Mutagenetix > Incidental Mutation

Incidental Mutation 'R6020:Tsr1'

478877

Institutional Source

Beutler Lab

Gene Symbol

Tsr1

Ensembl Gene

ENSMUSG00000038335

Gene Name

TSR1 20S rRNA accumulation

Synonyms

Accession Numbers

Essential gene?

Probably essential (E-score: 0.962) question?

Stock #

R6020 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

74898071-74909342 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

C to T at 74900293 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000080489 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045807] [ENSMUST00000057631] [ENSMUST00000081799] [ENSMUST00000128230] [ENSMUST00000153316] [ENSMUST00000155702]

AlphaFold

Q5SWD9

Predicted Effect

probably damaging
Transcript: ENSMUST00000045807
AA Change: L233F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000039027
Gene: ENSMUSG00000038335
AA Change: L233F

Domain	Start	End	E-Value	Type
low complexity region	16	25	N/A	INTRINSIC
AARP2CN	228	309	1.14e-28	SMART
low complexity region	373	383	N/A	INTRINSIC
low complexity region	407	421	N/A	INTRINSIC
low complexity region	429	452	N/A	INTRINSIC
coiled coil region	453	478	N/A	INTRINSIC
DUF663	486	772	2.6e-179	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000057631

SMART Domains

Protein: ENSMUSP00000050496
Gene: ENSMUSG00000038351

Domain	Start	End	E-Value	Type
RUN	128	188	4.3e-18	SMART
low complexity region	453	476	N/A	INTRINSIC
TBC	563	965	3.57e-34	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000081799

SMART Domains

Protein: ENSMUSP00000080489
Gene: ENSMUSG00000038351

Domain	Start	End	E-Value	Type
RUN	128	188	4.3e-18	SMART
low complexity region	446	453	N/A	INTRINSIC
low complexity region	498	521	N/A	INTRINSIC
TBC	608	1010	3.57e-34	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000128230

SMART Domains

Protein: ENSMUSP00000121384
Gene: ENSMUSG00000038335

Domain	Start	End	E-Value	Type
low complexity region	16	25	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130910

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144019

Predicted Effect

probably benign
Transcript: ENSMUST00000153316

Predicted Effect

probably benign
Transcript: ENSMUST00000155702

SMART Domains

Protein: ENSMUSP00000119868
Gene: ENSMUSG00000038335

Domain	Start	End	E-Value	Type
low complexity region	16	25	N/A	INTRINSIC
low complexity region	39	58	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155785

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.8%
20x: 93.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	C	A	11: 110,145,613	V557F	possibly damaging	Het
Abi3	A	T	11: 95,842,025	L41*	probably null	Het
Actn1	C	A	12: 80,174,455		probably null	Het
Adamts15	G	T	9: 30,902,062	R936S	probably benign	Het
Angel2	T	C	1: 190,932,871	S22P	probably benign	Het
Ank2	T	G	3: 126,946,821		probably benign	Het
Astn1	A	G	1: 158,509,993	D423G	probably damaging	Het
Casp9	A	G	4: 141,796,538	D78G	probably damaging	Het
Cbr4	A	G	8: 61,487,853	D2G	probably benign	Het
Ccdc8	T	A	7: 16,996,581	L665H	probably damaging	Het
Cdh23	T	A	10: 60,331,326	N1847I	probably damaging	Het
Cnst	T	C	1: 179,609,875	W335R	probably benign	Het
Ddr2	T	A	1: 170,005,102	I130F	probably benign	Het
Dnah2	C	T	11: 69,500,839	A677T	probably benign	Het
Dzip3	C	A	16: 48,951,842	W488L	probably damaging	Het
Ephb3	T	G	16: 21,222,013	I637S	probably damaging	Het
Etv3	A	G	3: 87,529,364	D142G	probably benign	Het
Fabp5	C	T	3: 10,016,089	T126I	probably benign	Het
Fam13b	A	C	18: 34,494,774	Y125D	probably damaging	Het
Fsip2	C	A	2: 82,992,127	P6068Q	probably damaging	Het
Gm11232	A	G	4: 71,756,668	F199S	possibly damaging	Het
Gm340	G	A	19: 41,583,547	G247D	possibly damaging	Het
Gm5493	A	G	17: 22,748,061	K57E	probably benign	Het
Gm7334	A	G	17: 50,699,237	M184V	probably benign	Het
Gm9894	T	C	13: 67,763,835		noncoding transcript	Het
Gpd2	T	A	2: 57,364,513	N674K	probably benign	Het
H2-M10.6	A	G	17: 36,813,067	Y141C	probably damaging	Het
Heatr5a	C	T	12: 51,884,327	E1796K	probably benign	Het
Hexim2	A	G	11: 103,138,292	T57A	probably benign	Het
Hrg	A	T	16: 22,954,518	N134Y	probably damaging	Het
Hsd17b12	T	C	2: 94,033,977	T262A	probably damaging	Het
Irak3	G	T	10: 120,143,137	P470T	probably damaging	Het
Itgbl1	A	T	14: 123,846,565	D285V	probably damaging	Het
Kcp	A	T	6: 29,502,864	V164E	probably benign	Het
Klhdc7b	T	A	15: 89,388,386	M1157K	probably damaging	Het
Mdc1	G	A	17: 35,848,633	G635D	probably benign	Het
Mdc1	A	G	17: 35,857,572	K1690R	probably benign	Het
Mpp3	A	T	11: 102,018,539		probably benign	Het
Ncor2	G	T	5: 125,020,011	H2285N	probably benign	Het
Neb	T	A	2: 52,257,827	T2727S	probably benign	Het
Nkx6-2	T	C	7: 139,581,567	D234G	possibly damaging	Het
Nlrp9c	T	C	7: 26,384,725	I476M	probably benign	Het
Nrsn1	T	G	13: 25,253,372	Q191P	probably damaging	Het
Olfr116	A	T	17: 37,623,967	S223T	possibly damaging	Het
Olfr390	C	T	11: 73,787,552	L205F	probably benign	Het
Olfr610	T	A	7: 103,506,799	H49L	probably benign	Het
Patl1	T	G	19: 11,937,354	L623R	probably damaging	Het
Pdc	T	C	1: 150,333,366	I200T	probably benign	Het
Pdzk1	A	G	3: 96,868,426	D370G	probably benign	Het
Pglyrp3	A	T	3: 92,031,534	I339F	probably damaging	Het
Plxnb1	T	C	9: 109,116,611	V2070A	probably damaging	Het
Poln	G	A	5: 34,109,431	R461C	probably damaging	Het
Prl2b1	C	A	13: 27,383,508	V218L	probably damaging	Het
Pygl	T	C	12: 70,216,654	D55G	probably damaging	Het
Rif1	C	G	2: 52,095,844	L614V	probably damaging	Het
Rnd2	C	T	11: 101,468,999	L57F	probably damaging	Het
RP24-351P7.8	T	C	7: 11,610,301	F62S	probably damaging	Het
Rsrp1	T	C	4: 134,924,381	F152S	probably damaging	Het
Sim2	T	C	16: 94,097,251	S115P	probably damaging	Het
Slc17a1	T	A	13: 23,875,610	I108K	possibly damaging	Het
Slc30a8	A	G	15: 52,325,658	D223G	probably damaging	Het
Slc39a4	A	T	15: 76,616,142	N69K	probably benign	Het
Slc51a	T	G	16: 32,479,766	T58P	probably damaging	Het
Slc7a14	T	C	3: 31,224,112	H448R	probably benign	Het
Smc3	G	A	19: 53,625,163		probably null	Het
Sox6	A	T	7: 115,486,628	D659E	probably damaging	Het
Stard9	GCCC	GCC	2: 120,693,715		probably null	Het
Ttc12	T	C	9: 49,443,122	K565E	probably damaging	Het
Ube4b	A	T	4: 149,368,311	V386E	probably benign	Het
Ush2a	T	A	1: 188,728,096		probably null	Het
Usp5	C	A	6: 124,817,613		probably benign	Het
Vmn1r216	T	C	13: 23,099,935	F263L	probably benign	Het
Vmn2r88	T	A	14: 51,418,149	L606*	probably null	Het
Wee2	T	A	6: 40,449,620		probably null	Het
Zfhx3	T	C	8: 108,792,527	Y94H	probably damaging	Het
Zfp385c	G	A	11: 100,632,768	P120L	probably benign	Het

Other mutations in Tsr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02568:Tsr1	APN	11	74900378	missense	probably benign	0.19
IGL02959:Tsr1	APN	11	74900249	missense	probably benign	0.00
IGL03230:Tsr1	APN	11	74900471	missense	probably benign	0.00
IGL03358:Tsr1	APN	11	74903998	missense	probably benign	0.13
R0684:Tsr1	UTSW	11	74907941	missense	probably damaging	1.00
R1452:Tsr1	UTSW	11	74899599	missense	probably benign	0.21
R1484:Tsr1	UTSW	11	74902088	missense	probably damaging	1.00
R1831:Tsr1	UTSW	11	74900356	missense	probably benign	0.00
R2166:Tsr1	UTSW	11	74907454	splice site	probably null
R2185:Tsr1	UTSW	11	74902080	missense	probably damaging	1.00
R2273:Tsr1	UTSW	11	74904827	critical splice acceptor site	probably null
R2274:Tsr1	UTSW	11	74904827	critical splice acceptor site	probably null
R2275:Tsr1	UTSW	11	74904827	critical splice acceptor site	probably null
R2289:Tsr1	UTSW	11	74899285	missense	probably damaging	0.98
R3606:Tsr1	UTSW	11	74905233	missense	probably benign	0.01
R4928:Tsr1	UTSW	11	74907879	missense	probably benign
R5260:Tsr1	UTSW	11	74905955	missense	probably damaging	1.00
R6743:Tsr1	UTSW	11	74908351	missense	probably benign	0.00
R7068:Tsr1	UTSW	11	74903919	nonsense	probably null
R7117:Tsr1	UTSW	11	74899534	missense	probably benign
R7868:Tsr1	UTSW	11	74900332	missense	possibly damaging	0.66
R8392:Tsr1	UTSW	11	74900270	missense	probably benign	0.40
R8734:Tsr1	UTSW	11	74903826	missense	probably benign
R8767:Tsr1	UTSW	11	74908323	missense	probably damaging	0.96
R8904:Tsr1	UTSW	11	74899391	nonsense	probably null
R9261:Tsr1	UTSW	11	74908230	missense	probably damaging	1.00
R9295:Tsr1	UTSW	11	74908309	missense	probably damaging	1.00
R9345:Tsr1	UTSW	11	74899300	missense	probably benign	0.03
R9802:Tsr1	UTSW	11	74908399	missense	possibly damaging	0.54
X0010:Tsr1	UTSW	11	74903874	missense	possibly damaging	0.78
X0026:Tsr1	UTSW	11	74900227	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- ACAATGACTTCCTGCGCTC -3'
(R):5'- GGATCCACAGGAGCATCTATTTG -3'

Sequencing Primer
(F):5'- AATGACTTCCTGCGCTCTTCTC -3'
(R):5'- TTTGGAAATCACCGTGTCCAAC -3'

Posted On

2017-06-26