Mutagenetix > Incidental Mutation

Incidental Mutation 'R0506:Snx29'

47617

Institutional Source

Beutler Lab

Gene Symbol

Snx29

Ensembl Gene

ENSMUSG00000071669

Gene Name

sorting nexin 29

Synonyms

4933437K13Rik, LOC381035, LOC385605, Gm11170, Rundc2a

MMRRC Submission

038701-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0506 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

11322908-11755472 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 11395303 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 111 (D111G)

Ref Sequence

ENSEMBL: ENSMUSP00000111481 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000115814] [ENSMUST00000180792]

AlphaFold

Q9D3S3

Predicted Effect

probably benign
Transcript: ENSMUST00000115814
AA Change: D111G

PolyPhen 2 Score 0.150 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000111481
Gene: ENSMUSG00000071669
AA Change: D111G

Domain	Start	End	E-Value	Type
low complexity region	64	74	N/A	INTRINSIC
RUN	115	178	7.89e-26	SMART
internal_repeat_1	192	211	2.98e-5	PROSPERO
internal_repeat_1	203	222	2.98e-5	PROSPERO
low complexity region	252	262	N/A	INTRINSIC
low complexity region	270	275	N/A	INTRINSIC
low complexity region	314	323	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000180792
AA Change: D111G

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000138025
Gene: ENSMUSG00000071669
AA Change: D111G

Domain	Start	End	E-Value	Type
low complexity region	64	74	N/A	INTRINSIC
RUN	115	178	7.89e-26	SMART
internal_repeat_1	192	211	2.63e-5	PROSPERO
internal_repeat_1	203	222	2.63e-5	PROSPERO
low complexity region	252	262	N/A	INTRINSIC
low complexity region	270	275	N/A	INTRINSIC
low complexity region	314	323	N/A	INTRINSIC
low complexity region	445	462	N/A	INTRINSIC
coiled coil region	467	548	N/A	INTRINSIC
PX	661	764	3.13e-9	SMART

Meta Mutation Damage Score

0.1495

Coding Region Coverage

1x: 99.6%
3x: 98.8%
10x: 96.7%
20x: 93.3%

Validation Efficiency

100% (100/100)

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm5	T	A	7: 119,538,096	C378*	probably null	Het
Ago3	T	C	4: 126,417,252	D56G	possibly damaging	Het
Ahnak	G	T	19: 9,009,128	G2592V	probably damaging	Het
Aldh6a1	C	T	12: 84,433,526	G470D	probably damaging	Het
Ankub1	T	A	3: 57,690,375	N58I	probably damaging	Het
Apol7b	G	T	15: 77,425,528	T23K	probably benign	Het
Arap2	G	A	5: 62,606,131	P1557S	possibly damaging	Het
Arhgap24	T	C	5: 102,875,777	Y136H	probably damaging	Het
Atp1a1	A	G	3: 101,589,812	F393L	probably damaging	Het
Bcdin3d	A	T	15: 99,470,992	C109S	probably damaging	Het
Catsperd	A	G	17: 56,658,078	K475R	possibly damaging	Het
Cblb	A	G	16: 52,204,480	T913A	probably benign	Het
Cbx6	A	G	15: 79,828,203	L341P	probably benign	Het
Cd177	T	C	7: 24,758,356	Y159C	probably damaging	Het
Cdh7	A	G	1: 110,100,114	N530D	probably damaging	Het
Cdk8	T	C	5: 146,298,872	F270L	probably damaging	Het
Ces2c	A	T	8: 104,848,024	T38S	probably damaging	Het
Chst14	T	C	2: 118,927,721	L357P	probably damaging	Het
Clca3b	T	A	3: 144,822,866		probably benign	Het
Cluh	A	G	11: 74,664,894	S839G	probably benign	Het
Cnga4	T	A	7: 105,407,740	V350E	probably damaging	Het
Creb1	G	A	1: 64,570,267	G180R	probably damaging	Het
Csmd3	T	C	15: 48,457,511	E301G	probably benign	Het
Cyp4f18	A	T	8: 71,996,000	D268E	probably benign	Het
Dock5	A	G	14: 67,784,792		probably benign	Het
Dpy19l4	T	A	4: 11,289,715	H332L	probably benign	Het
Dync2h1	T	A	9: 7,113,153	H224L	probably benign	Het
Dzip1l	C	A	9: 99,663,081	Q585K	possibly damaging	Het
Erf	C	T	7: 25,244,376	G510D	probably damaging	Het
Fanci	T	C	7: 79,432,178	L623P	probably benign	Het
Fat1	T	C	8: 45,022,951	V1655A	probably damaging	Het
Fat4	T	C	3: 38,888,314	V452A	probably benign	Het
Gal3st4	C	T	5: 138,265,889	G283S	probably benign	Het
Gm5422	A	G	10: 31,250,322		noncoding transcript	Het
Gnal	C	T	18: 67,088,673	T49I	unknown	Het
Gng5	A	G	3: 146,503,348	N57S	probably damaging	Het
Herc1	A	G	9: 66,448,159	I2231V	probably damaging	Het
Hgfac	G	T	5: 35,044,240	G272W	probably damaging	Het
Hmcn1	T	A	1: 150,742,341	D1265V	possibly damaging	Het
Ifi207	T	A	1: 173,736,312	Q47L	possibly damaging	Het
Klhl40	G	A	9: 121,778,067	E98K	probably damaging	Het
Lepr	G	T	4: 101,773,010		probably benign	Het
Lyst	A	G	13: 13,638,015	H1004R	probably benign	Het
Map3k1	T	A	13: 111,755,764	R986*	probably null	Het
Mmp1b	C	A	9: 7,387,013	Q66H	possibly damaging	Het
Mpo	T	C	11: 87,803,504	S107P	probably benign	Het
Mroh9	T	C	1: 163,060,636	H290R	possibly damaging	Het
Myo7b	A	G	18: 31,964,386		probably null	Het
Myom1	T	C	17: 71,092,220		probably benign	Het
Nalcn	C	T	14: 123,596,614	V50I	possibly damaging	Het
Negr1	A	G	3: 157,160,748		probably benign	Het
Nlrc5	T	G	8: 94,493,125		probably benign	Het
Nyap2	G	A	1: 81,087,312	D14N	probably damaging	Het
Olfr1458	G	A	19: 13,103,278	R3C	possibly damaging	Het
Olfr1490	T	A	19: 13,654,897	I151N	possibly damaging	Het
Olfr91	C	A	17: 37,093,311	G188W	probably damaging	Het
Parp14	A	T	16: 35,841,409	S1419T	possibly damaging	Het
Piezo2	A	G	18: 63,027,544	F2347S	probably damaging	Het
Pigf	A	G	17: 87,008,909	V147A	probably benign	Het
Pkhd1	A	T	1: 20,559,469	M637K	probably benign	Het
Plce1	T	C	19: 38,760,138	I1771T	probably benign	Het
Ppp6c	A	T	2: 39,206,648		probably benign	Het
Prag1	T	C	8: 36,103,700	V479A	possibly damaging	Het
Prss33	A	T	17: 23,835,105	D42E	probably benign	Het
Psmb10	A	G	8: 105,937,545	V64A	possibly damaging	Het
Psmd14	A	G	2: 61,800,063	T306A	probably benign	Het
Psmg1	C	T	16: 95,989,487		probably benign	Het
Rc3h2	A	T	2: 37,376,659		probably null	Het
Reln	C	T	5: 21,920,496	V2730I	probably damaging	Het
Sec24a	A	T	11: 51,743,795	H101Q	probably benign	Het
Selenoi	A	G	5: 30,266,956	N385S	probably benign	Het
Slc24a4	T	C	12: 102,131,623		probably null	Het
Slc4a10	G	A	2: 62,250,533	S338N	probably benign	Het
Slfn3	A	T	11: 83,213,160	T286S	probably damaging	Het
Sp8	T	C	12: 118,848,565	S52P	possibly damaging	Het
Srek1	G	T	13: 103,760,590	T81K	probably damaging	Het
Sry	C	G	Y: 2,662,864	Q265H	unknown	Het
Taf3	A	G	2: 9,940,993	V600A	probably benign	Het
Tatdn2	C	A	6: 113,702,589	D298E	probably benign	Het
Tmem253	A	T	14: 52,017,206		probably benign	Het
Tmem63a	T	A	1: 180,958,049		probably null	Het
Tmprss11b	T	C	5: 86,661,640	D331G	probably damaging	Het
Tor1aip1	T	A	1: 156,007,674	K143*	probably null	Het
Trappc8	A	T	18: 20,844,188	N841K	possibly damaging	Het
Trio	T	C	15: 27,854,963	Q711R	probably benign	Het
Trmt10b	C	A	4: 45,304,306	T114N	probably damaging	Het
Trpv2	C	A	11: 62,582,906	A129D	probably benign	Het
Ttll4	T	G	1: 74,688,618	D846E	probably benign	Het
Ugt2a3	A	G	5: 87,336,649	L172P	possibly damaging	Het
Usp19	T	A	9: 108,494,487	F355Y	probably damaging	Het
Vmn1r209	C	T	13: 22,805,944	G192D	probably damaging	Het
Vmn2r107	T	G	17: 20,357,759	D443E	probably benign	Het
Wee2	A	T	6: 40,463,253	E445V	probably benign	Het
Zer1	A	T	2: 30,101,807	I680N	probably damaging	Het
Zfhx4	T	C	3: 5,402,735	L2651P	probably damaging	Het
Zfp692	C	T	11: 58,309,055	Q157*	probably null	Het
Zfp964	T	A	8: 69,663,937	C396S	unknown	Het

Other mutations in Snx29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00733:Snx29	APN	16	11403502	missense	probably damaging	0.97
IGL02207:Snx29	APN	16	11738352	missense	probably damaging	1.00
PIT1430001:Snx29	UTSW	16	11403624	missense	probably benign	0.00
PIT4810001:Snx29	UTSW	16	11400981	missense	probably damaging	1.00
R0240:Snx29	UTSW	16	11660553	missense	probably damaging	1.00
R0240:Snx29	UTSW	16	11660553	missense	probably damaging	1.00
R0276:Snx29	UTSW	16	11738373	missense	probably benign	0.01
R0621:Snx29	UTSW	16	11405787	splice site	probably null
R0975:Snx29	UTSW	16	11347871	missense	possibly damaging	0.66
R1225:Snx29	UTSW	16	11420686	intron	probably benign
R1406:Snx29	UTSW	16	11399793	missense	probably benign	0.38
R1406:Snx29	UTSW	16	11399793	missense	probably benign	0.38
R1452:Snx29	UTSW	16	11631471	missense	probably damaging	1.00
R1515:Snx29	UTSW	16	11399837	critical splice donor site	probably null
R1874:Snx29	UTSW	16	11367681	missense	probably benign	0.01
R1953:Snx29	UTSW	16	11399783	nonsense	probably null
R1978:Snx29	UTSW	16	11367724	missense	probably benign	0.23
R2054:Snx29	UTSW	16	11631492	missense	probably damaging	1.00
R2105:Snx29	UTSW	16	11511034	missense	possibly damaging	0.72
R2128:Snx29	UTSW	16	11400971	missense	probably damaging	0.98
R2152:Snx29	UTSW	16	11400843	missense	possibly damaging	0.95
R2912:Snx29	UTSW	16	11447453	missense	probably damaging	0.99
R2913:Snx29	UTSW	16	11447453	missense	probably damaging	0.99
R2914:Snx29	UTSW	16	11447453	missense	probably damaging	0.99
R4468:Snx29	UTSW	16	11420701	splice site	probably null
R4469:Snx29	UTSW	16	11420701	splice site	probably null
R4612:Snx29	UTSW	16	11447495	missense	probably damaging	0.99
R4744:Snx29	UTSW	16	11349909	nonsense	probably null
R4798:Snx29	UTSW	16	11420736	missense	probably damaging	1.00
R5000:Snx29	UTSW	16	11403507	missense	probably damaging	0.99
R5165:Snx29	UTSW	16	11420775	missense	probably damaging	0.98
R5207:Snx29	UTSW	16	11738363	missense	probably damaging	1.00
R5235:Snx29	UTSW	16	11413246	missense	possibly damaging	0.94
R5274:Snx29	UTSW	16	11738404	missense	probably damaging	1.00
R5277:Snx29	UTSW	16	11399824	missense	possibly damaging	0.82
R5462:Snx29	UTSW	16	11511012	missense	possibly damaging	0.89
R5655:Snx29	UTSW	16	11755321	missense	probably damaging	1.00
R6036:Snx29	UTSW	16	11738437	splice site	probably null
R6036:Snx29	UTSW	16	11738437	splice site	probably null
R6326:Snx29	UTSW	16	11403566	missense	probably benign
R6576:Snx29	UTSW	16	11715056	critical splice donor site	probably null
R7406:Snx29	UTSW	16	11755316	missense	probably damaging	1.00
R7552:Snx29	UTSW	16	11420785	critical splice donor site	probably null
R7555:Snx29	UTSW	16	11400942	missense	probably benign	0.02
R7736:Snx29	UTSW	16	11367724	missense	probably benign	0.23
R7962:Snx29	UTSW	16	11413357	critical splice donor site	probably null
R8101:Snx29	UTSW	16	11571716	missense	probably benign	0.16
R8415:Snx29	UTSW	16	11447427	missense	probably damaging	1.00
R8549:Snx29	UTSW	16	11715056	critical splice donor site	probably null
R9010:Snx29	UTSW	16	11631527	missense	probably benign	0.00
R9091:Snx29	UTSW	16	11395291	missense	probably benign	0.33
R9099:Snx29	UTSW	16	11660571	missense	probably damaging	1.00
R9176:Snx29	UTSW	16	11418864	missense	probably benign
R9258:Snx29	UTSW	16	11714935	missense	possibly damaging	0.78
R9270:Snx29	UTSW	16	11395291	missense	probably benign	0.33
R9672:Snx29	UTSW	16	11660651	missense	probably benign	0.00
R9778:Snx29	UTSW	16	11405745	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- TGTCTGTGCTAAGGAAGTAATGCCG -3'
(R):5'- TGCACCAAGCCTTGAGCAGAAC -3'

Sequencing Primer
(F):5'- GGAAGTAATGCCGTTTATACCC -3'
(R):5'- GAGGCATTTGTCCTCCTACAG -3'

Posted On

2013-06-12