Mutagenetix > Incidental Mutation

Incidental Mutation 'R0506:Slc24a4'

47604

Institutional Source

Beutler Lab

Gene Symbol

Slc24a4

Ensembl Gene

ENSMUSG00000041771

Gene Name

solute carrier family 24 (sodium/potassium/calcium exchanger), member 4

Synonyms

NCKX4, A930002M03Rik

MMRRC Submission

038701-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0506 (G1)

Quality Score

209

Status

Validated

Chromosome

Chromosomal Location

102128733-102267091 bp(+) (GRCm38)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 102131623 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079020] [ENSMUST00000159329]

AlphaFold

Q8CGQ8

Predicted Effect

probably null
Transcript: ENSMUST00000079020

SMART Domains

Protein: ENSMUSP00000078030
Gene: ENSMUSG00000041771

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:Na_Ca_ex	86	229	2.4e-31	PFAM
low complexity region	367	388	N/A	INTRINSIC
Pfam:Na_Ca_ex	435	587	2.4e-30	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000159329

SMART Domains

Protein: ENSMUSP00000124513
Gene: ENSMUSG00000041771

Domain	Start	End	E-Value	Type
transmembrane domain	23	45	N/A	INTRINSIC
Pfam:Na_Ca_ex	113	245	1e-32	PFAM
low complexity region	365	386	N/A	INTRINSIC
Pfam:Na_Ca_ex	443	562	1.4e-21	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160954

Predicted Effect

probably null
Transcript: ENSMUST00000161325

SMART Domains

Protein: ENSMUSP00000125012
Gene: ENSMUSG00000041771

Domain	Start	End	E-Value	Type
transmembrane domain	23	45	N/A	INTRINSIC
Pfam:Na_Ca_ex	103	246	1.3e-31	PFAM
low complexity region	365	386	N/A	INTRINSIC
Pfam:Na_Ca_ex	433	585	1.3e-30	PFAM

Meta Mutation Damage Score

0.9499

Coding Region Coverage

1x: 99.6%
3x: 98.8%
10x: 96.7%
20x: 93.3%

Validation Efficiency

100% (100/100)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the potassium-dependent sodium/calcium exchanger protein family. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jul 2010]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired olfactory response and reduced weight. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm5	T	A	7: 119,538,096	C378*	probably null	Het
Ago3	T	C	4: 126,417,252	D56G	possibly damaging	Het
Ahnak	G	T	19: 9,009,128	G2592V	probably damaging	Het
Aldh6a1	C	T	12: 84,433,526	G470D	probably damaging	Het
Ankub1	T	A	3: 57,690,375	N58I	probably damaging	Het
Apol7b	G	T	15: 77,425,528	T23K	probably benign	Het
Arap2	G	A	5: 62,606,131	P1557S	possibly damaging	Het
Arhgap24	T	C	5: 102,875,777	Y136H	probably damaging	Het
Atp1a1	A	G	3: 101,589,812	F393L	probably damaging	Het
Bcdin3d	A	T	15: 99,470,992	C109S	probably damaging	Het
Catsperd	A	G	17: 56,658,078	K475R	possibly damaging	Het
Cblb	A	G	16: 52,204,480	T913A	probably benign	Het
Cbx6	A	G	15: 79,828,203	L341P	probably benign	Het
Cd177	T	C	7: 24,758,356	Y159C	probably damaging	Het
Cdh7	A	G	1: 110,100,114	N530D	probably damaging	Het
Cdk8	T	C	5: 146,298,872	F270L	probably damaging	Het
Ces2c	A	T	8: 104,848,024	T38S	probably damaging	Het
Chst14	T	C	2: 118,927,721	L357P	probably damaging	Het
Clca3b	T	A	3: 144,822,866		probably benign	Het
Cluh	A	G	11: 74,664,894	S839G	probably benign	Het
Cnga4	T	A	7: 105,407,740	V350E	probably damaging	Het
Creb1	G	A	1: 64,570,267	G180R	probably damaging	Het
Csmd3	T	C	15: 48,457,511	E301G	probably benign	Het
Cyp4f18	A	T	8: 71,996,000	D268E	probably benign	Het
Dock5	A	G	14: 67,784,792		probably benign	Het
Dpy19l4	T	A	4: 11,289,715	H332L	probably benign	Het
Dync2h1	T	A	9: 7,113,153	H224L	probably benign	Het
Dzip1l	C	A	9: 99,663,081	Q585K	possibly damaging	Het
Erf	C	T	7: 25,244,376	G510D	probably damaging	Het
Fanci	T	C	7: 79,432,178	L623P	probably benign	Het
Fat1	T	C	8: 45,022,951	V1655A	probably damaging	Het
Fat4	T	C	3: 38,888,314	V452A	probably benign	Het
Gal3st4	C	T	5: 138,265,889	G283S	probably benign	Het
Gm5422	A	G	10: 31,250,322		noncoding transcript	Het
Gnal	C	T	18: 67,088,673	T49I	unknown	Het
Gng5	A	G	3: 146,503,348	N57S	probably damaging	Het
Herc1	A	G	9: 66,448,159	I2231V	probably damaging	Het
Hgfac	G	T	5: 35,044,240	G272W	probably damaging	Het
Hmcn1	T	A	1: 150,742,341	D1265V	possibly damaging	Het
Ifi207	T	A	1: 173,736,312	Q47L	possibly damaging	Het
Klhl40	G	A	9: 121,778,067	E98K	probably damaging	Het
Lepr	G	T	4: 101,773,010		probably benign	Het
Lyst	A	G	13: 13,638,015	H1004R	probably benign	Het
Map3k1	T	A	13: 111,755,764	R986*	probably null	Het
Mmp1b	C	A	9: 7,387,013	Q66H	possibly damaging	Het
Mpo	T	C	11: 87,803,504	S107P	probably benign	Het
Mroh9	T	C	1: 163,060,636	H290R	possibly damaging	Het
Myo7b	A	G	18: 31,964,386		probably null	Het
Myom1	T	C	17: 71,092,220		probably benign	Het
Nalcn	C	T	14: 123,596,614	V50I	possibly damaging	Het
Negr1	A	G	3: 157,160,748		probably benign	Het
Nlrc5	T	G	8: 94,493,125		probably benign	Het
Nyap2	G	A	1: 81,087,312	D14N	probably damaging	Het
Olfr1458	G	A	19: 13,103,278	R3C	possibly damaging	Het
Olfr1490	T	A	19: 13,654,897	I151N	possibly damaging	Het
Olfr91	C	A	17: 37,093,311	G188W	probably damaging	Het
Parp14	A	T	16: 35,841,409	S1419T	possibly damaging	Het
Piezo2	A	G	18: 63,027,544	F2347S	probably damaging	Het
Pigf	A	G	17: 87,008,909	V147A	probably benign	Het
Pkhd1	A	T	1: 20,559,469	M637K	probably benign	Het
Plce1	T	C	19: 38,760,138	I1771T	probably benign	Het
Ppp6c	A	T	2: 39,206,648		probably benign	Het
Prag1	T	C	8: 36,103,700	V479A	possibly damaging	Het
Prss33	A	T	17: 23,835,105	D42E	probably benign	Het
Psmb10	A	G	8: 105,937,545	V64A	possibly damaging	Het
Psmd14	A	G	2: 61,800,063	T306A	probably benign	Het
Psmg1	C	T	16: 95,989,487		probably benign	Het
Rc3h2	A	T	2: 37,376,659		probably null	Het
Reln	C	T	5: 21,920,496	V2730I	probably damaging	Het
Sec24a	A	T	11: 51,743,795	H101Q	probably benign	Het
Selenoi	A	G	5: 30,266,956	N385S	probably benign	Het
Slc4a10	G	A	2: 62,250,533	S338N	probably benign	Het
Slfn3	A	T	11: 83,213,160	T286S	probably damaging	Het
Snx29	A	G	16: 11,395,303	D111G	probably benign	Het
Sp8	T	C	12: 118,848,565	S52P	possibly damaging	Het
Srek1	G	T	13: 103,760,590	T81K	probably damaging	Het
Sry	C	G	Y: 2,662,864	Q265H	unknown	Het
Taf3	A	G	2: 9,940,993	V600A	probably benign	Het
Tatdn2	C	A	6: 113,702,589	D298E	probably benign	Het
Tmem253	A	T	14: 52,017,206		probably benign	Het
Tmem63a	T	A	1: 180,958,049		probably null	Het
Tmprss11b	T	C	5: 86,661,640	D331G	probably damaging	Het
Tor1aip1	T	A	1: 156,007,674	K143*	probably null	Het
Trappc8	A	T	18: 20,844,188	N841K	possibly damaging	Het
Trio	T	C	15: 27,854,963	Q711R	probably benign	Het
Trmt10b	C	A	4: 45,304,306	T114N	probably damaging	Het
Trpv2	C	A	11: 62,582,906	A129D	probably benign	Het
Ttll4	T	G	1: 74,688,618	D846E	probably benign	Het
Ugt2a3	A	G	5: 87,336,649	L172P	possibly damaging	Het
Usp19	T	A	9: 108,494,487	F355Y	probably damaging	Het
Vmn1r209	C	T	13: 22,805,944	G192D	probably damaging	Het
Vmn2r107	T	G	17: 20,357,759	D443E	probably benign	Het
Wee2	A	T	6: 40,463,253	E445V	probably benign	Het
Zer1	A	T	2: 30,101,807	I680N	probably damaging	Het
Zfhx4	T	C	3: 5,402,735	L2651P	probably damaging	Het
Zfp692	C	T	11: 58,309,055	Q157*	probably null	Het
Zfp964	T	A	8: 69,663,937	C396S	unknown	Het

Other mutations in Slc24a4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01358:Slc24a4	APN	12	102223635	missense	probably benign	0.09
IGL01724:Slc24a4	APN	12	102218960	missense	possibly damaging	0.78
IGL01767:Slc24a4	APN	12	102223687	splice site	probably benign
IGL01814:Slc24a4	APN	12	102254618	missense	probably benign	0.00
IGL02047:Slc24a4	APN	12	102254623	missense	probably damaging	1.00
IGL02449:Slc24a4	APN	12	102227082	missense	probably benign	0.00
IGL02632:Slc24a4	APN	12	102234682	missense	probably benign	0.15
IGL03251:Slc24a4	APN	12	102222825	missense	probably damaging	0.98
spindly	UTSW	12	102264944	critical splice donor site	probably null
R0207:Slc24a4	UTSW	12	102228951	critical splice donor site	probably null
R0284:Slc24a4	UTSW	12	102260481	missense	probably damaging	1.00
R1903:Slc24a4	UTSW	12	102131617	missense	probably benign	0.00
R2004:Slc24a4	UTSW	12	102213907	missense	probably damaging	1.00
R2126:Slc24a4	UTSW	12	102222759	missense	probably damaging	1.00
R2518:Slc24a4	UTSW	12	102222051	missense	probably benign	0.02
R3498:Slc24a4	UTSW	12	102234692	missense	probably benign
R3620:Slc24a4	UTSW	12	102218963	missense	probably damaging	1.00
R3621:Slc24a4	UTSW	12	102218963	missense	probably damaging	1.00
R4917:Slc24a4	UTSW	12	102264944	critical splice donor site	probably null
R5028:Slc24a4	UTSW	12	102264370	missense	probably damaging	1.00
R5886:Slc24a4	UTSW	12	102260415	missense	probably damaging	1.00
R5914:Slc24a4	UTSW	12	102234790	missense	probably damaging	1.00
R6257:Slc24a4	UTSW	12	102254510	missense	probably benign	0.00
R6305:Slc24a4	UTSW	12	102222101	missense	possibly damaging	0.84
R6313:Slc24a4	UTSW	12	102254510	missense	probably benign	0.00
R6734:Slc24a4	UTSW	12	102219000	missense	probably damaging	1.00
R7378:Slc24a4	UTSW	12	102239176	missense	probably benign	0.06
R7419:Slc24a4	UTSW	12	102227091	critical splice donor site	probably null
R7529:Slc24a4	UTSW	12	102264448	missense	probably benign	0.01
R7715:Slc24a4	UTSW	12	102218960	missense	possibly damaging	0.89
R7781:Slc24a4	UTSW	12	102234853	critical splice donor site	probably null
R8258:Slc24a4	UTSW	12	102254669	missense	probably damaging	1.00
R8259:Slc24a4	UTSW	12	102254669	missense	probably damaging	1.00
R8766:Slc24a4	UTSW	12	102230452	missense	probably benign	0.00
R8811:Slc24a4	UTSW	12	102213874	missense	probably damaging	1.00
R9229:Slc24a4	UTSW	12	102234724	missense	possibly damaging	0.79
R9339:Slc24a4	UTSW	12	102264379	missense	probably damaging	1.00
R9599:Slc24a4	UTSW	12	102131520	missense	probably benign	0.10
R9680:Slc24a4	UTSW	12	102227075	missense	possibly damaging	0.95
Z1176:Slc24a4	UTSW	12	102228898	missense	probably damaging	1.00
Z1176:Slc24a4	UTSW	12	102239238	missense	probably benign	0.01
Z1177:Slc24a4	UTSW	12	102260420	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AAATAAGTACCCAACGTCTGTGCCC -3'
(R):5'- CCATCAAATGCACATGGCGAGC -3'

Sequencing Primer
(F):5'- GACCCAGCTAGATGCACAGG -3'
(R):5'- GACTCTCGAATGTGACCTTCGTAG -3'

Posted On

2013-06-12