Mutagenetix > Incidental Mutation

Incidental Mutation 'R5997:Ddx1'

480640

Institutional Source

Beutler Lab

Gene Symbol

Ddx1

Ensembl Gene

ENSMUSG00000037149

Gene Name

DEAD box helicase 1

Synonyms

DEAD (Asp-Glu-Ala-Asp) box polypeptide 1

MMRRC Submission

044176-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5997 (G1)

Quality Score

186.009

Status

Validated

Chromosome

Chromosomal Location

13269308-13299175 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 13287800 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 168 (D168G)

Ref Sequence

ENSEMBL: ENSMUSP00000152513 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071103] [ENSMUST00000221623]

AlphaFold

Q91VR5

Predicted Effect

probably benign
Transcript: ENSMUST00000071103
AA Change: D211G

PolyPhen 2 Score 0.073 (Sensitivity: 0.93; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000065987
Gene: ENSMUSG00000037149
AA Change: D211G

Domain	Start	End	E-Value	Type
DEXDc	21	444	1.95e-47	SMART
SPRY	130	246	1.91e-34	SMART
HELICc	520	610	8.28e-28	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000221623
AA Change: D168G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 99.8%
3x: 99.4%
10x: 97.1%
20x: 90.5%

Validation Efficiency

100% (78/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein of unknown function. It shows high transcription levels in 2 retinoblastoma cell lines and in tissues of neuroectodermal origin. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb9	A	T	5: 124,227,878 (GRCm39)	V121E	possibly damaging	Het
Acsbg3	A	T	17: 57,183,373 (GRCm39)	D38V	probably benign	Het
Adamts20	T	A	15: 94,277,628 (GRCm39)	Y278F	probably damaging	Het
Adcy7	A	T	8: 89,053,020 (GRCm39)	D972V	probably benign	Het
Adgrf3	C	A	5: 30,403,360 (GRCm39)		probably null	Het
Ahdc1	G	T	4: 132,791,206 (GRCm39)	G816C	probably benign	Het
Aifm3	A	G	16: 17,319,994 (GRCm39)	K283E	probably benign	Het
Akap6	T	C	12: 52,984,016 (GRCm39)		probably null	Het
Ank1	T	C	8: 23,589,678 (GRCm39)	L593P	probably damaging	Het
Apol11b	T	A	15: 77,519,697 (GRCm39)	T128S	probably benign	Het
C1qtnf7	C	A	5: 43,773,427 (GRCm39)	T235K	probably damaging	Het
Camk2a	A	T	18: 61,111,029 (GRCm39)	I73F	probably damaging	Het
Ccdc121rt3	C	T	5: 112,502,874 (GRCm39)	V277M	possibly damaging	Het
Cd109	G	T	9: 78,612,344 (GRCm39)	V1244F	possibly damaging	Het
Cep164	A	G	9: 45,680,761 (GRCm39)	L1240S	possibly damaging	Het
Cnga1	T	A	5: 72,761,918 (GRCm39)	D532V	probably damaging	Het
Cyp4a14	A	T	4: 115,353,297 (GRCm39)	L5*	probably null	Het
Cyp4a30b	A	T	4: 115,316,588 (GRCm39)	K405*	probably null	Het
Dchs1	T	C	7: 105,403,302 (GRCm39)	D3080G	probably benign	Het
Dhx57	T	G	17: 80,553,235 (GRCm39)	K1231Q	probably damaging	Het
Dnah14	A	G	1: 181,597,670 (GRCm39)	N3640D	probably benign	Het
Dock4	T	A	12: 40,805,833 (GRCm39)	L935Q	probably damaging	Het
Dus2	A	T	8: 106,772,698 (GRCm39)	R269S	probably benign	Het
E230025N22Rik	G	A	18: 36,822,161 (GRCm39)	R201C	possibly damaging	Het
Erbb3	G	A	10: 128,419,054 (GRCm39)	T269M	probably damaging	Het
Fbxo43	T	C	15: 36,162,239 (GRCm39)	R323G	probably damaging	Het
Fktn	A	G	4: 53,735,061 (GRCm39)	H233R	probably benign	Het
Ftsj3	A	T	11: 106,143,077 (GRCm39)	D412E	probably damaging	Het
Fzd7	A	T	1: 59,523,703 (GRCm39)	M529L	probably benign	Het
Fzr1	T	A	10: 81,206,660 (GRCm39)		probably null	Het
Ganc	T	G	2: 120,261,086 (GRCm39)	V257G	possibly damaging	Het
Garin1a	T	A	6: 29,290,423 (GRCm39)	L267*	probably null	Het
Gm4131	T	C	14: 62,702,207 (GRCm39)	K254E	probably damaging	Het
Gm7347	G	T	5: 26,262,247 (GRCm39)	Y91*	probably null	Het
Gm9857	G	A	3: 108,847,481 (GRCm39)		probably benign	Het
Grpel1	T	C	5: 36,622,592 (GRCm39)	S19P	probably benign	Het
Gtf3c4	T	C	2: 28,723,723 (GRCm39)	K670E	possibly damaging	Het
H2bc7	G	A	13: 23,758,277 (GRCm39)		probably benign	Het
Hmcn1	G	T	1: 150,579,924 (GRCm39)	Q1938K	possibly damaging	Het
Hnrnpk	T	C	13: 58,546,971 (GRCm39)	D71G	probably damaging	Het
Hspa4l	G	A	3: 40,722,411 (GRCm39)	R311H	probably damaging	Het
Igkv3-5	T	A	6: 70,640,688 (GRCm39)	F56L	probably benign	Het
Igkv6-20	T	A	6: 70,312,898 (GRCm39)	T92S	possibly damaging	Het
Krt8	C	T	15: 101,909,029 (GRCm39)	V200I	possibly damaging	Het
Lamb2	A	T	9: 108,357,587 (GRCm39)	T66S	possibly damaging	Het
Lamp3	A	G	16: 19,519,778 (GRCm39)	L135S	probably benign	Het
Lrguk	A	G	6: 34,106,078 (GRCm39)	Y701C	probably damaging	Het
Mcc	G	T	18: 44,582,388 (GRCm39)	L588M	probably damaging	Het
Mcidas	T	A	13: 113,135,120 (GRCm39)	L234Q	probably damaging	Het
Mtmr14	T	A	6: 113,257,575 (GRCm39)	L208Q	probably damaging	Het
Myof	A	G	19: 37,893,747 (GRCm39)	F1139L	possibly damaging	Het
Nlrp14	C	A	7: 106,781,703 (GRCm39)	T300K	probably benign	Het
Or2d36	A	T	7: 106,746,535 (GRCm39)	E4V	possibly damaging	Het
Or2m13	T	A	16: 19,226,694 (GRCm39)	H24L	probably benign	Het
Or5b118	A	G	19: 13,448,870 (GRCm39)	I179V	probably benign	Het
Or8b41	A	T	9: 38,055,097 (GRCm39)	Y217F	probably damaging	Het
Orc2	A	G	1: 58,511,547 (GRCm39)	I354T	probably damaging	Het
Pard3b	G	T	1: 62,115,568 (GRCm39)	S140I	probably damaging	Het
Pcgf5	A	G	19: 36,412,003 (GRCm39)	D49G	probably benign	Het
Pcsk6	T	C	7: 65,609,041 (GRCm39)	F388S	probably damaging	Het
Prokr2	A	C	2: 132,223,362 (GRCm39)	I60S	probably damaging	Het
Rab33b	A	G	3: 51,391,900 (GRCm39)	T50A	possibly damaging	Het
Rbms3	T	C	9: 116,548,457 (GRCm39)	D61G	probably damaging	Het
Rhcg	T	A	7: 79,250,262 (GRCm39)	K274*	probably null	Het
Rnf112	C	T	11: 61,341,848 (GRCm39)	V319M	possibly damaging	Het
Rnf44	A	T	13: 54,830,613 (GRCm39)	S265T	possibly damaging	Het
Sf3a3	A	G	4: 124,615,851 (GRCm39)	D168G	probably damaging	Het
Sik2	A	G	9: 50,806,642 (GRCm39)		probably null	Het
Slco1a5	T	A	6: 142,198,839 (GRCm39)	L275F	probably benign	Het
Smtnl1	T	C	2: 84,645,722 (GRCm39)	H383R	probably damaging	Het
Spns3	T	G	11: 72,429,904 (GRCm39)	T175P	probably damaging	Het
Togaram1	A	G	12: 65,042,312 (GRCm39)	T1174A	probably benign	Het
Tradd	C	T	8: 105,987,277 (GRCm39)	E10K	possibly damaging	Het
Ttc7b	A	T	12: 100,339,819 (GRCm39)	Y579N	probably damaging	Het
Uncx	G	A	5: 139,533,344 (GRCm39)	G470R	probably damaging	Het
Vav3	T	A	3: 109,408,777 (GRCm39)	M177K	probably damaging	Het
Wfs1	A	T	5: 37,125,094 (GRCm39)	I599N	probably damaging	Het
Zfp454	G	A	11: 50,764,449 (GRCm39)	H217Y	probably damaging	Het

Other mutations in Ddx1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00725:Ddx1	APN	12	13,295,691 (GRCm39)	missense	probably damaging	1.00
IGL00725:Ddx1	APN	12	13,277,460 (GRCm39)	splice site	probably benign
IGL00958:Ddx1	APN	12	13,290,849 (GRCm39)	splice site	probably null
IGL01786:Ddx1	APN	12	13,279,137 (GRCm39)	missense	probably benign
IGL02832:Ddx1	APN	12	13,277,318 (GRCm39)	nonsense	probably null
IGL02983:Ddx1	APN	12	13,273,863 (GRCm39)	missense	probably damaging	1.00
R0201:Ddx1	UTSW	12	13,273,809 (GRCm39)	missense	probably damaging	1.00
R0931:Ddx1	UTSW	12	13,287,818 (GRCm39)	splice site	probably benign
R1434:Ddx1	UTSW	12	13,287,232 (GRCm39)	missense	probably benign	0.01
R1558:Ddx1	UTSW	12	13,289,542 (GRCm39)	missense	probably damaging	1.00
R1673:Ddx1	UTSW	12	13,294,967 (GRCm39)	critical splice donor site	probably null
R1854:Ddx1	UTSW	12	13,279,332 (GRCm39)	missense	probably benign	0.19
R2910:Ddx1	UTSW	12	13,281,441 (GRCm39)	splice site	probably null
R2911:Ddx1	UTSW	12	13,281,441 (GRCm39)	splice site	probably null
R4181:Ddx1	UTSW	12	13,281,504 (GRCm39)	nonsense	probably null
R4182:Ddx1	UTSW	12	13,281,504 (GRCm39)	nonsense	probably null
R4183:Ddx1	UTSW	12	13,281,504 (GRCm39)	nonsense	probably null
R4231:Ddx1	UTSW	12	13,273,858 (GRCm39)	missense	possibly damaging	0.74
R4234:Ddx1	UTSW	12	13,273,858 (GRCm39)	missense	possibly damaging	0.74
R4235:Ddx1	UTSW	12	13,273,858 (GRCm39)	missense	possibly damaging	0.74
R4243:Ddx1	UTSW	12	13,290,910 (GRCm39)	nonsense	probably null
R4717:Ddx1	UTSW	12	13,290,888 (GRCm39)	missense	probably damaging	1.00
R4821:Ddx1	UTSW	12	13,289,148 (GRCm39)	missense	probably damaging	1.00
R5032:Ddx1	UTSW	12	13,273,993 (GRCm39)	missense	probably damaging	1.00
R5082:Ddx1	UTSW	12	13,270,436 (GRCm39)	nonsense	probably null
R5528:Ddx1	UTSW	12	13,279,295 (GRCm39)	missense	probably damaging	1.00
R6398:Ddx1	UTSW	12	13,295,721 (GRCm39)	missense	probably damaging	1.00
R6891:Ddx1	UTSW	12	13,286,096 (GRCm39)	missense	probably benign	0.25
R7085:Ddx1	UTSW	12	13,279,356 (GRCm39)	missense	probably damaging	1.00
R7125:Ddx1	UTSW	12	13,293,864 (GRCm39)	missense	probably benign	0.18
R7307:Ddx1	UTSW	12	13,273,960 (GRCm39)	missense	probably damaging	1.00
R7388:Ddx1	UTSW	12	13,275,456 (GRCm39)	missense	probably null	1.00
R7393:Ddx1	UTSW	12	13,280,354 (GRCm39)	missense	probably benign	0.03
R7460:Ddx1	UTSW	12	13,281,440 (GRCm39)	splice site	probably null
R8310:Ddx1	UTSW	12	13,274,280 (GRCm39)	intron	probably benign
R8479:Ddx1	UTSW	12	13,270,749 (GRCm39)	missense	probably damaging	0.97
R8712:Ddx1	UTSW	12	13,293,859 (GRCm39)	critical splice donor site	probably benign
R8790:Ddx1	UTSW	12	13,273,993 (GRCm39)	missense	probably damaging	1.00
R8826:Ddx1	UTSW	12	13,277,332 (GRCm39)	missense	probably damaging	1.00
R9120:Ddx1	UTSW	12	13,275,458 (GRCm39)	missense	possibly damaging	0.89
R9214:Ddx1	UTSW	12	13,286,119 (GRCm39)	missense	probably benign
R9400:Ddx1	UTSW	12	13,273,703 (GRCm39)	missense	probably damaging	1.00
X0011:Ddx1	UTSW	12	13,279,416 (GRCm39)	missense	probably damaging	1.00
X0028:Ddx1	UTSW	12	13,293,867 (GRCm39)	missense	probably benign	0.00
Z1177:Ddx1	UTSW	12	13,279,260 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- AATTATCTGGGGCCTTGGAAAG -3'
(R):5'- TGAAGTCACACGGTAACTAGG -3'

Sequencing Primer
(F):5'- CTGGAATAGTCGAACCTCTGACTG -3'
(R):5'- CACACGGTAACTAGGTTGGCTCTAG -3'

Posted On

2017-06-26