Mutagenetix > Incidental Mutation

Incidental Mutation 'R5979:Lgi3'

481335

Institutional Source

Beutler Lab

Gene Symbol

Lgi3

Ensembl Gene

ENSMUSG00000033595

Gene Name

leucine-rich repeat LGI family, member 3

Synonyms

MMRRC Submission

044161-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R5979 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

70768125-70775764 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 70773900 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 358 (R358H)

Ref Sequence

ENSEMBL: ENSMUSP00000046705 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047331] [ENSMUST00000226548]

AlphaFold

Q8K406

Predicted Effect

probably damaging
Transcript: ENSMUST00000047331
AA Change: R358H

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000046705
Gene: ENSMUSG00000033595
AA Change: R358H

Domain	Start	End	E-Value	Type
signal peptide	1	30	N/A	INTRINSIC
low complexity region	31	47	N/A	INTRINSIC
LRR	87	110	2.63e0	SMART
LRR	111	134	1.07e0	SMART
LRR_TYP	135	158	2.84e-5	SMART
LRRCT	170	219	2.76e-4	SMART
Pfam:EPTP	222	263	7.6e-13	PFAM
Pfam:EPTP	268	309	1.3e-12	PFAM
Pfam:EPTP	314	360	1.1e-14	PFAM
Pfam:EPTP	363	405	2.4e-9	PFAM
Pfam:EPTP	410	452	1.2e-11	PFAM
Pfam:EPTP	455	496	2.2e-12	PFAM
Pfam:EPTP	501	541	2.4e-7	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226376

Predicted Effect

probably benign
Transcript: ENSMUST00000226548

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.4%
20x: 95.4%

Validation Efficiency

100% (87/87)

Allele List at MGI

All alleles(2) : Targeted(2)

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acss2	A	G	2: 155,364,029 (GRCm39)	I103V	possibly damaging	Het
Adam3	T	C	8: 25,167,383 (GRCm39)	N36S	probably benign	Het
Adamts3	A	G	5: 90,009,528 (GRCm39)	V45A	probably damaging	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Agtpbp1	A	T	13: 59,681,860 (GRCm39)	L69*	probably null	Het
Alkbh5	T	A	11: 60,429,517 (GRCm39)	I90N	probably damaging	Het
Alx1	T	C	10: 102,858,120 (GRCm39)	Y193C	probably damaging	Het
Ankrd11	T	G	8: 123,619,139 (GRCm39)	D1571A	probably damaging	Het
Brd4	T	C	17: 32,417,700 (GRCm39)	D124G	probably benign	Het
C2cd2	G	A	16: 97,676,418 (GRCm39)	T443I	probably benign	Het
Casp8	A	T	1: 58,868,071 (GRCm39)	M171L	probably benign	Het
Cd200r4	G	A	16: 44,653,295 (GRCm39)	V22I	probably benign	Het
Cdcp2	A	G	4: 106,962,478 (GRCm39)	Y217C	probably damaging	Het
Cfh	C	A	1: 140,046,409 (GRCm39)	V556F	possibly damaging	Het
Chka	T	G	19: 3,934,513 (GRCm39)	I182M	probably damaging	Het
Cope	T	C	8: 70,755,193 (GRCm39)		probably null	Het
Coq10b	T	C	1: 55,092,077 (GRCm39)	V15A	probably benign	Het
Cpne9	T	A	6: 113,270,710 (GRCm39)	S309T	probably benign	Het
Daam2	T	A	17: 49,766,232 (GRCm39)	H992L	possibly damaging	Het
Dctn3	T	C	4: 41,715,393 (GRCm39)		probably null	Het
Dhx35	G	T	2: 158,684,789 (GRCm39)	R536L	probably benign	Het
Dnah8	G	T	17: 31,034,638 (GRCm39)	E4186*	probably null	Het
Dnah9	A	G	11: 65,725,307 (GRCm39)	L4282P	probably damaging	Het
Dpp10	A	G	1: 123,312,012 (GRCm39)		probably null	Het
Dst	T	A	1: 34,199,453 (GRCm39)		probably benign	Het
Ehbp1	C	A	11: 22,101,887 (GRCm39)	V214L	probably benign	Het
Fam131b	T	C	6: 42,298,905 (GRCm39)	D25G	probably damaging	Het
Fbxl13	T	A	5: 21,787,089 (GRCm39)	I283F	probably damaging	Het
Gabrr3	T	G	16: 59,254,931 (GRCm39)	N205K	possibly damaging	Het
Got1l1	C	T	8: 27,687,951 (GRCm39)		probably null	Het
Gprin1	G	A	13: 54,887,791 (GRCm39)	A161V	probably benign	Het
Hepacam2	A	T	6: 3,476,149 (GRCm39)	F183I	probably damaging	Het
Hmx2	A	G	7: 131,156,279 (GRCm39)	T82A	probably benign	Het
Igsf10	C	T	3: 59,243,894 (GRCm39)	E147K	probably damaging	Het
Kndc1	G	A	7: 139,519,740 (GRCm39)	A1700T	probably benign	Het
Knl1	T	C	2: 118,899,841 (GRCm39)	V514A	possibly damaging	Het
Lama2	T	C	10: 27,111,728 (GRCm39)	D764G	probably damaging	Het
Limd1	G	T	9: 123,308,479 (GRCm39)	Q59H	possibly damaging	Het
Lrrk2	A	G	15: 91,657,148 (GRCm39)	Y1814C	possibly damaging	Het
Lysmd3	G	A	13: 81,813,393 (GRCm39)		probably null	Het
Mroh7	T	C	4: 106,578,123 (GRCm39)	N185S	probably benign	Het
Muc2	G	A	7: 141,305,143 (GRCm39)	G149D	probably damaging	Het
Muc2	A	G	7: 141,283,493 (GRCm39)		probably null	Het
Nlrp3	T	C	11: 59,439,797 (GRCm39)	F458S	probably benign	Het
Nop58	A	T	1: 59,741,990 (GRCm39)	D173V	probably damaging	Het
Nrxn1	C	T	17: 91,395,631 (GRCm39)	R175H	possibly damaging	Het
Nxpe4	A	G	9: 48,307,862 (GRCm39)	N322S	probably benign	Het
Ocstamp	A	G	2: 165,239,467 (GRCm39)	S240P	probably damaging	Het
Or10a5	G	A	7: 106,635,543 (GRCm39)	M60I	probably damaging	Het
Or2j3	T	C	17: 38,616,083 (GRCm39)	K90E	probably benign	Het
Or8b36	ATTGCTGTTT	ATTGCTGTTTGCTGTTT	9: 37,937,836 (GRCm39)		probably null	Het
Or9e1	A	G	11: 58,732,666 (GRCm39)	H242R	probably damaging	Het
Ovch2	G	A	7: 107,393,595 (GRCm39)	T177I	possibly damaging	Het
Parn	A	C	16: 13,424,035 (GRCm39)	L454R	probably damaging	Het
Pcdhb12	T	A	18: 37,571,044 (GRCm39)	L730Q	possibly damaging	Het
Phf3	G	T	1: 30,844,827 (GRCm39)	F1377L	probably damaging	Het
Pign	G	T	1: 105,516,999 (GRCm39)	S542R	probably benign	Het
Prex2	G	T	1: 11,202,596 (GRCm39)	V502F	probably damaging	Het
Psmd1	A	T	1: 86,017,775 (GRCm39)	I529F	possibly damaging	Het
Ptafr	A	G	4: 132,306,616 (GRCm39)	E2G	probably benign	Het
R3hdm1	A	G	1: 128,138,960 (GRCm39)	N380S	probably benign	Het
Rbm12	A	C	2: 155,939,679 (GRCm39)		probably benign	Het
Rgl1	A	G	1: 152,433,244 (GRCm39)	Y174H	probably damaging	Het
Rps6kc1	A	G	1: 190,532,632 (GRCm39)	S457P	probably damaging	Het
Sall4	A	T	2: 168,592,263 (GRCm39)	S964T	probably benign	Het
Sart1	T	A	19: 5,431,251 (GRCm39)	I681F	probably damaging	Het
Serinc5	T	C	13: 92,797,644 (GRCm39)	L49P	probably benign	Het
Serpinb9e	T	C	13: 33,439,036 (GRCm39)	V154A	probably benign	Het
Skic2	A	T	17: 35,060,439 (GRCm39)	N851K	probably benign	Het
Smox	G	A	2: 131,358,334 (GRCm39)	V136I	probably damaging	Het
Sspo	C	T	6: 48,440,627 (GRCm39)	T1747I	probably benign	Het
Swt1	A	T	1: 151,283,339 (GRCm39)	D339E	possibly damaging	Het
Synpo2	A	G	3: 122,911,060 (GRCm39)	L195P	probably damaging	Het
Syt7	G	T	19: 10,420,843 (GRCm39)	G414W	probably damaging	Het
Tmem186	G	A	16: 8,454,024 (GRCm39)	T79I	probably damaging	Het
Tmem39a	A	T	16: 38,396,106 (GRCm39)	N113I	probably damaging	Het
Trim14	C	T	4: 46,507,239 (GRCm39)	V326M	probably damaging	Het
Trim58	A	G	11: 58,536,909 (GRCm39)	E234G	probably damaging	Het
Ttr	T	C	18: 20,803,059 (GRCm39)	L75P	probably damaging	Het
Ubr1	C	T	2: 120,776,863 (GRCm39)	V293I	probably benign	Het
Vmn1r91	T	A	7: 19,835,990 (GRCm39)	V303E	probably benign	Het
Vmn2r30	A	C	7: 7,315,334 (GRCm39)	I833S	probably damaging	Het
Zfp131	G	T	13: 120,237,982 (GRCm39)	N125K	probably benign	Het
Zfp169	A	T	13: 48,644,516 (GRCm39)		probably benign	Het
Zfp213	C	A	17: 23,776,885 (GRCm39)	E386*	probably null	Het

Other mutations in Lgi3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01639:Lgi3	APN	14	70,770,825 (GRCm39)	missense	probably benign	0.05
IGL02203:Lgi3	APN	14	70,771,958 (GRCm39)	missense	possibly damaging	0.68
P0007:Lgi3	UTSW	14	70,774,152 (GRCm39)	missense	probably damaging	1.00
R0114:Lgi3	UTSW	14	70,768,469 (GRCm39)	start gained	probably benign
R0225:Lgi3	UTSW	14	70,770,261 (GRCm39)	missense	probably benign
R0242:Lgi3	UTSW	14	70,772,255 (GRCm39)	nonsense	probably null
R0242:Lgi3	UTSW	14	70,772,255 (GRCm39)	nonsense	probably null
R0244:Lgi3	UTSW	14	70,772,138 (GRCm39)	missense	probably benign	0.30
R0396:Lgi3	UTSW	14	70,772,280 (GRCm39)	missense	probably damaging	1.00
R0479:Lgi3	UTSW	14	70,771,992 (GRCm39)	unclassified	probably benign
R1652:Lgi3	UTSW	14	70,768,656 (GRCm39)	missense	probably damaging	0.99
R1840:Lgi3	UTSW	14	70,772,216 (GRCm39)	splice site	probably null
R1930:Lgi3	UTSW	14	70,773,708 (GRCm39)	missense	probably damaging	0.98
R1931:Lgi3	UTSW	14	70,773,708 (GRCm39)	missense	probably damaging	0.98
R2474:Lgi3	UTSW	14	70,770,689 (GRCm39)	critical splice donor site	probably null
R4672:Lgi3	UTSW	14	70,771,897 (GRCm39)	missense	possibly damaging	0.62
R6385:Lgi3	UTSW	14	70,768,610 (GRCm39)	missense	possibly damaging	0.66
R7146:Lgi3	UTSW	14	70,770,832 (GRCm39)	missense	probably damaging	1.00
R7314:Lgi3	UTSW	14	70,769,552 (GRCm39)	missense	probably damaging	1.00
R7712:Lgi3	UTSW	14	70,768,551 (GRCm39)	missense	unknown
R8124:Lgi3	UTSW	14	70,772,178 (GRCm39)	missense	probably damaging	1.00
R8417:Lgi3	UTSW	14	70,772,246 (GRCm39)	missense	probably benign	0.00
R8826:Lgi3	UTSW	14	70,768,712 (GRCm39)	critical splice donor site	probably null
R8881:Lgi3	UTSW	14	70,770,282 (GRCm39)	missense	probably damaging	1.00
R9186:Lgi3	UTSW	14	70,772,193 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGATGGCCAGCTCTATGTC -3'
(R):5'- TCAGGTACCTGAGTCACCTC -3'

Sequencing Primer
(F):5'- CTATGTCGTTGTGGCCCAGC -3'
(R):5'- GAGTCACCTCTCCCTGAGC -3'

Posted On

2017-06-26