Mutagenetix > Incidental Mutation

Incidental Mutation 'R6020:Ccdc8'

478863

Institutional Source

Beutler Lab

Gene Symbol

Ccdc8

Ensembl Gene

ENSMUSG00000041117

Gene Name

coiled-coil domain containing 8

Synonyms

ENSMUSG00000041117

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6020 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

16992708-16997516 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 16996581 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Histidine at position 665 (L665H)

Ref Sequence

ENSEMBL: ENSMUSP00000092399 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094805]

AlphaFold

D3YZV8

Predicted Effect

probably damaging
Transcript: ENSMUST00000094805
AA Change: L665H

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000092399
Gene: ENSMUSG00000041117
AA Change: L665H

Domain	Start	End	E-Value	Type
Pfam:PNMA	1	98	1.3e-19	PFAM
low complexity region	166	171	N/A	INTRINSIC
internal_repeat_1	207	275	5.53e-5	PROSPERO
low complexity region	297	332	N/A	INTRINSIC
low complexity region	335	420	N/A	INTRINSIC
low complexity region	430	452	N/A	INTRINSIC
low complexity region	458	468	N/A	INTRINSIC
low complexity region	478	540	N/A	INTRINSIC
internal_repeat_1	566	640	5.53e-5	PROSPERO
low complexity region	646	658	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.8%
20x: 93.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a coiled-coil domain-containing protein. The encoded protein functions as a cofactor required for p53-mediated apoptosis following DNA damage, and may also play a role in growth through interactions with the cytoskeletal adaptor protein obscurin-like 1. Mutations in this gene are a cause of 3M syndrome-3 (3M3). [provided by RefSeq, Dec 2011]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	C	A	11: 110,145,613	V557F	possibly damaging	Het
Abi3	A	T	11: 95,842,025	L41*	probably null	Het
Actn1	C	A	12: 80,174,455		probably null	Het
Adamts15	G	T	9: 30,902,062	R936S	probably benign	Het
Angel2	T	C	1: 190,932,871	S22P	probably benign	Het
Ank2	T	G	3: 126,946,821		probably benign	Het
Astn1	A	G	1: 158,509,993	D423G	probably damaging	Het
Casp9	A	G	4: 141,796,538	D78G	probably damaging	Het
Cbr4	A	G	8: 61,487,853	D2G	probably benign	Het
Cdh23	T	A	10: 60,331,326	N1847I	probably damaging	Het
Cnst	T	C	1: 179,609,875	W335R	probably benign	Het
Ddr2	T	A	1: 170,005,102	I130F	probably benign	Het
Dnah2	C	T	11: 69,500,839	A677T	probably benign	Het
Dzip3	C	A	16: 48,951,842	W488L	probably damaging	Het
Ephb3	T	G	16: 21,222,013	I637S	probably damaging	Het
Etv3	A	G	3: 87,529,364	D142G	probably benign	Het
Fabp5	C	T	3: 10,016,089	T126I	probably benign	Het
Fam13b	A	C	18: 34,494,774	Y125D	probably damaging	Het
Fsip2	C	A	2: 82,992,127	P6068Q	probably damaging	Het
Gm11232	A	G	4: 71,756,668	F199S	possibly damaging	Het
Gm340	G	A	19: 41,583,547	G247D	possibly damaging	Het
Gm5493	A	G	17: 22,748,061	K57E	probably benign	Het
Gm7334	A	G	17: 50,699,237	M184V	probably benign	Het
Gm9894	T	C	13: 67,763,835		noncoding transcript	Het
Gpd2	T	A	2: 57,364,513	N674K	probably benign	Het
H2-M10.6	A	G	17: 36,813,067	Y141C	probably damaging	Het
Heatr5a	C	T	12: 51,884,327	E1796K	probably benign	Het
Hexim2	A	G	11: 103,138,292	T57A	probably benign	Het
Hrg	A	T	16: 22,954,518	N134Y	probably damaging	Het
Hsd17b12	T	C	2: 94,033,977	T262A	probably damaging	Het
Irak3	G	T	10: 120,143,137	P470T	probably damaging	Het
Itgbl1	A	T	14: 123,846,565	D285V	probably damaging	Het
Kcp	A	T	6: 29,502,864	V164E	probably benign	Het
Klhdc7b	T	A	15: 89,388,386	M1157K	probably damaging	Het
Mdc1	G	A	17: 35,848,633	G635D	probably benign	Het
Mdc1	A	G	17: 35,857,572	K1690R	probably benign	Het
Mpp3	A	T	11: 102,018,539		probably benign	Het
Ncor2	G	T	5: 125,020,011	H2285N	probably benign	Het
Neb	T	A	2: 52,257,827	T2727S	probably benign	Het
Nkx6-2	T	C	7: 139,581,567	D234G	possibly damaging	Het
Nlrp9c	T	C	7: 26,384,725	I476M	probably benign	Het
Nrsn1	T	G	13: 25,253,372	Q191P	probably damaging	Het
Olfr116	A	T	17: 37,623,967	S223T	possibly damaging	Het
Olfr390	C	T	11: 73,787,552	L205F	probably benign	Het
Olfr610	T	A	7: 103,506,799	H49L	probably benign	Het
Patl1	T	G	19: 11,937,354	L623R	probably damaging	Het
Pdc	T	C	1: 150,333,366	I200T	probably benign	Het
Pdzk1	A	G	3: 96,868,426	D370G	probably benign	Het
Pglyrp3	A	T	3: 92,031,534	I339F	probably damaging	Het
Plxnb1	T	C	9: 109,116,611	V2070A	probably damaging	Het
Poln	G	A	5: 34,109,431	R461C	probably damaging	Het
Prl2b1	C	A	13: 27,383,508	V218L	probably damaging	Het
Pygl	T	C	12: 70,216,654	D55G	probably damaging	Het
Rif1	C	G	2: 52,095,844	L614V	probably damaging	Het
Rnd2	C	T	11: 101,468,999	L57F	probably damaging	Het
RP24-351P7.8	T	C	7: 11,610,301	F62S	probably damaging	Het
Rsrp1	T	C	4: 134,924,381	F152S	probably damaging	Het
Sim2	T	C	16: 94,097,251	S115P	probably damaging	Het
Slc17a1	T	A	13: 23,875,610	I108K	possibly damaging	Het
Slc30a8	A	G	15: 52,325,658	D223G	probably damaging	Het
Slc39a4	A	T	15: 76,616,142	N69K	probably benign	Het
Slc51a	T	G	16: 32,479,766	T58P	probably damaging	Het
Slc7a14	T	C	3: 31,224,112	H448R	probably benign	Het
Smc3	G	A	19: 53,625,163		probably null	Het
Sox6	A	T	7: 115,486,628	D659E	probably damaging	Het
Stard9	GCCC	GCC	2: 120,693,715		probably null	Het
Tsr1	C	T	11: 74,900,293		probably null	Het
Ttc12	T	C	9: 49,443,122	K565E	probably damaging	Het
Ube4b	A	T	4: 149,368,311	V386E	probably benign	Het
Ush2a	T	A	1: 188,728,096		probably null	Het
Usp5	C	A	6: 124,817,613		probably benign	Het
Vmn1r216	T	C	13: 23,099,935	F263L	probably benign	Het
Vmn2r88	T	A	14: 51,418,149	L606*	probably null	Het
Wee2	T	A	6: 40,449,620		probably null	Het
Zfhx3	T	C	8: 108,792,527	Y94H	probably damaging	Het
Zfp385c	G	A	11: 100,632,768	P120L	probably benign	Het

Other mutations in Ccdc8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00333:Ccdc8	APN	7	16996042	missense	unknown
R0255:Ccdc8	UTSW	7	16995657	missense	unknown
R0504:Ccdc8	UTSW	7	16996014	missense	unknown
R3843:Ccdc8	UTSW	7	16995114	missense	probably damaging	1.00
R5054:Ccdc8	UTSW	7	16995045	missense	probably damaging	1.00
R6045:Ccdc8	UTSW	7	16996031	missense	unknown
R6244:Ccdc8	UTSW	7	16996251	missense	probably benign	0.04
R6753:Ccdc8	UTSW	7	16996637	nonsense	probably null
R7299:Ccdc8	UTSW	7	16996031	missense	unknown
R7567:Ccdc8	UTSW	7	16994762	missense	probably damaging	1.00
R7623:Ccdc8	UTSW	7	16996612	missense	possibly damaging	0.70
R7745:Ccdc8	UTSW	7	16995689	missense	unknown
R8310:Ccdc8	UTSW	7	16995401	missense	probably damaging	1.00
R8707:Ccdc8	UTSW	7	16996050	missense	unknown
R8840:Ccdc8	UTSW	7	16994717	missense	probably damaging	1.00
R9099:Ccdc8	UTSW	7	16994875	nonsense	probably null
R9630:Ccdc8	UTSW	7	16994808	missense	possibly damaging	0.91
R9696:Ccdc8	UTSW	7	16996162	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TCCATGACCAGAGGGAGGA -3'
(R):5'- GTGCTGCCTGACCCCTCA -3'

Sequencing Primer
(F):5'- CTCAGGGTATACAGGAAGCCTC -3'
(R):5'- CAGTAGCTAACAAAGGCAG -3'

Posted On

2017-06-26