Incidental Mutation 'R6013:Clec4f'
ID479845
Institutional Source Beutler Lab
Gene Symbol Clec4f
Ensembl Gene ENSMUSG00000014542
Gene NameC-type lectin domain family 4, member f
SynonymsClecsf13, kupffer cell receptor, D18063
MMRRC Submission 044189-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.072) question?
Stock #R6013 (G1)
Quality Score225.009
Status Validated
Chromosome6
Chromosomal Location83644542-83656187 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 83655088 bp
ZygosityHeterozygous
Amino Acid Change Isoleucine to Valine at position 55 (I55V)
Ref Sequence ENSEMBL: ENSMUSP00000014686 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000014686]
Predicted Effect probably benign
Transcript: ENSMUST00000014686
AA Change: I55V

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000014686
Gene: ENSMUSG00000014542
AA Change: I55V

DomainStartEndE-ValueType
transmembrane domain 43 65 N/A INTRINSIC
coiled coil region 99 126 N/A INTRINSIC
low complexity region 390 403 N/A INTRINSIC
CLECT 412 537 5.4e-39 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137647
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.1%
  • 20x: 94.5%
Validation Efficiency 98% (54/55)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired IFN-gamma secretion from Kupffer cells stimulated with alpha-GalCer. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700008P02Rik C T 3: 6,617,250 probably null Het
Aanat A T 11: 116,596,124 probably null Het
Abca17 A T 17: 24,287,846 V1178E possibly damaging Het
Abcf3 T A 16: 20,550,561 probably null Het
Alk A G 17: 71,900,737 M1001T probably benign Het
Arhgap23 C A 11: 97,500,992 S1445Y probably damaging Het
Atp10a T C 7: 58,797,790 I760T probably benign Het
BC030867 T C 11: 102,255,033 V45A probably benign Het
Cadm1 C T 9: 47,857,274 probably benign Het
Car10 A T 11: 93,185,279 probably benign Het
Casq2 G T 3: 102,145,629 probably null Het
Cngb1 T C 8: 95,284,321 probably benign Het
Csn1s2b A G 5: 87,824,239 probably null Het
Cyp2c39 A C 19: 39,513,525 R119S probably benign Het
Cyp4f16 C T 17: 32,546,678 A345V probably null Het
Ddx43 T C 9: 78,414,285 L412S probably damaging Het
Dnajb12 G A 10: 59,894,341 probably null Het
Ephx2 A G 14: 66,110,242 S56P probably benign Het
Fam83h A G 15: 76,004,000 F496S probably damaging Het
Gcnt4 T C 13: 96,947,278 S361P possibly damaging Het
H2-T23 G T 17: 36,030,582 H332Q probably benign Het
Ift57 G T 16: 49,699,304 probably null Het
Il1rl2 A G 1: 40,351,857 H320R possibly damaging Het
Kansl1 A G 11: 104,350,639 V618A probably benign Het
Kctd3 T C 1: 188,996,468 E157G probably benign Het
Magohb T A 6: 131,293,074 D31V possibly damaging Het
Mdn1 C A 4: 32,715,713 F1993L probably damaging Het
Med29 C A 7: 28,386,993 C130F probably benign Het
Mtmr7 G A 8: 40,581,528 R251C probably damaging Het
Ncor1 T C 11: 62,321,077 I49V probably benign Het
Nfkb1 G T 3: 135,626,684 T109K possibly damaging Het
Pkd1l1 A G 11: 8,869,452 probably null Het
Pkp1 T A 1: 135,883,910 T408S probably damaging Het
Plec A T 15: 76,189,310 D501E possibly damaging Het
Ppil2 T C 16: 17,100,265 N96D probably damaging Het
Prcp A C 7: 92,927,768 Y335S possibly damaging Het
Reg2 T A 6: 78,407,969 Y165N possibly damaging Het
Rnf7 T C 9: 96,471,734 *114W probably null Het
Scg3 T C 9: 75,676,808 D137G probably damaging Het
Serpinb7 T C 1: 107,450,189 V204A probably benign Het
Sez6 C T 11: 77,973,797 H528Y probably damaging Het
Sf3b1 A T 1: 55,000,298 S723T probably damaging Het
Shtn1 T C 19: 58,975,101 D594G probably damaging Het
Sptbn4 A G 7: 27,364,479 L2174P probably damaging Het
Stk25 A G 1: 93,625,459 probably null Het
Tep1 A T 14: 50,861,048 F429I probably damaging Het
Thada T A 17: 84,272,800 I1409F probably benign Het
Tmem2 G A 19: 21,832,039 V928I possibly damaging Het
Usp25 G A 16: 77,077,021 G495E probably benign Het
Washc2 A G 6: 116,254,153 S844G probably damaging Het
Xirp2 A T 2: 67,510,943 H1176L possibly damaging Het
Zfand6 C A 7: 84,632,692 V110L probably benign Het
Zfp30 A G 7: 29,789,421 R8G possibly damaging Het
Other mutations in Clec4f
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00434:Clec4f APN 6 83653216 missense possibly damaging 0.79
IGL01112:Clec4f APN 6 83653200 missense probably benign 0.01
IGL02638:Clec4f APN 6 83652700 missense possibly damaging 0.95
R0054:Clec4f UTSW 6 83652929 missense probably benign 0.05
R0054:Clec4f UTSW 6 83652929 missense probably benign 0.05
R0124:Clec4f UTSW 6 83652353 splice site probably null
R0528:Clec4f UTSW 6 83652794 nonsense probably null
R0894:Clec4f UTSW 6 83652997 missense probably damaging 0.99
R1722:Clec4f UTSW 6 83646933 missense probably benign 0.24
R2171:Clec4f UTSW 6 83652864 missense possibly damaging 0.88
R2287:Clec4f UTSW 6 83653265 frame shift probably null
R4296:Clec4f UTSW 6 83652575 nonsense probably null
R4468:Clec4f UTSW 6 83652433 missense probably damaging 1.00
R4751:Clec4f UTSW 6 83645282 missense possibly damaging 0.55
R4967:Clec4f UTSW 6 83656030 start codon destroyed probably null 0.28
R6182:Clec4f UTSW 6 83645302 missense probably benign 0.01
R6330:Clec4f UTSW 6 83652868 missense probably damaging 0.98
R7337:Clec4f UTSW 6 83653208 missense probably benign 0.11
X0026:Clec4f UTSW 6 83653117 missense probably benign 0.29
Z1177:Clec4f UTSW 6 83645221 missense possibly damaging 0.73
Predicted Primers PCR Primer
(F):5'- AAGCCTCCATTCTCGAGAGC -3'
(R):5'- TGTTCTCATCTCTAACGGACAAGTC -3'

Sequencing Primer
(F):5'- CAGTGGGCTCTGTTGACTCCAG -3'
(R):5'- CATCTCTAACGGACAAGTCAGGGG -3'
Posted On2017-06-26