Incidental Mutation 'R3907:Hmgcll1'
ID 474631
Institutional Source Beutler Lab
Gene Symbol Hmgcll1
Ensembl Gene ENSMUSG00000007908
Gene Name 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
Synonyms
MMRRC Submission 040908-MU
Accession Numbers

Ncbi RefSeq: NM_173731; MGI: 2446108
Essential gene? Probably non essential (E-score: 0.093) question?
Stock # R3907 (G1)
Quality Score 225
Status Not validated
Chromosome 9
Chromosomal Location 76014855-76136350 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) G to A at 76072661 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Histidine at position 111 (R111H)
Ref Sequence ENSEMBL: ENSMUSP00000008052 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000008052] [ENSMUST00000117981] [ENSMUST00000183425] [ENSMUST00000183979]
AlphaFold Q8JZS7
Predicted Effect probably benign
Transcript: ENSMUST00000008052
AA Change: R111H

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000008052
Gene: ENSMUSG00000007908
AA Change: R111H

DomainStartEndE-ValueType
Pfam:HMGL-like 47 321 2.2e-67 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000117981
SMART Domains Protein: ENSMUSP00000114045
Gene: ENSMUSG00000007908

DomainStartEndE-ValueType
Pfam:HMGL-like 56 104 1e-10 PFAM
Pfam:HMGL-like 99 183 2e-8 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000121592
SMART Domains Protein: ENSMUSP00000113290
Gene: ENSMUSG00000007908

DomainStartEndE-ValueType
Pfam:HMGL-like 56 215 8.8e-28 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000183425
SMART Domains Protein: ENSMUSP00000139094
Gene: ENSMUSG00000007908

DomainStartEndE-ValueType
Pfam:HMGL-like 56 101 8.5e-11 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000183505
Predicted Effect probably benign
Transcript: ENSMUST00000183979
SMART Domains Protein: ENSMUSP00000138914
Gene: ENSMUSG00000007908

DomainStartEndE-ValueType
Pfam:HMGL-like 56 104 6.4e-11 PFAM
Pfam:HMGL-like 98 201 1.6e-32 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000194758
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.5%
Validation Efficiency 97% (56/58)
Allele List at MGI

All alleles(6) : Targeted(2) Gene trapped(4)
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930402H24Rik C T 2: 130,736,576 A663T probably damaging Het
Adamts3 C A 5: 89,861,355 G150C probably damaging Het
Ampd3 A G 7: 110,793,670 D215G possibly damaging Het
Ank2 A G 3: 127,016,898 L513P probably damaging Het
Apba1 T C 19: 23,937,506 I690T probably damaging Het
Arid1a T C 4: 133,692,912 probably benign Het
Arsi G A 18: 60,916,651 G202E probably benign Het
Asns C T 6: 7,682,270 probably null Het
Aspg T A 12: 112,112,259 Y57* probably null Het
Asph T C 4: 9,474,934 K680R probably benign Het
Atp2b4 A T 1: 133,738,586 S243T probably damaging Het
Cacna1s T A 1: 136,084,269 M483K probably damaging Het
Car4 G A 11: 84,964,357 V141M probably damaging Het
Cct4 A G 11: 23,001,560 I376V probably benign Het
Chrm4 C T 2: 91,927,739 A164V probably damaging Het
Csf3r A T 4: 126,034,447 D291V probably benign Het
Dcaf6 A T 1: 165,424,380 C58* probably null Het
Ddi2 T C 4: 141,684,281 D440G probably benign Het
Defb4 A T 8: 19,201,261 Q48L possibly damaging Het
Duox2 C T 2: 122,283,060 probably null Het
E130308A19Rik C T 4: 59,752,393 T502I probably benign Het
Ephb1 A G 9: 102,001,726 C522R probably benign Het
Fam76a T C 4: 132,916,121 K101E probably damaging Het
Fat1 G C 8: 45,023,035 R1706T probably benign Het
Fn1 C T 1: 71,607,913 G1482R probably damaging Het
Gm10110 T C 14: 89,898,147 noncoding transcript Het
Gphn T A 12: 78,493,942 probably benign Het
Hars A T 18: 36,782,716 D48E probably benign Het
Ighv3-4 A G 12: 114,253,918 S18P probably damaging Het
Iws1 G A 18: 32,079,920 E134K possibly damaging Het
Kcnj4 G T 15: 79,485,745 H11Q probably benign Het
Krt16 A G 11: 100,247,163 V329A possibly damaging Het
Loxhd1 A T 18: 77,408,768 M1575L possibly damaging Het
Mapkapk2 A T 1: 131,056,914 S234T probably damaging Het
Mum1 T C 10: 80,238,316 V401A probably damaging Het
Mxd1 G T 6: 86,650,960 Q199K probably benign Het
Nlrp5 T A 7: 23,433,646 D905E possibly damaging Het
Olfr1222 A C 2: 89,125,583 Y49* probably null Het
Olfr5 A T 7: 6,480,679 V159D probably damaging Het
Otoa A T 7: 121,125,565 Q489L probably damaging Het
Pced1b T C 15: 97,384,550 S157P probably damaging Het
Ppp1r16b T C 2: 158,761,490 I345T probably benign Het
Prrt4 G T 6: 29,177,174 L199M probably damaging Het
Ptpn6 T C 6: 124,725,276 D347G possibly damaging Het
Rcan1 A G 16: 92,466,029 probably benign Het
Rif1 C T 2: 52,112,545 L2004F probably benign Het
Rnf185 A G 11: 3,426,681 probably benign Het
Shank2 C T 7: 144,409,576 P307L probably damaging Het
Slc19a3 G A 1: 83,014,813 R396C possibly damaging Het
Stn1 T C 19: 47,507,823 D321G probably damaging Het
Taar7a T C 10: 23,992,559 Y308C probably benign Het
Tespa1 T C 10: 130,356,797 probably benign Het
Tmcc2 T C 1: 132,360,638 D359G probably damaging Het
Trhde C T 10: 114,800,696 G202E possibly damaging Het
Trip12 T C 1: 84,732,106 T469A possibly damaging Het
Trip4 A G 9: 65,833,426 I533T probably benign Het
Tsc22d1 T C 14: 76,416,543 I154T probably damaging Het
Ttn C A 2: 76,903,342 probably benign Het
Ugt8a T C 3: 125,914,982 T160A possibly damaging Het
Usp54 A T 14: 20,586,113 S288T probably damaging Het
Utrn C T 10: 12,710,182 probably benign Het
Other mutations in Hmgcll1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02151:Hmgcll1 APN 9 76081438 missense probably benign 0.01
mephistopheles UTSW 9 76081449 missense probably benign 0.00
P0005:Hmgcll1 UTSW 9 76074759 missense possibly damaging 0.90
R1178:Hmgcll1 UTSW 9 76130331 missense probably damaging 1.00
R4161:Hmgcll1 UTSW 9 76074916 intron probably benign
R4843:Hmgcll1 UTSW 9 76072634 missense possibly damaging 0.79
R4896:Hmgcll1 UTSW 9 76056178 missense possibly damaging 0.73
R5614:Hmgcll1 UTSW 9 76081393 missense probably damaging 1.00
R5702:Hmgcll1 UTSW 9 76084390 missense possibly damaging 0.67
R6272:Hmgcll1 UTSW 9 76130345 missense probably damaging 1.00
R6681:Hmgcll1 UTSW 9 76081449 missense probably benign 0.00
R7075:Hmgcll1 UTSW 9 76056552 missense possibly damaging 0.89
R8097:Hmgcll1 UTSW 9 76015139 missense probably benign 0.00
R8987:Hmgcll1 UTSW 9 76130310 critical splice acceptor site probably null
R9215:Hmgcll1 UTSW 9 76074801 missense probably benign
R9228:Hmgcll1 UTSW 9 76084450 missense probably damaging 1.00
R9662:Hmgcll1 UTSW 9 76015115 missense probably benign 0.31
X0054:Hmgcll1 UTSW 9 76130404 missense probably damaging 1.00
Predicted Primers
Posted On 2017-04-14