Incidental Mutation 'R5371:Vstm2b'
ID478308
Institutional Source Beutler Lab
Gene Symbol Vstm2b
Ensembl Gene ENSMUSG00000039257
Gene NameV-set and transmembrane domain containing 2B
Synonyms2900093B09Rik
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.068) question?
Stock #R5371 (G1)
Quality Score212
Status Validated
Chromosome7
Chromosomal Location40898328-40930594 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 40901278 bp
ZygosityHeterozygous
Amino Acid Change Serine to Asparagine at position 99 (S99N)
Ref Sequence ENSEMBL: ENSMUSP00000146231 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000044705] [ENSMUST00000186352] [ENSMUST00000205845] [ENSMUST00000206223]
Predicted Effect possibly damaging
Transcript: ENSMUST00000044705
AA Change: S99N

PolyPhen 2 Score 0.843 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000044002
Gene: ENSMUSG00000039257
AA Change: S99N

DomainStartEndE-ValueType
low complexity region 7 23 N/A INTRINSIC
IG 34 149 1.84e-11 SMART
low complexity region 175 189 N/A INTRINSIC
low complexity region 202 247 N/A INTRINSIC
low complexity region 267 283 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000186352
SMART Domains Protein: ENSMUSP00000140241
Gene: ENSMUSG00000039257

DomainStartEndE-ValueType
IG 15 110 1.7e-2 SMART
low complexity region 136 150 N/A INTRINSIC
low complexity region 163 184 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000188579
Predicted Effect noncoding transcript
Transcript: ENSMUST00000189574
Predicted Effect possibly damaging
Transcript: ENSMUST00000205845
AA Change: S99N

PolyPhen 2 Score 0.843 (Sensitivity: 0.83; Specificity: 0.93)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205953
Predicted Effect probably benign
Transcript: ENSMUST00000206223
Meta Mutation Damage Score 0.142 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.6%
Validation Efficiency 96% (71/74)
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930432E11Rik G T 7: 29,562,493 noncoding transcript Het
Arpp21 G A 9: 112,065,932 P755S probably benign Het
Aspm C T 1: 139,470,541 Q982* probably null Het
Atp5e C T 2: 174,462,526 probably benign Het
BC024139 A G 15: 76,120,686 *598Q probably null Het
Bcl6 T A 16: 23,969,986 D544V possibly damaging Het
Ccdc9 A T 7: 16,280,730 D195E probably damaging Het
Cd38 A G 5: 43,868,883 N3S probably benign Het
Cfap46 A T 7: 139,632,181 probably null Het
Cmtr2 T C 8: 110,221,412 F118S probably damaging Het
Cyp7a1 A G 4: 6,268,378 F449S probably damaging Het
Dnah10 C T 5: 124,743,629 A509V probably benign Het
Dsp A T 13: 38,194,889 Q1271L probably damaging Het
E330021D16Rik T A 6: 136,401,373 Y153F probably benign Het
Edar A C 10: 58,607,452 V284G possibly damaging Het
Fdft1 A G 14: 63,151,301 V294A probably damaging Het
Gba T A 3: 89,205,471 V140E probably benign Het
Gm12185 A T 11: 48,915,739 S208R probably benign Het
Gm21028 C A 7: 42,578,522 E23* probably null Het
Gm6871 A G 7: 41,573,568 L32P probably benign Het
Hhip C T 8: 79,997,591 V341M probably damaging Het
Kcnq2 C A 2: 181,135,020 V25L probably damaging Het
Krit1 C A 5: 3,831,551 H548N probably damaging Het
Kynu C T 2: 43,589,394 A100V probably benign Het
Lpp T C 16: 24,889,804 C295R probably damaging Het
Mdp1 A G 14: 55,660,349 V9A probably damaging Het
Mllt3 T C 4: 87,840,856 I318M possibly damaging Het
Mpzl3 A G 9: 45,055,212 probably benign Het
Mroh2a A G 1: 88,258,664 S64G probably benign Het
Mup8 A G 4: 60,222,423 V16A probably benign Het
Myh13 T A 11: 67,344,790 probably null Het
Myh4 A T 11: 67,259,324 Q1869L probably damaging Het
Nt5c G A 11: 115,490,817 probably null Het
Olfr1173 C A 2: 88,274,632 C139F probably damaging Het
Olfr156 A T 4: 43,821,058 M101K probably damaging Het
Olfr573-ps1 T A 7: 102,942,512 M22L probably benign Het
Olfr908 CACAACAACA CACAACA 9: 38,516,138 probably benign Het
Parp11 T C 6: 127,470,792 F30L probably damaging Het
Pcdhgc3 A T 18: 37,808,454 D636V possibly damaging Het
Ppp1cb T C 5: 32,485,988 F234L probably damaging Het
Rras2 A T 7: 114,050,337 V164E probably damaging Het
Rsf1 GCGGCGGCG GCGGCGGCGACGGCGGCG 7: 97,579,913 probably benign Het
Scg3 T C 9: 75,661,301 T390A probably damaging Het
Shh C A 5: 28,466,690 C25F probably damaging Het
Slc24a1 T C 9: 64,949,268 K119R unknown Het
Speg G T 1: 75,431,393 R3244L possibly damaging Het
Spns1 A G 7: 126,373,764 probably benign Het
Sptbn4 A C 7: 27,359,741 probably null Het
Stap1 T A 5: 86,096,516 F214Y possibly damaging Het
Tcerg1 T A 18: 42,519,535 M76K unknown Het
Tjp1 A T 7: 65,313,311 Y959* probably null Het
Tmprss11e A T 5: 86,727,366 C14S probably benign Het
Tnfrsf14 T C 4: 154,922,477 probably null Het
Tsfm A C 10: 127,011,643 V193G probably benign Het
Ush2a A T 1: 188,443,070 I1122L probably benign Het
Vmn1r74 T A 7: 11,847,057 S95T probably damaging Het
Vmn2r98 G A 17: 19,069,753 C517Y probably damaging Het
Zbtb24 A G 10: 41,451,541 N141S probably benign Het
Zcchc4 T G 5: 52,785,170 C106G probably benign Het
Other mutations in Vstm2b
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03026:Vstm2b APN 7 40902521 nonsense probably null
R0418:Vstm2b UTSW 7 40902452 missense probably damaging 1.00
R0563:Vstm2b UTSW 7 40902475 missense probably damaging 1.00
R2519:Vstm2b UTSW 7 40902875 missense probably benign 0.33
R5194:Vstm2b UTSW 7 40902488 splice site probably null
R5436:Vstm2b UTSW 7 40901283 splice site probably null
R5580:Vstm2b UTSW 7 40902626 missense probably damaging 1.00
R5915:Vstm2b UTSW 7 40902683 missense possibly damaging 0.66
R6293:Vstm2b UTSW 7 40900109 missense probably damaging 1.00
R7048:Vstm2b UTSW 7 40929376 missense possibly damaging 0.92
Predicted Primers PCR Primer
(F):5'- AAAGACAGGTCAGAGGTTTCC -3'
(R):5'- TCCCTCTACTAGCGACAGATG -3'

Sequencing Primer
(F):5'- GAGGTTTCCGTGCACAAAAATGTC -3'
(R):5'- GACAGATGGCGCCCAGATAC -3'
Posted On2017-06-23