Mutagenetix > Incidental Mutation

Incidental Mutation 'R6005:Hs3st5'

479432

Institutional Source

Beutler Lab

Gene Symbol

Hs3st5

Ensembl Gene

ENSMUSG00000044499

Gene Name

heparan sulfate (glucosamine) 3-O-sulfotransferase 5

Synonyms

LOC382362, D930005L05Rik

MMRRC Submission

044425-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6005 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

36506814-36834397 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 36832928 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 153 (I153N)

Ref Sequence

ENSEMBL: ENSMUSP00000129434 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000058738] [ENSMUST00000167191] [ENSMUST00000168572]

AlphaFold

Q8BSL4

Predicted Effect

probably damaging
Transcript: ENSMUST00000058738
AA Change: I153N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000060229
Gene: ENSMUSG00000044499
AA Change: I153N

Domain	Start	End	E-Value	Type
transmembrane domain	13	32	N/A	INTRINSIC
Pfam:Sulfotransfer_1	90	339	5.5e-38	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000167191
AA Change: I153N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000130778
Gene: ENSMUSG00000044499
AA Change: I153N

Domain	Start	End	E-Value	Type
transmembrane domain	13	32	N/A	INTRINSIC
Pfam:Sulfotransfer_1	90	339	5.5e-38	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000168572
AA Change: I153N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000129434
Gene: ENSMUSG00000044499
AA Change: I153N

Domain	Start	End	E-Value	Type
transmembrane domain	13	32	N/A	INTRINSIC
Pfam:Sulfotransfer_1	90	339	5.5e-38	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.4%
10x: 97.2%
20x: 90.9%

Validation Efficiency

99% (79/80)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] HS3ST5 belongs to a group of heparan sulfate 3-O-sulfotransferases (EC 2.8.2.23) that transfer sulfate from 3-prime-phosphoadenosine 5-prime phosphosulfate (PAPS) to heparan sulfate and heparin (Mochizuki et al., 2003 [PubMed 12740361]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810006K23Rik	G	T	5: 124,340,774 (GRCm38)	E153*	probably null	Het
4930412O13Rik	T	C	2: 9,882,827 (GRCm38)		probably benign	Het
7530416G11Rik	A	T	15: 85,494,109 (GRCm38)	I111N	unknown	Het
Adgb	C	T	10: 10,395,352 (GRCm38)	R849H	probably damaging	Het
Ahnak	T	C	19: 9,015,161 (GRCm38)	V4603A	possibly damaging	Het
AI464131	T	A	4: 41,498,895 (GRCm38)	H245L	probably benign	Het
Ank1	A	G	8: 23,132,202 (GRCm38)	D1589G	probably damaging	Het
Ankrd2	A	G	19: 42,040,115 (GRCm38)	D70G	probably damaging	Het
Arid2	T	C	15: 96,370,972 (GRCm38)	S989P	probably benign	Het
Bbs1	A	T	19: 4,903,795 (GRCm38)	Y113*	probably null	Het
Bfsp2	T	G	9: 103,448,550 (GRCm38)	K298T	probably damaging	Het
Bpi	G	A	2: 158,262,480 (GRCm38)	V168I	possibly damaging	Het
Cacna2d1	T	C	5: 16,361,821 (GRCm38)	S921P	probably damaging	Het
Clec4d	A	C	6: 123,267,159 (GRCm38)	T76P	probably damaging	Het
Coq8b	C	T	7: 27,257,325 (GRCm38)	Q468*	probably null	Het
Dennd6b	T	C	15: 89,188,168 (GRCm38)	E248G	possibly damaging	Het
Ednra	A	G	8: 77,674,927 (GRCm38)	S245P	possibly damaging	Het
Epb41l4a	C	T	18: 33,828,143 (GRCm38)	C446Y	probably benign	Het
Fam221a	A	G	6: 49,367,822 (GRCm38)		probably benign	Het
Fam229a	T	C	4: 129,491,503 (GRCm38)	S76P	probably benign	Het
Fryl	C	T	5: 73,083,295 (GRCm38)	D1321N	probably damaging	Het
Gli2	C	T	1: 118,842,064 (GRCm38)	R586H	probably damaging	Het
Gm13089	T	A	4: 143,698,432 (GRCm38)	H147L	probably benign	Het
Gm94	C	T	18: 43,792,797 (GRCm38)	A16T	possibly damaging	Het
Gorasp2	T	C	2: 70,690,751 (GRCm38)	V355A	probably benign	Het
Grid1	C	A	14: 35,323,412 (GRCm38)	T404N	probably damaging	Het
Gtf2i	C	A	5: 134,255,958 (GRCm38)	E475*	probably null	Het
Gucy1a2	T	C	9: 3,865,518 (GRCm38)		probably null	Het
Il11ra1	T	C	4: 41,763,887 (GRCm38)		probably null	Het
Ireb2	G	A	9: 54,908,805 (GRCm38)	G887S	probably damaging	Het
Kdsr	T	C	1: 106,734,581 (GRCm38)	E248G	probably benign	Het
Lemd2	C	G	17: 27,190,785 (GRCm38)	R464P	probably damaging	Het
Lrrfip1	T	C	1: 91,114,611 (GRCm38)	V246A	probably damaging	Het
Macf1	T	A	4: 123,474,275 (GRCm38)	D2231V	possibly damaging	Het
Map2k5	C	T	9: 63,281,019 (GRCm38)	D283N	probably damaging	Het
Mfsd5	A	G	15: 102,281,492 (GRCm38)	D433G	possibly damaging	Het
Mir700	C	A	4: 135,412,307 (GRCm38)		probably null	Het
Mroh9	A	T	1: 163,075,677 (GRCm38)	F52L	probably damaging	Het
Mycbp2	A	C	14: 103,156,723 (GRCm38)	S2691A	probably benign	Het
Nktr	T	A	9: 121,748,394 (GRCm38)		probably benign	Het
Obsl1	C	A	1: 75,492,215 (GRCm38)		probably null	Het
Olfr1130	A	T	2: 87,608,080 (GRCm38)	I231F	probably damaging	Het
Olfr251	T	C	9: 38,378,309 (GRCm38)	S137P	probably damaging	Het
Olfr259	A	G	2: 87,108,063 (GRCm38)	V108A	probably benign	Het
Olfr582	A	T	7: 103,041,646 (GRCm38)	I51F	probably damaging	Het
Olfr855	C	T	9: 19,584,885 (GRCm38)	T116I	probably benign	Het
Pcdhb22	T	A	18: 37,519,736 (GRCm38)	I162N	possibly damaging	Het
Pde1c	A	T	6: 56,479,202 (GRCm38)		probably null	Het
Pds5b	A	G	5: 150,769,776 (GRCm38)		probably null	Het
Pkd1l1	A	C	11: 8,857,113 (GRCm38)	W1568G	probably damaging	Het
Polr3c	A	T	3: 96,719,468 (GRCm38)	M258K	possibly damaging	Het
Prss12	A	T	3: 123,482,768 (GRCm38)	I349F	probably benign	Het
Ptpn21	A	G	12: 98,678,552 (GRCm38)	*1177Q	probably null	Het
Rgs22	T	A	15: 36,010,567 (GRCm38)	K1125M	probably benign	Het
Rnf182	A	G	13: 43,668,035 (GRCm38)	K21E	probably damaging	Het
Rpl6	G	A	5: 121,205,514 (GRCm38)		probably benign	Het
Samsn1	C	T	16: 75,873,514 (GRCm38)	V234I	probably benign	Het
Scrib	A	G	15: 76,057,751 (GRCm38)	I1089T	probably damaging	Het
Sec31a	T	C	5: 100,363,878 (GRCm38)	T1092A	probably damaging	Het
Sh3bp2	G	T	5: 34,562,465 (GRCm38)	R606L	possibly damaging	Het
Sipa1	A	G	19: 5,656,201 (GRCm38)	V367A	probably damaging	Het
Slc25a44	C	T	3: 88,412,846 (GRCm38)	E269K	probably damaging	Het
Slc44a4	T	A	17: 34,923,454 (GRCm38)	M353K	possibly damaging	Het
Sorcs2	A	G	5: 36,019,384 (GRCm38)	S1142P	probably damaging	Het
Sptbn4	A	G	7: 27,418,599 (GRCm38)	F352L	probably damaging	Het
Synj1	A	T	16: 90,969,286 (GRCm38)	N541K	probably damaging	Het
Tas2r113	G	A	6: 132,893,696 (GRCm38)	R229K	probably benign	Het
Tcaf3	A	T	6: 42,589,971 (GRCm38)	I728K	probably benign	Het
Tcea1	A	G	1: 4,890,773 (GRCm38)	E167G	probably benign	Het
Timeless	G	A	10: 128,244,200 (GRCm38)	R406H	probably damaging	Het
Traf6	C	T	2: 101,696,684 (GRCm38)	R260*	probably null	Het
Traj31	C	T	14: 54,187,931 (GRCm38)		probably benign	Het
Ttn	A	T	2: 76,769,563 (GRCm38)	V19089D	probably damaging	Het
Unc80	C	T	1: 66,627,257 (GRCm38)	S1868L	possibly damaging	Het
Wdr38	A	T	2: 39,001,321 (GRCm38)	I287F	possibly damaging	Het
Wnt2	G	A	6: 18,030,323 (GRCm38)		probably benign	Het
Wnt5b	G	A	6: 119,433,654 (GRCm38)	P288L	probably benign	Het
Xkr5	G	T	8: 18,934,505 (GRCm38)	N174K	probably benign	Het
Zbtb6	C	T	2: 37,428,965 (GRCm38)	R317Q	probably damaging	Het
Zcchc7	AGGGG	AGGG	4: 44,931,218 (GRCm38)		probably null	Het
Zfp647	G	A	15: 76,912,085 (GRCm38)	P125L	probably damaging	Het

Other mutations in Hs3st5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00507:Hs3st5	APN	10	36,832,922 (GRCm38)	missense	probably benign	0.02
IGL00913:Hs3st5	APN	10	36,832,850 (GRCm38)	missense	probably damaging	1.00
IGL01407:Hs3st5	APN	10	36,833,408 (GRCm38)	missense	probably damaging	1.00
IGL01516:Hs3st5	APN	10	36,833,051 (GRCm38)	missense	probably damaging	1.00
IGL02396:Hs3st5	APN	10	36,828,703 (GRCm38)	start codon destroyed	probably benign	0.08
IGL03351:Hs3st5	APN	10	36,833,323 (GRCm38)	missense	probably damaging	1.00
R0606:Hs3st5	UTSW	10	36,832,588 (GRCm38)	missense	probably benign	0.00
R1412:Hs3st5	UTSW	10	36,832,676 (GRCm38)	missense	probably benign	0.02
R1443:Hs3st5	UTSW	10	36,833,414 (GRCm38)	missense	probably benign	0.35
R1493:Hs3st5	UTSW	10	36,832,874 (GRCm38)	missense	probably damaging	1.00
R1768:Hs3st5	UTSW	10	36,833,169 (GRCm38)	missense	probably benign	0.01
R1792:Hs3st5	UTSW	10	36,832,724 (GRCm38)	missense	probably benign
R1991:Hs3st5	UTSW	10	36,832,886 (GRCm38)	missense	probably damaging	1.00
R1992:Hs3st5	UTSW	10	36,832,886 (GRCm38)	missense	probably damaging	1.00
R4330:Hs3st5	UTSW	10	36,832,730 (GRCm38)	missense	probably benign	0.06
R4610:Hs3st5	UTSW	10	36,828,806 (GRCm38)	missense	probably benign	0.26
R5459:Hs3st5	UTSW	10	36,828,746 (GRCm38)	missense	possibly damaging	0.85
R5561:Hs3st5	UTSW	10	36,833,429 (GRCm38)	missense	probably damaging	1.00
R7082:Hs3st5	UTSW	10	36,832,837 (GRCm38)	missense	probably benign	0.01
R7326:Hs3st5	UTSW	10	36,833,194 (GRCm38)	missense	probably damaging	1.00
R7507:Hs3st5	UTSW	10	36,833,015 (GRCm38)	missense	probably damaging	1.00
R7885:Hs3st5	UTSW	10	36,828,780 (GRCm38)	nonsense	probably null
R9147:Hs3st5	UTSW	10	36,832,921 (GRCm38)	missense	probably damaging	0.96
R9372:Hs3st5	UTSW	10	36,832,702 (GRCm38)	nonsense	probably null
R9497:Hs3st5	UTSW	10	36,833,374 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- ATGACCTGGTCCAACAGCTC -3'
(R):5'- TCACAGGTATTAGGGTCTATAGCC -3'

Sequencing Primer
(F):5'- CCCAAAGCCATTATCATTGGGGTG -3'
(R):5'- GGGTCTATAGCCAGTTTTTCAAAC -3'

Posted On

2017-06-26