Mutagenetix > Incidental Mutation

Incidental Mutation 'LCD18:Il1rap'

478227

Institutional Source

Beutler Lab

Gene Symbol

Il1rap

Ensembl Gene

ENSMUSG00000022514

Gene Name

interleukin 1 receptor accessory protein

Synonyms

IL-1RAcP, 6430709H04Rik, IL-1R AcP

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

LCD18 (G1)

Quality Score

999

Status

Validated

Chromosome

Chromosomal Location

26400454-26548867 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

C to A at 26450343 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000134202 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023156] [ENSMUST00000096129] [ENSMUST00000166294] [ENSMUST00000174171] [ENSMUST00000174202]

AlphaFold

Q61730

Predicted Effect

probably benign
Transcript: ENSMUST00000023156

SMART Domains

Protein: ENSMUSP00000023156
Gene: ENSMUSG00000022514

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	32	132	1.21e-2	SMART
IG	145	232	4.04e0	SMART
IG	251	350	1.46e-5	SMART
low complexity region	368	381	N/A	INTRINSIC
TIR	404	549	5.29e-36	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000096129

SMART Domains

Protein: ENSMUSP00000093843
Gene: ENSMUSG00000022514

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	32	132	1.21e-2	SMART
IG	145	232	4.04e0	SMART
IG	251	350	1.46e-5	SMART
low complexity region	368	381	N/A	INTRINSIC
TIR	404	547	1.38e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000166294

SMART Domains

Protein: ENSMUSP00000128100
Gene: ENSMUSG00000022514

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	32	132	1.21e-2	SMART
IG	145	232	4.04e0	SMART
IG	251	350	1.46e-5	SMART
low complexity region	368	381	N/A	INTRINSIC
TIR	404	547	1.38e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000174171

SMART Domains

Protein: ENSMUSP00000133904
Gene: ENSMUSG00000022514

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	32	132	1.21e-2	SMART
IG	145	232	4.04e0	SMART
Blast:IG	251	312	1e-28	BLAST
low complexity region	316	332	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000174202

SMART Domains

Protein: ENSMUSP00000134202
Gene: ENSMUSG00000022514

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IG	32	132	1.21e-2	SMART
IG	145	232	4.04e0	SMART
IG	251	350	1.46e-5	SMART

Coding Region Coverage

1x: 0.0%
3x: 0.0%
10x: 0.0%
20x: 0.0%

Validation Efficiency

88% (169/191)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Interleukin 1 induces synthesis of acute phase and proinflammatory proteins during infection, tissue damage, or stress, by forming a complex at the cell membrane with an interleukin 1 receptor and an accessory protein. This gene encodes the interleukin 1 receptor accessory protein. The protein is a necessary part of the interleukin 1 receptor complex which initiates signalling events that result in the activation of interleukin 1-responsive genes. Alternative splicing of this gene results in two transcript variants encoding two different isoforms, one membrane-bound and one soluble. The ratio of soluble to membrane-bound forms increases during acute-phase induction or stress. [provided by RefSeq, Nov 2009]
PHENOTYPE: Mice homozygous for a knock-out allele are viable, fertile and grossly normal but show no biological response to IL-1. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 113 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A330008L17Rik	A	G	8: 100,450,057 (GRCm39)		noncoding transcript	Het
Aff2	C	A	X: 68,791,141 (GRCm39)		probably benign	Het
Aldh1a1	C	A	19: 20,604,010 (GRCm39)		probably benign	Het
Anxa7	C	T	14: 20,519,479 (GRCm39)	G113E	probably damaging	Het
Apba2	A	T	7: 64,271,908 (GRCm39)		probably benign	Het
Apc2	G	C	10: 80,135,808 (GRCm39)		probably benign	Het
App	C	G	16: 84,822,300 (GRCm39)		probably benign	Het
Asic2	C	A	11: 80,876,570 (GRCm39)		probably benign	Het
Btk	T	C	X: 133,479,574 (GRCm39)		probably benign	Het
Car12	C	A	9: 66,668,958 (GRCm39)		probably benign	Het
Ccdc121	GAGAAG	GAG	5: 31,644,717 (GRCm39)		probably benign	Het
Ccdc191	G	A	16: 43,742,164 (GRCm39)		probably benign	Het
Ccdc34	N		2: 110,016,318 (GRCm38)		probably benign	Het
Cd164	G	T	10: 41,397,922 (GRCm39)	A59S	probably benign	Het
Cd22	C	T	7: 30,577,507 (GRCm39)	R2H	possibly damaging	Het
Cdv3	C	A	9: 103,242,553 (GRCm39)		probably benign	Het
Cdv3	A	T	9: 103,242,542 (GRCm39)		probably benign	Het
Celf2	N		2: 6,779,076 (GRCm38)		probably benign	Het
Cfap299	G	A	5: 98,855,367 (GRCm39)		probably benign	Het
Clec18a	C	A	8: 111,802,768 (GRCm39)		probably benign	Het
Cnpy3	GGATGGAT	GGATAGATAGATAGATAGATGGAT	17: 47,048,462 (GRCm39)		probably benign	Het
Cntn4	A	G	6: 106,530,901 (GRCm39)		probably benign	Het
Cntnap5c	G	C	17: 58,469,155 (GRCm39)		probably benign	Het
Col2a1	C	A	15: 97,886,862 (GRCm39)		probably null	Het
Cpne3	G	T	4: 19,563,382 (GRCm39)		probably benign	Het
Cracd	GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	5: 76,806,589 (GRCm39)		probably benign	Het
Dab1	T	G	4: 103,903,769 (GRCm39)		probably benign	Het
Dapp1	G	A	3: 137,645,161 (GRCm39)		probably benign	Het
Dcc	G	A	18: 72,430,518 (GRCm39)		probably benign	Het
Dcun1d1	GAAAAAAAAA	GAAAAAAAAAA	3: 35,992,154 (GRCm39)		probably benign	Het
Dennd1b	G	A	1: 139,042,502 (GRCm39)		probably benign	Het
Dhdds	TAA	TA	4: 133,697,674 (GRCm39)		probably benign	Het
Dnah12	G	T	14: 26,571,342 (GRCm39)	G2817V	probably damaging	Het
Dnm3	CATATATATATATATATATATATA	CATATATATATATATATATATA	1: 162,234,130 (GRCm39)		probably benign	Het
Dock10	N		1: 80,716,623 (GRCm38)		probably benign	Het
Dusp10	G	T	1: 183,769,253 (GRCm39)	C73F	probably damaging	Het
Fgf20	A	C	8: 40,745,359 (GRCm39)		probably benign	Het
Ftsj3	G	T	11: 106,140,885 (GRCm39)		probably benign	Het
Gls	T	G	1: 52,222,526 (GRCm39)		probably benign	Het
Gm12130	T	C	11: 38,397,750 (GRCm39)		noncoding transcript	Het
Gm14936	G	A	X: 111,908,447 (GRCm39)		noncoding transcript	Het
Gm16630	C	T	6: 48,118,203 (GRCm39)		noncoding transcript	Het
Gm22194	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	10: 11,816,707 (GRCm39)		noncoding transcript	Het
Gm26917	C	G	17: 40,154,862 (GRCm39)		noncoding transcript	Het
Gm35048	GACACACACACACACACACACACACACACACACACACAC	GACACACACACACACACACACACACACACACACACAC	1: 90,449,248 (GRCm39)		noncoding transcript	Het
Gm37311	G	A	16: 77,415,169 (GRCm39)		noncoding transcript	Het
Gm37928	AACACACACACACACACACACACACACACACACA	AACACACACACACACACACACACACACACACACACA	3: 118,328,206 (GRCm39)		noncoding transcript	Het
Gm4302	T	C	10: 100,177,306 (GRCm39)	W197R	probably benign	Het
H2-Q4	G	A	17: 35,599,381 (GRCm39)	D155N	probably damaging	Het
H2-T23	T	C	17: 36,342,108 (GRCm39)		probably benign	Het
Hgs	CTTTTTTT	CTTTTTT	11: 120,360,404 (GRCm39)		probably benign	Het
Ighv5-9	C	T	12: 113,625,497 (GRCm39)	S82N	probably benign	Het
Inhbc	N		10: 127,367,140 (GRCm38)		probably benign	Het
Inpp4b	C	T	8: 82,419,639 (GRCm39)		probably benign	Het
Kars1	N		8: 111,993,708 (GRCm38)		probably benign	Het
Kcng4	G	T	8: 120,360,258 (GRCm39)	Y39*	probably null	Het
Kcnh7	A	G	2: 62,880,143 (GRCm39)		probably benign	Het
Klhl1	G	C	14: 96,555,166 (GRCm39)		probably benign	Het
Lrch1	C	T	14: 75,142,461 (GRCm39)		probably benign	Het
Lrp1b	G	C	2: 42,127,574 (GRCm39)		probably benign	Het
Lsm8	G	A	6: 18,844,315 (GRCm39)		probably benign	Het
Lsm8	G	A	6: 18,854,320 (GRCm39)		probably benign	Het
Magi2	T	C	5: 20,159,509 (GRCm39)		probably benign	Het
Matcap2	N		9: 22,442,083 (GRCm38)		probably benign	Het
Mef2c	G	A	13: 83,753,942 (GRCm39)		probably benign	Het
Mei4	A	G	9: 82,069,012 (GRCm39)		probably benign	Het
Mid1	T	A	X: 168,788,560 (GRCm39)		probably benign	Het
Mndal	G	C	1: 173,707,784 (GRCm39)		probably benign	Het
Mpped2	C	A	2: 106,551,773 (GRCm39)		probably benign	Het
Mtarc2	TAGGCAGCCAATCAGAGCACTGCCTCTCAGCGCCAGGCAGCCAATCAGAGCACTGCCTCTCAGCGCCAGGCA	TAGGCAGCCAATCAGAGCACTGCCTCTCAGCGCCAGGCA	1: 184,554,985 (GRCm39)		probably benign	Het
Mtf1	A	G	4: 124,723,109 (GRCm39)		probably benign	Het
Mxd1	T	C	6: 86,644,388 (GRCm39)		probably benign	Het
Nbea	G	T	3: 55,608,948 (GRCm39)		probably benign	Het
Ncor1	N		11: 62,419,782 (GRCm38)		probably benign	Het
Nox4	A	G	7: 86,892,275 (GRCm39)		probably benign	Het
Ocln	C	T	13: 100,657,075 (GRCm39)		probably benign	Het
Ofcc1	G	A	13: 40,246,443 (GRCm39)		probably benign	Het
Or5af2	T	A	11: 58,708,266 (GRCm39)	V144D	possibly damaging	Het
Paics	N		5: 76,956,744 (GRCm38)		probably null	Het
Paqr8	G	T	1: 20,984,882 (GRCm39)		probably benign	Het
Pate9	T	C	9: 36,444,849 (GRCm39)		probably benign	Het
Pdss1	C	T	2: 22,790,980 (GRCm39)		probably benign	Het
Piezo1	G	A	8: 123,222,308 (GRCm39)	R503W	probably damaging	Het
Pkhd1	G	A	1: 20,681,638 (GRCm39)		probably benign	Het
Ppp1r3f	C	A	X: 7,426,575 (GRCm39)	G562V	probably damaging	Het
Prr16	C	T	18: 51,333,396 (GRCm39)		probably benign	Het
Prss38	T	G	11: 59,266,467 (GRCm39)		probably benign	Het
Prxl2c	G	A	13: 64,435,099 (GRCm39)		probably benign	Het
Ptprk	T	C	10: 28,450,983 (GRCm39)		probably benign	Het
Pum1	N		4: 130,730,549 (GRCm38)		probably benign	Het
Rabgef1	N		5: 130,187,586 (GRCm38)		probably null	Het
Rgs16	G	A	1: 153,619,976 (GRCm39)		probably benign	Het
Riok3	G	T	18: 12,263,039 (GRCm39)		probably benign	Het
Rn18s-rs5	T	C	17: 40,159,446 (GRCm39)		noncoding transcript	Het
Robo2	N		16: 74,055,954 (GRCm38)		probably benign	Het
Rps6ka3	A	G	X: 158,062,211 (GRCm39)		probably benign	Het
Rptn	T	A	3: 93,304,848 (GRCm39)	L727Q	probably benign	Het
Slc25a46	C	A	18: 31,730,366 (GRCm39)		probably benign	Het
Spata31f1e	T	C	4: 42,792,885 (GRCm39)	T416A	probably benign	Het
Spsb1	C	T	4: 150,036,943 (GRCm39)		probably benign	Het
Tbc1d19	A	C	5: 53,974,051 (GRCm39)		probably benign	Het
Trav7-4	C	T	14: 53,698,975 (GRCm39)	L41F	probably benign	Het
Trip12	N		1: 84,754,482 (GRCm38)		probably benign	Het
Ttc13	G	A	8: 125,402,605 (GRCm39)		probably benign	Het
Ttll6	C	T	11: 96,046,084 (GRCm39)		probably benign	Het
Unc5b	C	G	10: 60,621,950 (GRCm39)		probably benign	Het
Vmn2r87	C	T	10: 130,314,583 (GRCm39)	M334I	probably benign	Het
Vps13b	G	T	15: 35,847,103 (GRCm39)	A2629S	probably damaging	Het
Wars2	N		3: 99,214,774 (GRCm38)		probably null	Het
Zdhhc3	AACACACACACACACACACACACACACACACAC	AACACACACACACACACACACACACACACACACAC	9: 122,912,087 (GRCm39)		probably benign	Het
Zfp26	C	A	9: 20,349,842 (GRCm39)	A241S	probably benign	Het
Zfp442	C	T	2: 150,261,768 (GRCm39)		probably benign	Het
Zfp808	C	T	13: 62,314,465 (GRCm39)		probably benign	Het

Other mutations in Il1rap

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Il1rap	APN	16	26,541,151 (GRCm39)	missense	possibly damaging	0.77
IGL00976:Il1rap	APN	16	26,517,589 (GRCm39)	missense	probably benign	0.09
IGL01075:Il1rap	APN	16	26,498,987 (GRCm39)	missense	possibly damaging	0.94
IGL01665:Il1rap	APN	16	26,541,463 (GRCm39)	missense	probably damaging	1.00
IGL01962:Il1rap	APN	16	26,529,318 (GRCm39)	nonsense	probably null
IGL02101:Il1rap	APN	16	26,442,932 (GRCm39)	missense	possibly damaging	0.61
IGL02411:Il1rap	APN	16	26,529,366 (GRCm39)	missense	probably damaging	1.00
IGL03132:Il1rap	APN	16	26,498,869 (GRCm39)	missense	probably damaging	1.00
bacchus	UTSW	16	26,529,382 (GRCm39)	critical splice donor site	probably null
I1329:Il1rap	UTSW	16	26,511,600 (GRCm39)	missense	probably benign	0.07
PIT1430001:Il1rap	UTSW	16	26,529,343 (GRCm39)	missense	possibly damaging	0.53
R0302:Il1rap	UTSW	16	26,511,544 (GRCm39)	missense	probably benign	0.02
R0454:Il1rap	UTSW	16	26,517,625 (GRCm39)	missense	probably damaging	1.00
R0481:Il1rap	UTSW	16	26,511,585 (GRCm39)	missense	probably damaging	1.00
R0612:Il1rap	UTSW	16	26,519,855 (GRCm39)	missense	possibly damaging	0.48
R0765:Il1rap	UTSW	16	26,529,382 (GRCm39)	critical splice donor site	probably null
R1552:Il1rap	UTSW	16	26,541,184 (GRCm39)	missense	possibly damaging	0.79
R1801:Il1rap	UTSW	16	26,517,625 (GRCm39)	missense	probably damaging	1.00
R1867:Il1rap	UTSW	16	26,541,676 (GRCm39)	missense	probably damaging	1.00
R1942:Il1rap	UTSW	16	26,541,205 (GRCm39)	missense	probably damaging	1.00
R1996:Il1rap	UTSW	16	26,541,243 (GRCm39)	missense	probably benign	0.06
R2118:Il1rap	UTSW	16	26,529,315 (GRCm39)	missense	probably damaging	1.00
R2122:Il1rap	UTSW	16	26,529,315 (GRCm39)	missense	probably damaging	1.00
R2124:Il1rap	UTSW	16	26,529,315 (GRCm39)	missense	probably damaging	1.00
R3104:Il1rap	UTSW	16	26,541,502 (GRCm39)	missense	probably benign	0.01
R3105:Il1rap	UTSW	16	26,541,502 (GRCm39)	missense	probably benign	0.01
R3106:Il1rap	UTSW	16	26,541,502 (GRCm39)	missense	probably benign	0.01
R3891:Il1rap	UTSW	16	26,495,606 (GRCm39)	missense	probably damaging	1.00
R4133:Il1rap	UTSW	16	26,541,636 (GRCm39)	missense	probably benign	0.34
R4409:Il1rap	UTSW	16	26,531,015 (GRCm39)	splice site	probably null
R4610:Il1rap	UTSW	16	26,533,526 (GRCm39)	missense	probably benign	0.11
R4755:Il1rap	UTSW	16	26,541,532 (GRCm39)	missense	probably benign	0.20
R4776:Il1rap	UTSW	16	26,511,549 (GRCm39)	missense	possibly damaging	0.57
R4793:Il1rap	UTSW	16	26,513,984 (GRCm39)	missense	probably benign	0.09
R4811:Il1rap	UTSW	16	26,519,988 (GRCm39)	critical splice donor site	probably null
R4834:Il1rap	UTSW	16	26,495,685 (GRCm39)	missense	probably damaging	1.00
R5119:Il1rap	UTSW	16	26,442,949 (GRCm39)	missense	probably benign	0.01
R5744:Il1rap	UTSW	16	26,498,974 (GRCm39)	missense	probably benign	0.01
R6108:Il1rap	UTSW	16	26,541,457 (GRCm39)	missense	probably damaging	1.00
R6149:Il1rap	UTSW	16	26,530,969 (GRCm39)	missense	probably damaging	1.00
R6233:Il1rap	UTSW	16	26,529,256 (GRCm39)	missense	probably benign	0.24
R6246:Il1rap	UTSW	16	26,533,631 (GRCm39)	missense	probably benign
R6249:Il1rap	UTSW	16	26,511,598 (GRCm39)	missense	possibly damaging	0.88
R6254:Il1rap	UTSW	16	26,514,020 (GRCm39)	missense	probably benign
R6748:Il1rap	UTSW	16	26,541,106 (GRCm39)	missense	probably benign	0.02
R7151:Il1rap	UTSW	16	26,530,878 (GRCm39)	missense	probably damaging	1.00
R7794:Il1rap	UTSW	16	26,541,658 (GRCm39)	missense	probably benign
R7818:Il1rap	UTSW	16	26,517,597 (GRCm39)	missense	probably damaging	1.00
R7819:Il1rap	UTSW	16	26,541,151 (GRCm39)	missense	possibly damaging	0.77
R7863:Il1rap	UTSW	16	26,495,461 (GRCm39)	missense	probably damaging	1.00
R8240:Il1rap	UTSW	16	26,520,001 (GRCm39)	missense	probably benign
R8559:Il1rap	UTSW	16	26,530,884 (GRCm39)	missense	probably benign	0.29
R8934:Il1rap	UTSW	16	26,495,734 (GRCm39)	missense	probably damaging	1.00
R8986:Il1rap	UTSW	16	26,533,696 (GRCm39)	missense	probably damaging	1.00
R9261:Il1rap	UTSW	16	26,541,724 (GRCm39)	missense	possibly damaging	0.83
R9286:Il1rap	UTSW	16	26,517,604 (GRCm39)	missense	possibly damaging	0.89
R9326:Il1rap	UTSW	16	26,495,641 (GRCm39)	missense	probably damaging	1.00
R9408:Il1rap	UTSW	16	26,533,675 (GRCm39)	missense	possibly damaging	0.91
R9493:Il1rap	UTSW	16	26,541,702 (GRCm39)	missense	probably benign	0.00
R9723:Il1rap	UTSW	16	26,442,907 (GRCm39)	start codon destroyed	probably null	0.97
X0027:Il1rap	UTSW	16	26,519,897 (GRCm39)	missense	probably benign	0.20
X0028:Il1rap	UTSW	16	26,495,714 (GRCm39)	missense	probably damaging	1.00
Z1176:Il1rap	UTSW	16	26,541,149 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACATCACAGGCCTCAGTTTAG -3'
(R):5'- CTGCACTGCTTAAGGTGTGG -3'

Sequencing Primer
(F):5'- GCCTCAGTTTAGTGGCACC -3'
(R):5'- GCCACCGGGTGTCTAGAATCTTC -3'

Posted On

2017-05-26