRCm39) T24A probably benign Het
Mmadhc T A 2: 50,182,847 (GRCm39) H43L possibly damaging Het
Morn1 T A 4: 155,195,473 (GRCm39) D278E possibly damaging Het
Myoc T C 1: 162,476,243 (GRCm39) Y316H probably damaging Het
Nags A G 11: 102,037,805 (GRCm39) D266G probably damaging Het
Nlrp4b A G 7: 10,448,142 (GRCm39) N115S probably benign Het
Nlrp5 T A 7: 23,117,056 (GRCm39) I260N probably damaging Het
Obscn G A 11: 58,926,905 (GRCm39) R6190C probably damaging Het
Or5b24 T C 19: 12,912,624 (GRCm39) V174A possibly damaging Het
Or5be3 A G 2: 86,863,812 (GRCm39) F251S probably damaging Het
Orc4 C T 2: 48,807,285 (GRCm39) M215I probably benign Het
Osbpl6 A T 2: 76,420,735 (GRCm39) H770L probably damaging Het
Otogl A C 10: 107,616,849 (GRCm39) N1809K probably benign Het
Pde3a G T 6: 141,437,957 (GRCm39) V1009L probably damaging Het
Pign T C 1: 105,580,902 (GRCm39) Y159C probably damaging Het
Pik3cg C A 12: 32,247,196 (GRCm39) M842I probably damaging Het
Pnliprp1 C T 19: 58,723,314 (GRCm39) T235I possibly damaging Het
Pramel17 A C 4: 101,692,611 (GRCm39) V463G probably damaging Het
Prpf8 A G 11: 75,381,480 (GRCm39) N239D probably damaging Het
Psd2 T A 18: 36,113,546 (GRCm39) probably benign Het
Ptprt T C 2: 161,393,668 (GRCm39) D1251G probably damaging Het
Pwp2 G A 10: 78,018,520 (GRCm39) S88L probably benign Het
Rassf4 C T 6: 116,624,516 (GRCm39) probably benign Het
Rexo1 A G 10: 80,380,684 (GRCm39) S884P probably damaging Het
Rgs20 C A 1: 5,091,037 (GRCm39) R131L possibly damaging Het
Setd4 A G 16: 93,386,834 (GRCm39) V288A probably benign Het
Stx3 G T 19: 11,763,110 (GRCm39) T160K probably damaging Het
Tas2r102 T A 6: 132,739,636 (GRCm39) S181R probably damaging Het
Tenm3 T C 8: 49,127,434 (GRCm39) probably benign Het
Tmem33 T C 5: 67,421,603 (GRCm39) probably benign Het
Trim33 A G 3: 103,259,306 (GRCm39) probably benign Het
Trip11 A G 12: 101,853,119 (GRCm39) I491T probably benign Het
Trp53bp1 A G 2: 121,058,653 (GRCm39) probably benign Het
Tuba4a T C 1: 75,193,017 (GRCm39) D199G probably benign Het
Zcchc4 A G 5: 52,953,321 (GRCm39) Y110C probably damaging Het
Zp2 C T 7: 119,734,693 (GRCm39) probably benign Het
Other mutations in Gm5422
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01306:Gm5422 APN 10 31,125,432 (GRCm39) exon noncoding transcript
IGL01569:Gm5422 APN 10 31,125,897 (GRCm39) exon noncoding transcript
IGL01645:Gm5422 APN 10 31,126,069 (GRCm39) exon noncoding transcript
IGL02273:Gm5422 APN 10 31,126,003 (GRCm39) exon noncoding transcript
IGL02603:Gm5422 APN 10 31,125,436 (GRCm39) exon noncoding transcript
IGL02928:Gm5422 APN 10 31,126,250 (GRCm39) exon noncoding transcript
IGL03003:Gm5422 APN 10 31,126,840 (GRCm39) exon noncoding transcript
IGL03274:Gm5422 APN 10 31,126,348 (GRCm39) exon noncoding transcript
IGL03297:Gm5422 APN 10 31,125,727 (GRCm39) exon noncoding transcript
ANU23:Gm5422 UTSW 10 31,125,432 (GRCm39) exon noncoding transcript
R0010:Gm5422 UTSW 10 31,125,750 (GRCm39) exon noncoding transcript
R0506:Gm5422 UTSW 10 31,126,318 (GRCm39) exon noncoding transcript
R0560:Gm5422 UTSW 10 31,125,240 (GRCm39) exon noncoding transcript
R0652:Gm5422 UTSW 10 31,125,277 (GRCm39) exon noncoding transcript
R1210:Gm5422 UTSW 10 31,126,719 (GRCm39) intron noncoding transcript
R1259:Gm5422 UTSW 10 31,125,111 (GRCm39) exon noncoding transcript
R1352:Gm5422 UTSW 10 31,126,731 (GRCm39) intron noncoding transcript
R1631:Gm5422 UTSW 10 31,125,802 (GRCm39) exon noncoding transcript
R1707:Gm5422 UTSW 10 31,124,458 (GRCm39) exon noncoding transcript
R1893:Gm5422 UTSW 10 31,125,609 (GRCm39) exon noncoding transcript
R2011:Gm5422 UTSW 10 31,124,764 (GRCm39) exon noncoding transcript
R2132:Gm5422 UTSW 10 31,124,929 (GRCm39) exon noncoding transcript
R3427:Gm5422 UTSW 10 31,124,842 (GRCm39) exon noncoding transcript
R3772:Gm5422 UTSW 10 31,124,510 (GRCm39) exon noncoding transcript
R4703:Gm5422 UTSW 10 31,125,608 (GRCm39) exon noncoding transcript
R5539:Gm5422 UTSW 10 31,124,646 (GRCm39) exon noncoding transcript
R5603:Gm5422 UTSW 10 31,126,840 (GRCm39) exon noncoding transcript
R5660:Gm5422 UTSW 10 31,126,048 (GRCm39) exon noncoding transcript
R6124:Gm5422 UTSW 10 31,125,396 (GRCm39) exon noncoding transcript
R6178:Gm5422 UTSW 10 31,125,688 (GRCm39) exon noncoding transcript
R8263:Gm5422 UTSW 10 31,125,099 (GRCm39) missense noncoding transcript
Predicted Primers PCR Primer
(F):5'- AAGGCGAAGCTATTGAGGCCATC -3'
(R):5'- TGCAGCCAGACGGGCATTATTG -3'

Sequencing Primer
(F):5'- CAACACCCTGGTGGATGTATG -3'
(R):5'- CCATGCTCATAGCAAAGATGGAG -3'
Posted On 2013-06-11