Mutagenetix > Incidental Mutation

Incidental Mutation 'R0506:Chst14'

47555

Institutional Source

Beutler Lab

Gene Symbol

Chst14

Ensembl Gene

ENSMUSG00000074916

Gene Name

carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14

Synonyms

2600016L03Rik, D4ST-1, D4st1

MMRRC Submission

038701-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.859) question?

Stock #

R0506 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

118926496-118928585 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 118927721 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 357 (L357P)

Ref Sequence

ENSEMBL: ENSMUSP00000099579 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036578] [ENSMUST00000099546] [ENSMUST00000110837]

AlphaFold

Q80V53

Predicted Effect

probably benign
Transcript: ENSMUST00000036578

SMART Domains

Protein: ENSMUSP00000043130
Gene: ENSMUSG00000040007

Domain	Start	End	E-Value	Type
low complexity region	86	108	N/A	INTRINSIC
low complexity region	117	141	N/A	INTRINSIC
low complexity region	299	310	N/A	INTRINSIC
low complexity region	564	579	N/A	INTRINSIC
BAH	616	771	1.17e-9	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000099546
AA Change: L357P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000099579
Gene: ENSMUSG00000074916
AA Change: L357P

Domain	Start	End	E-Value	Type
low complexity region	18	42	N/A	INTRINSIC
Pfam:Sulfotransfer_2	139	365	1.6e-56	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110837
AA Change: L332P

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000106461
Gene: ENSMUSG00000074916
AA Change: L332P

Domain	Start	End	E-Value	Type
low complexity region	18	42	N/A	INTRINSIC
Pfam:Sulfotransfer_2	135	340	1.5e-41	PFAM

Meta Mutation Damage Score

0.6175

Coding Region Coverage

1x: 99.6%
3x: 98.8%
10x: 96.7%
20x: 93.3%

Validation Efficiency

100% (100/100)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the HNK-1 family of sulfotransferases. The encoded protein transfers sulfate to the C-4 hydroxyl of N-acetylgalactosamine residues in dermatan sulfate. Mutations in this gene have been associated with adducted thumb-clubfoot syndrome.[provided by RefSeq, Mar 2010]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit accelerated peripheral nerve regeneration, decreased body weight, premature death, fragile skin and background sensitive abnormal fertility, kinked tail and tooth growth. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm5	T	A	7: 119,538,096 (GRCm38)	C378*	probably null	Het
Ago3	T	C	4: 126,417,252 (GRCm38)	D56G	possibly damaging	Het
Ahnak	G	T	19: 9,009,128 (GRCm38)	G2592V	probably damaging	Het
Aldh6a1	C	T	12: 84,433,526 (GRCm38)	G470D	probably damaging	Het
Ankub1	T	A	3: 57,690,375 (GRCm38)	N58I	probably damaging	Het
Apol7b	G	T	15: 77,425,528 (GRCm38)	T23K	probably benign	Het
Arap2	G	A	5: 62,606,131 (GRCm38)	P1557S	possibly damaging	Het
Arhgap24	T	C	5: 102,875,777 (GRCm38)	Y136H	probably damaging	Het
Atp1a1	A	G	3: 101,589,812 (GRCm38)	F393L	probably damaging	Het
Bcdin3d	A	T	15: 99,470,992 (GRCm38)	C109S	probably damaging	Het
Catsperd	A	G	17: 56,658,078 (GRCm38)	K475R	possibly damaging	Het
Cblb	A	G	16: 52,204,480 (GRCm38)	T913A	probably benign	Het
Cbx6	A	G	15: 79,828,203 (GRCm38)	L341P	probably benign	Het
Cd177	T	C	7: 24,758,356 (GRCm38)	Y159C	probably damaging	Het
Cdh7	A	G	1: 110,100,114 (GRCm38)	N530D	probably damaging	Het
Cdk8	T	C	5: 146,298,872 (GRCm38)	F270L	probably damaging	Het
Ces2c	A	T	8: 104,848,024 (GRCm38)	T38S	probably damaging	Het
Clca3b	T	A	3: 144,822,866 (GRCm38)		probably benign	Het
Cluh	A	G	11: 74,664,894 (GRCm38)	S839G	probably benign	Het
Cnga4	T	A	7: 105,407,740 (GRCm38)	V350E	probably damaging	Het
Creb1	G	A	1: 64,570,267 (GRCm38)	G180R	probably damaging	Het
Csmd3	T	C	15: 48,457,511 (GRCm38)	E301G	probably benign	Het
Cyp4f18	A	T	8: 71,996,000 (GRCm38)	D268E	probably benign	Het
Dock5	A	G	14: 67,784,792 (GRCm38)		probably benign	Het
Dpy19l4	T	A	4: 11,289,715 (GRCm38)	H332L	probably benign	Het
Dync2h1	T	A	9: 7,113,153 (GRCm38)	H224L	probably benign	Het
Dzip1l	C	A	9: 99,663,081 (GRCm38)	Q585K	possibly damaging	Het
Erf	C	T	7: 25,244,376 (GRCm38)	G510D	probably damaging	Het
Fanci	T	C	7: 79,432,178 (GRCm38)	L623P	probably benign	Het
Fat1	T	C	8: 45,022,951 (GRCm38)	V1655A	probably damaging	Het
Fat4	T	C	3: 38,888,314 (GRCm38)	V452A	probably benign	Het
Gal3st4	C	T	5: 138,265,889 (GRCm38)	G283S	probably benign	Het
Gm5422	A	G	10: 31,250,322 (GRCm38)		noncoding transcript	Het
Gnal	C	T	18: 67,088,673 (GRCm38)	T49I	unknown	Het
Gng5	A	G	3: 146,503,348 (GRCm38)	N57S	probably damaging	Het
Herc1	A	G	9: 66,448,159 (GRCm38)	I2231V	probably damaging	Het
Hgfac	G	T	5: 35,044,240 (GRCm38)	G272W	probably damaging	Het
Hmcn1	T	A	1: 150,742,341 (GRCm38)	D1265V	possibly damaging	Het
Ifi207	T	A	1: 173,736,312 (GRCm38)	Q47L	possibly damaging	Het
Klhl40	G	A	9: 121,778,067 (GRCm38)	E98K	probably damaging	Het
Lepr	G	T	4: 101,773,010 (GRCm38)		probably benign	Het
Lyst	A	G	13: 13,638,015 (GRCm38)	H1004R	probably benign	Het
Map3k1	T	A	13: 111,755,764 (GRCm38)	R986*	probably null	Het
Mmp1b	C	A	9: 7,387,013 (GRCm38)	Q66H	possibly damaging	Het
Mpo	T	C	11: 87,803,504 (GRCm38)	S107P	probably benign	Het
Mroh9	T	C	1: 163,060,636 (GRCm38)	H290R	possibly damaging	Het
Myo7b	A	G	18: 31,964,386 (GRCm38)		probably null	Het
Myom1	T	C	17: 71,092,220 (GRCm38)		probably benign	Het
Nalcn	C	T	14: 123,596,614 (GRCm38)	V50I	possibly damaging	Het
Negr1	A	G	3: 157,160,748 (GRCm38)		probably benign	Het
Nlrc5	T	G	8: 94,493,125 (GRCm38)		probably benign	Het
Nyap2	G	A	1: 81,087,312 (GRCm38)	D14N	probably damaging	Het
Olfr1458	G	A	19: 13,103,278 (GRCm38)	R3C	possibly damaging	Het
Olfr1490	T	A	19: 13,654,897 (GRCm38)	I151N	possibly damaging	Het
Olfr91	C	A	17: 37,093,311 (GRCm38)	G188W	probably damaging	Het
Parp14	A	T	16: 35,841,409 (GRCm38)	S1419T	possibly damaging	Het
Piezo2	A	G	18: 63,027,544 (GRCm38)	F2347S	probably damaging	Het
Pigf	A	G	17: 87,008,909 (GRCm38)	V147A	probably benign	Het
Pkhd1	A	T	1: 20,559,469 (GRCm38)	M637K	probably benign	Het
Plce1	T	C	19: 38,760,138 (GRCm38)	I1771T	probably benign	Het
Ppp6c	A	T	2: 39,206,648 (GRCm38)		probably benign	Het
Prag1	T	C	8: 36,103,700 (GRCm38)	V479A	possibly damaging	Het
Prss33	A	T	17: 23,835,105 (GRCm38)	D42E	probably benign	Het
Psmb10	A	G	8: 105,937,545 (GRCm38)	V64A	possibly damaging	Het
Psmd14	A	G	2: 61,800,063 (GRCm38)	T306A	probably benign	Het
Psmg1	C	T	16: 95,989,487 (GRCm38)		probably benign	Het
Rc3h2	A	T	2: 37,376,659 (GRCm38)		probably null	Het
Reln	C	T	5: 21,920,496 (GRCm38)	V2730I	probably damaging	Het
Sec24a	A	T	11: 51,743,795 (GRCm38)	H101Q	probably benign	Het
Selenoi	A	G	5: 30,266,956 (GRCm38)	N385S	probably benign	Het
Slc24a4	T	C	12: 102,131,623 (GRCm38)		probably null	Het
Slc4a10	G	A	2: 62,250,533 (GRCm38)	S338N	probably benign	Het
Slfn3	A	T	11: 83,213,160 (GRCm38)	T286S	probably damaging	Het
Snx29	A	G	16: 11,395,303 (GRCm38)	D111G	probably benign	Het
Sp8	T	C	12: 118,848,565 (GRCm38)	S52P	possibly damaging	Het
Srek1	G	T	13: 103,760,590 (GRCm38)	T81K	probably damaging	Het
Sry	C	G	Y: 2,662,864 (GRCm38)	Q265H	unknown	Het
Taf3	A	G	2: 9,940,993 (GRCm38)	V600A	probably benign	Het
Tatdn2	C	A	6: 113,702,589 (GRCm38)	D298E	probably benign	Het
Tmem253	A	T	14: 52,017,206 (GRCm38)		probably benign	Het
Tmem63a	T	A	1: 180,958,049 (GRCm38)		probably null	Het
Tmprss11b	T	C	5: 86,661,640 (GRCm38)	D331G	probably damaging	Het
Tor1aip1	T	A	1: 156,007,674 (GRCm38)	K143*	probably null	Het
Trappc8	A	T	18: 20,844,188 (GRCm38)	N841K	possibly damaging	Het
Trio	T	C	15: 27,854,963 (GRCm38)	Q711R	probably benign	Het
Trmt10b	C	A	4: 45,304,306 (GRCm38)	T114N	probably damaging	Het
Trpv2	C	A	11: 62,582,906 (GRCm38)	A129D	probably benign	Het
Ttll4	T	G	1: 74,688,618 (GRCm38)	D846E	probably benign	Het
Ugt2a3	A	G	5: 87,336,649 (GRCm38)	L172P	possibly damaging	Het
Usp19	T	A	9: 108,494,487 (GRCm38)	F355Y	probably damaging	Het
Vmn1r209	C	T	13: 22,805,944 (GRCm38)	G192D	probably damaging	Het
Vmn2r107	T	G	17: 20,357,759 (GRCm38)	D443E	probably benign	Het
Wee2	A	T	6: 40,463,253 (GRCm38)	E445V	probably benign	Het
Zer1	A	T	2: 30,101,807 (GRCm38)	I680N	probably damaging	Het
Zfhx4	T	C	3: 5,402,735 (GRCm38)	L2651P	probably damaging	Het
Zfp692	C	T	11: 58,309,055 (GRCm38)	Q157*	probably null	Het
Zfp964	T	A	8: 69,663,937 (GRCm38)	C396S	unknown	Het

Other mutations in Chst14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1468:Chst14	UTSW	2	118,927,664 (GRCm38)	missense	probably damaging	1.00
R1468:Chst14	UTSW	2	118,927,664 (GRCm38)	missense	probably damaging	1.00
R1640:Chst14	UTSW	2	118,926,898 (GRCm38)	missense	probably damaging	1.00
R1892:Chst14	UTSW	2	118,927,349 (GRCm38)	missense	probably damaging	1.00
R1899:Chst14	UTSW	2	118,927,015 (GRCm38)	missense	possibly damaging	0.62
R6056:Chst14	UTSW	2	118,927,733 (GRCm38)	missense	probably damaging	1.00
R6236:Chst14	UTSW	2	118,927,516 (GRCm38)	missense	probably damaging	1.00
R6246:Chst14	UTSW	2	118,927,001 (GRCm38)	missense	probably damaging	1.00
R7792:Chst14	UTSW	2	118,927,775 (GRCm38)	missense	probably benign
R8464:Chst14	UTSW	2	118,927,043 (GRCm38)	missense	probably benign
R8544:Chst14	UTSW	2	118,927,529 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACGATGTCACCTTCCCAGAGTTCC -3'
(R):5'- GCAGTTCACCAGTGAAAGCAGCAG -3'

Sequencing Primer
(F):5'- CCAGAGTTCCTGAGATACCTG -3'
(R):5'- CAGTCCTTACCACTGAGATATGGAG -3'

Posted On

2013-06-12