Incidental Mutation 'R5959:Lpcat4'
ID471329
Institutional Source Beutler Lab
Gene Symbol Lpcat4
Ensembl Gene ENSMUSG00000027134
Gene Namelysophosphatidylcholine acyltransferase 4
SynonymsAytl3, LPEAT2, Agpat7
MMRRC Submission 044146-MU
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.886) question?
Stock #R5959 (G1)
Quality Score170
Status Not validated
Chromosome2
Chromosomal Location112239468-112247111 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 112240035 bp
ZygosityHeterozygous
Amino Acid Change Leucine to Histidine at position 31 (L31H)
Ref Sequence ENSEMBL: ENSMUSP00000028554 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028554]
Predicted Effect possibly damaging
Transcript: ENSMUST00000028554
AA Change: L31H

PolyPhen 2 Score 0.878 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000028554
Gene: ENSMUSG00000027134
AA Change: L31H

DomainStartEndE-ValueType
transmembrane domain 40 62 N/A INTRINSIC
low complexity region 92 113 N/A INTRINSIC
PlsC 123 234 5.73e-24 SMART
low complexity region 411 422 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129503
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132314
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136219
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.3%
  • 20x: 94.6%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Members of the 1-acylglycerol-3-phosphate O-acyltransferase (EC 2.3.1.51) family, such as AGPAT7, catalyze the conversion of lysophosphatidic acid (LPA) to phosphatidic acid (PA), a precursor in the biosynthesis of all glycerolipids. Both LPA and PA are involved in signal transduction (Ye et al., 2005 [PubMed 16243729]).[supplied by OMIM, May 2008]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acaca A T 11: 84,215,966 N164Y probably damaging Het
Acp6 A G 3: 97,166,572 E164G probably damaging Het
Adcy5 A T 16: 35,298,410 I1044F probably damaging Het
Ahcyl2 A G 6: 29,886,174 D363G probably damaging Het
Ankrd28 T C 14: 31,729,922 T273A probably benign Het
Cc2d1a A T 8: 84,133,503 Y862* probably null Het
Cfap221 T A 1: 119,932,781 H705L probably damaging Het
Cfap61 C T 2: 145,947,133 T19M probably benign Het
Chga T C 12: 102,561,855 S202P probably benign Het
Cnmd T C 14: 79,656,669 I93V probably damaging Het
Cpne1 G A 2: 156,078,223 S188L probably benign Het
Dchs2 G A 3: 83,325,418 V2237I probably benign Het
Dguok C T 6: 83,490,592 R91H probably benign Het
Eed A G 7: 89,969,627 I193T probably damaging Het
Fasn C T 11: 120,808,564 E2353K probably damaging Het
Fpr-rs7 G A 17: 20,113,749 H160Y probably benign Het
Gm12394 T A 4: 42,793,492 K213N probably damaging Het
Gramd4 T A 15: 86,127,557 M272K probably damaging Het
Hfm1 A G 5: 106,874,917 S940P probably damaging Het
Ifnlr1 T A 4: 135,705,341 S363T possibly damaging Het
Jak3 A G 8: 71,682,071 N481D probably damaging Het
Kcnj3 A G 2: 55,437,318 K40E probably benign Het
Kif20a G A 18: 34,632,415 A822T probably benign Het
Myo1c A G 11: 75,657,519 T38A probably benign Het
Myt1l T C 12: 29,920,040 probably null Het
Nbas T C 12: 13,288,801 V214A probably damaging Het
Neb C A 2: 52,156,377 R6537L probably benign Het
Nwd2 T A 5: 63,808,070 F1666I probably benign Het
Olfr67 T A 7: 103,787,516 I254F probably damaging Het
Olfr906 A G 9: 38,488,911 N294S probably damaging Het
Prmt8 C A 6: 127,729,418 V137L probably damaging Het
Ptpn21 A T 12: 98,708,889 probably null Het
Rab15 A G 12: 76,822,269 S17P probably damaging Het
Rbm5 T G 9: 107,752,140 I338L probably benign Het
Rragc G A 4: 123,923,974 S218N probably damaging Het
Sacs T C 14: 61,212,400 M3965T probably damaging Het
Sgo2b T A 8: 63,927,288 I837F probably benign Het
Sorcs3 T G 19: 48,749,396 C751G probably damaging Het
Sowahc A G 10: 59,223,098 D352G probably benign Het
Sox15 C T 11: 69,655,730 R120C probably damaging Het
Srr A G 11: 74,911,065 V126A possibly damaging Het
Tenm3 T A 8: 48,646,447 R108* probably null Het
Traf3ip2 A T 10: 39,641,341 M403L probably benign Het
Trappc11 T C 8: 47,501,558 D949G probably damaging Het
Ttn A G 2: 76,714,616 I32714T probably damaging Het
Ttn T A 2: 76,863,505 T218S possibly damaging Het
Uaca A T 9: 60,870,770 H811L probably damaging Het
Ugt2b1 T C 5: 86,925,954 E182G probably benign Het
Vmn1r49 T C 6: 90,072,804 D72G probably damaging Het
Vmn2r80 A T 10: 79,169,479 M317L probably benign Het
Vwa2 T C 19: 56,881,172 L13P possibly damaging Het
Zc3hav1 G A 6: 38,307,444 T912I probably benign Het
Zfp703 C T 8: 26,979,205 P299L probably damaging Het
Zfp948 A G 17: 21,587,514 K323E probably benign Het
Zfyve27 T G 19: 42,179,448 V143G unknown Het
Other mutations in Lpcat4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01905:Lpcat4 APN 2 112243043 unclassified probably null
IGL02319:Lpcat4 APN 2 112243884 missense probably damaging 1.00
IGL02950:Lpcat4 APN 2 112244042 missense possibly damaging 0.95
IGL03046:Lpcat4 UTSW 2 112241989 synonymous silent
R0131:Lpcat4 UTSW 2 112246748 missense probably damaging 0.99
R0131:Lpcat4 UTSW 2 112246748 missense probably damaging 0.99
R0132:Lpcat4 UTSW 2 112246748 missense probably damaging 0.99
R0271:Lpcat4 UTSW 2 112243245 splice site probably null
R0884:Lpcat4 UTSW 2 112242732 missense probably damaging 1.00
R1387:Lpcat4 UTSW 2 112244676 missense probably benign
R1731:Lpcat4 UTSW 2 112243843 missense probably damaging 1.00
R1988:Lpcat4 UTSW 2 112242542 missense possibly damaging 0.80
R2047:Lpcat4 UTSW 2 112244797 critical splice donor site probably null
R3924:Lpcat4 UTSW 2 112246716 missense possibly damaging 0.54
R4001:Lpcat4 UTSW 2 112239951 missense probably benign 0.21
R4326:Lpcat4 UTSW 2 112246392 missense probably benign 0.00
R5247:Lpcat4 UTSW 2 112242515 missense possibly damaging 0.64
R7239:Lpcat4 UTSW 2 112242707 missense possibly damaging 0.77
R7434:Lpcat4 UTSW 2 112243055 missense probably damaging 0.98
R7880:Lpcat4 UTSW 2 112240031 missense probably benign 0.05
R7963:Lpcat4 UTSW 2 112240031 missense probably benign 0.05
R8002:Lpcat4 UTSW 2 112244354 missense probably benign 0.21
Predicted Primers PCR Primer
(F):5'- ACAGCATCCGGAAAGTGAC -3'
(R):5'- AAGCTGGAGTCCTCACCAAG -3'

Sequencing Primer
(F):5'- AAAGTGACCAGGGCGCTC -3'
(R):5'- GAGTCCTCACCAAGGCTCCTC -3'
Posted On2017-03-31