Incidental Mutation 'R5987:Robo4'
ID 481740
Institutional Source Beutler Lab
Gene Symbol Robo4
Ensembl Gene ENSMUSG00000032125
Gene Name roundabout guidance receptor 4
Synonyms Magic roundabout, 1200012D01Rik
MMRRC Submission 044167-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.217) question?
Stock # R5987 (G1)
Quality Score 225.009
Status Not validated
Chromosome 9
Chromosomal Location 37313198-37325319 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 37322696 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Valine at position 850 (I850V)
Ref Sequence ENSEMBL: ENSMUSP00000150722 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034643] [ENSMUST00000102895] [ENSMUST00000115038] [ENSMUST00000115046] [ENSMUST00000115048] [ENSMUST00000156972] [ENSMUST00000170512] [ENSMUST00000214185]
AlphaFold Q8C310
Predicted Effect probably benign
Transcript: ENSMUST00000034643
SMART Domains Protein: ENSMUSP00000034643
Gene: ENSMUSG00000032128

DomainStartEndE-ValueType
IGc2 54 128 9.7e-11 SMART
IGc2 156 221 1.44e-4 SMART
IGc2 248 311 1.89e-13 SMART
IGc2 337 409 9.84e-12 SMART
IGc2 441 506 2.09e-15 SMART
FN3 534 616 4.24e-14 SMART
FN3 648 731 3.06e0 SMART
FN3 747 832 1.97e-9 SMART
low complexity region 870 890 N/A INTRINSIC
low complexity region 1055 1082 N/A INTRINSIC
low complexity region 1131 1149 N/A INTRINSIC
low complexity region 1155 1169 N/A INTRINSIC
low complexity region 1193 1206 N/A INTRINSIC
low complexity region 1245 1256 N/A INTRINSIC
low complexity region 1268 1281 N/A INTRINSIC
low complexity region 1336 1376 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000102895
AA Change: I843V

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000099959
Gene: ENSMUSG00000032125
AA Change: I843V

DomainStartEndE-ValueType
signal peptide 1 37 N/A INTRINSIC
IG 48 144 2.51e0 SMART
IGc2 160 225 6.86e-11 SMART
FN3 263 343 2.05e0 SMART
FN3 358 440 1.27e-3 SMART
low complexity region 488 494 N/A INTRINSIC
low complexity region 544 562 N/A INTRINSIC
low complexity region 720 733 N/A INTRINSIC
low complexity region 748 762 N/A INTRINSIC
low complexity region 775 799 N/A INTRINSIC
low complexity region 855 866 N/A INTRINSIC
low complexity region 871 880 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000115038
SMART Domains Protein: ENSMUSP00000110690
Gene: ENSMUSG00000032128

DomainStartEndE-ValueType
low complexity region 34 47 N/A INTRINSIC
IGc2 76 150 9.7e-11 SMART
IGc2 178 243 1.44e-4 SMART
IGc2 270 333 1.89e-13 SMART
IGc2 359 431 9.84e-12 SMART
IGc2 463 528 2.09e-15 SMART
FN3 556 638 4.24e-14 SMART
FN3 670 753 3.06e0 SMART
FN3 769 854 1.97e-9 SMART
low complexity region 892 912 N/A INTRINSIC
low complexity region 1077 1104 N/A INTRINSIC
low complexity region 1153 1171 N/A INTRINSIC
low complexity region 1177 1191 N/A INTRINSIC
low complexity region 1215 1228 N/A INTRINSIC
low complexity region 1267 1278 N/A INTRINSIC
low complexity region 1290 1303 N/A INTRINSIC
low complexity region 1358 1398 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000115046
AA Change: I902V

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000110698
Gene: ENSMUSG00000032125
AA Change: I902V

DomainStartEndE-ValueType
signal peptide 1 37 N/A INTRINSIC
IG 48 144 2.51e0 SMART
IGc2 160 225 6.86e-11 SMART
FN3 263 343 2.05e0 SMART
FN3 358 440 1.27e-3 SMART
low complexity region 484 500 N/A INTRINSIC
low complexity region 540 546 N/A INTRINSIC
low complexity region 596 614 N/A INTRINSIC
low complexity region 747 756 N/A INTRINSIC
low complexity region 779 792 N/A INTRINSIC
low complexity region 807 821 N/A INTRINSIC
low complexity region 834 858 N/A INTRINSIC
low complexity region 914 925 N/A INTRINSIC
low complexity region 930 939 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000115048
AA Change: I739V

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000110700
Gene: ENSMUSG00000032125
AA Change: I739V

DomainStartEndE-ValueType
signal peptide 1 37 N/A INTRINSIC
IG 48 144 2.51e0 SMART
IGc2 160 225 6.86e-11 SMART
FN3 263 343 2.05e0 SMART
FN3 358 440 1.27e-3 SMART
low complexity region 488 494 N/A INTRINSIC
low complexity region 544 562 N/A INTRINSIC
low complexity region 695 704 N/A INTRINSIC
low complexity region 727 740 N/A INTRINSIC
low complexity region 755 769 N/A INTRINSIC
low complexity region 782 806 N/A INTRINSIC
low complexity region 862 873 N/A INTRINSIC
low complexity region 878 887 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000156972
Predicted Effect noncoding transcript
Transcript: ENSMUST00000167089
Predicted Effect noncoding transcript
Transcript: ENSMUST00000171467
Predicted Effect probably benign
Transcript: ENSMUST00000170512
Predicted Effect probably damaging
Transcript: ENSMUST00000214185
AA Change: I850V

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000215777
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.4%
  • 10x: 97.2%
  • 20x: 91.2%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a reporter/null allele display enhanced VEGF-induced endothelial migration, tube formation and vascular permeability, and show increased pathologic angiogenesis and vascular leak in models of oxygen-induced retinopathy and choroidal neovascularization. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 93 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 A C 1: 71,297,257 (GRCm39) L2411R probably damaging Het
Als2 A G 1: 59,245,746 (GRCm39) W577R probably damaging Het
Aox1 C A 1: 58,346,518 (GRCm39) R551S probably benign Het
Areg A T 5: 91,294,577 (GRCm39) H245L possibly damaging Het
Arhgap35 T C 7: 16,297,392 (GRCm39) T558A possibly damaging Het
Arhgef28 A T 13: 98,073,368 (GRCm39) C1322* probably null Het
Arhgef38 T C 3: 132,912,719 (GRCm39) R107G possibly damaging Het
Atf7ip T A 6: 136,548,500 (GRCm39) F695L probably damaging Het
AW209491 C T 13: 14,812,365 (GRCm39) A406V probably benign Het
Bche T G 3: 73,556,011 (GRCm39) Q549P possibly damaging Het
Blnk A G 19: 40,917,733 (GRCm39) F417L possibly damaging Het
Bloc1s1 T G 10: 128,759,255 (GRCm39) K17T probably damaging Het
C330018D20Rik G T 18: 57,090,968 (GRCm39) T65K probably damaging Het
Ccdc168 A T 1: 44,096,417 (GRCm39) N1560K probably benign Het
Cers1 T A 8: 70,774,228 (GRCm39) S162T possibly damaging Het
Cgn T C 3: 94,686,832 (GRCm39) K157E probably benign Het
Cldn7 G A 11: 69,858,494 (GRCm39) R196Q probably benign Het
Clrn2 C A 5: 45,611,369 (GRCm39) Q73K probably benign Het
Cmss1 A G 16: 57,122,608 (GRCm39) V262A probably benign Het
Cpb2 T A 14: 75,498,128 (GRCm39) V97E probably damaging Het
Ctnnd2 G A 15: 30,683,387 (GRCm39) V463I probably benign Het
Cyp7a1 A T 4: 6,268,476 (GRCm39) S416R probably benign Het
Dip2b C T 15: 100,087,960 (GRCm39) R965C probably damaging Het
Dkk3 T C 7: 111,749,865 (GRCm39) T102A probably benign Het
Dmap1 C A 4: 117,538,039 (GRCm39) probably null Het
Dnah12 C A 14: 26,608,828 (GRCm39) D3872E possibly damaging Het
Dnah7b A G 1: 46,158,558 (GRCm39) probably null Het
Dnai1 C T 4: 41,632,391 (GRCm39) T575I probably benign Het
Dsg1a T A 18: 20,464,599 (GRCm39) Y365N probably damaging Het
Dusp11 T A 6: 85,936,215 (GRCm39) K18* probably null Het
E2f2 A T 4: 135,900,245 (GRCm39) T52S probably benign Het
Elavl4 A G 4: 110,147,841 (GRCm39) L13S probably benign Het
Epor T C 9: 21,873,572 (GRCm39) D59G possibly damaging Het
Eral1 A G 11: 77,971,059 (GRCm39) C43R possibly damaging Het
Fam135b A G 15: 71,362,697 (GRCm39) V228A probably benign Het
Gba1 T C 3: 89,113,129 (GRCm39) S187P probably damaging Het
Gcc2 G T 10: 58,091,669 (GRCm39) probably benign Het
Gdap2 C A 3: 100,109,572 (GRCm39) probably benign Het
Gm10271 A T 10: 116,808,497 (GRCm39) F6L probably damaging Het
Gm10801 C CGTG 2: 98,494,152 (GRCm39) probably null Het
Gpr160 T C 3: 30,950,612 (GRCm39) L228P probably benign Het
Gsdmc2 A C 15: 63,702,715 (GRCm39) V184G probably benign Het
Gtf2e2 A T 8: 34,266,080 (GRCm39) K252M probably damaging Het
Gtf2e2 G T 8: 34,266,081 (GRCm39) K252N probably benign Het
Gys1 T C 7: 45,087,529 (GRCm39) Y102H probably benign Het
H4c2 A G 13: 23,941,209 (GRCm39) D69G probably damaging Het
Ifit3b A C 19: 34,589,598 (GRCm39) D258A probably damaging Het
Itpr3 T A 17: 27,323,575 (GRCm39) M1200K probably damaging Het
Kcng4 A T 8: 120,353,098 (GRCm39) F271I probably damaging Het
Klhdc2 C T 12: 69,350,387 (GRCm39) S144L possibly damaging Het
Lhcgr A G 17: 89,063,006 (GRCm39) F222S probably damaging Het
Lrp5 C G 19: 3,678,299 (GRCm39) G519R probably damaging Het
Magel2 T C 7: 62,028,515 (GRCm39) V473A probably benign Het
Map1a T C 2: 121,134,776 (GRCm39) V1864A possibly damaging Het
Mast4 T A 13: 102,895,242 (GRCm39) Q760H probably damaging Het
Mertk A G 2: 128,613,294 (GRCm39) N437D probably benign Het
Mettl18 G A 1: 163,824,344 (GRCm39) V222I probably benign Het
Mical2 C T 7: 111,934,155 (GRCm39) T782M probably benign Het
Mocos T A 18: 24,819,750 (GRCm39) V664E probably damaging Het
Neb G T 2: 52,185,306 (GRCm39) N975K probably benign Het
Nectin3 A T 16: 46,284,508 (GRCm39) S59T probably benign Het
Nelfb A T 2: 25,093,900 (GRCm39) M11K probably damaging Het
Nrp1 A G 8: 129,202,650 (GRCm39) N545S probably damaging Het
Or10ak11 T C 4: 118,687,478 (GRCm39) D53G probably damaging Het
Or2g1 T A 17: 38,107,248 (GRCm39) N304K probably benign Het
Or51b4 T A 7: 103,530,907 (GRCm39) D181V probably damaging Het
Or5b117 A T 19: 13,431,324 (GRCm39) S186T possibly damaging Het
Or5p67 T A 7: 107,922,254 (GRCm39) T210S probably benign Het
Or6c70 A T 10: 129,710,390 (GRCm39) F79I probably damaging Het
Or8g53 T C 9: 39,683,836 (GRCm39) T87A probably benign Het
P3h1 A G 4: 119,103,862 (GRCm39) H587R probably damaging Het
Paqr4 A G 17: 23,958,832 (GRCm39) probably null Het
Pde12 A G 14: 26,390,253 (GRCm39) V152A probably benign Het
Ppip5k1 C A 2: 121,180,972 (GRCm39) E45* probably null Het
Ptch2 C T 4: 116,967,254 (GRCm39) A677V probably benign Het
Rgs12 A G 5: 35,177,689 (GRCm39) N93S probably damaging Het
Rif1 C G 2: 51,985,856 (GRCm39) L614V probably damaging Het
Rnf32 T C 5: 29,408,145 (GRCm39) S125P probably damaging Het
Scap T A 9: 110,210,219 (GRCm39) I876N probably damaging Het
Sin3a A G 9: 57,034,484 (GRCm39) D1219G possibly damaging Het
Skint5 T C 4: 113,743,005 (GRCm39) E354G unknown Het
Spart A G 3: 55,033,962 (GRCm39) D396G probably benign Het
Spindoc G A 19: 7,351,024 (GRCm39) S311L probably benign Het
Spta1 G T 1: 174,050,894 (GRCm39) R1791L probably damaging Het
Tbck T C 3: 132,507,278 (GRCm39) I750T possibly damaging Het
Tmem191 T C 16: 17,094,334 (GRCm39) probably null Het
Trgv1 A T 13: 19,524,474 (GRCm39) Y66F probably benign Het
Vmn2r125 A G 4: 156,702,292 (GRCm39) Y26C probably damaging Het
Zbtb17 T C 4: 141,192,128 (GRCm39) C358R possibly damaging Het
Zfp180 G A 7: 23,804,859 (GRCm39) G426E probably damaging Het
Zfp445 A G 9: 122,682,951 (GRCm39) V330A probably benign Het
Zfp595 A G 13: 67,465,688 (GRCm39) C192R probably damaging Het
Zkscan4 A G 13: 21,668,623 (GRCm39) H387R probably damaging Het
Other mutations in Robo4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00090:Robo4 APN 9 37,322,400 (GRCm39) missense probably damaging 1.00
IGL00392:Robo4 APN 9 37,319,525 (GRCm39) missense probably damaging 1.00
IGL00491:Robo4 APN 9 37,317,231 (GRCm39) missense possibly damaging 0.52
IGL00792:Robo4 APN 9 37,319,507 (GRCm39) missense probably damaging 1.00
IGL01062:Robo4 APN 9 37,317,296 (GRCm39) missense probably benign 0.08
IGL01287:Robo4 APN 9 37,324,336 (GRCm39) missense possibly damaging 0.96
IGL02289:Robo4 APN 9 37,319,496 (GRCm39) missense probably damaging 1.00
IGL02486:Robo4 APN 9 37,319,670 (GRCm39) missense probably damaging 1.00
IGL02851:Robo4 APN 9 37,324,678 (GRCm39) missense probably damaging 0.96
IGL02898:Robo4 APN 9 37,319,472 (GRCm39) missense probably damaging 0.99
IGL02965:Robo4 APN 9 37,321,765 (GRCm39) missense possibly damaging 0.82
IGL03071:Robo4 APN 9 37,315,580 (GRCm39) splice site probably benign
IGL03102:Robo4 APN 9 37,315,481 (GRCm39) missense probably damaging 1.00
H8562:Robo4 UTSW 9 37,317,106 (GRCm39) intron probably benign
PIT4305001:Robo4 UTSW 9 37,322,687 (GRCm39) missense probably damaging 1.00
R0056:Robo4 UTSW 9 37,315,773 (GRCm39) missense probably benign 0.03
R0068:Robo4 UTSW 9 37,315,773 (GRCm39) missense probably benign 0.03
R0233:Robo4 UTSW 9 37,313,977 (GRCm39) missense probably damaging 1.00
R0233:Robo4 UTSW 9 37,313,977 (GRCm39) missense probably damaging 1.00
R0416:Robo4 UTSW 9 37,316,062 (GRCm39) splice site probably benign
R1005:Robo4 UTSW 9 37,319,547 (GRCm39) missense probably damaging 1.00
R1174:Robo4 UTSW 9 37,324,348 (GRCm39) missense probably damaging 1.00
R1183:Robo4 UTSW 9 37,319,348 (GRCm39) missense probably damaging 1.00
R1254:Robo4 UTSW 9 37,322,136 (GRCm39) critical splice donor site probably null
R1398:Robo4 UTSW 9 37,319,372 (GRCm39) critical splice donor site probably null
R1505:Robo4 UTSW 9 37,314,523 (GRCm39) missense probably damaging 0.98
R1701:Robo4 UTSW 9 37,314,739 (GRCm39) missense probably benign 0.44
R1834:Robo4 UTSW 9 37,324,355 (GRCm39) missense probably benign 0.09
R1899:Robo4 UTSW 9 37,315,366 (GRCm39) splice site probably benign
R2203:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R2204:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R2351:Robo4 UTSW 9 37,322,956 (GRCm39) missense probably benign 0.01
R2448:Robo4 UTSW 9 37,313,958 (GRCm39) missense possibly damaging 0.96
R2847:Robo4 UTSW 9 37,315,772 (GRCm39) nonsense probably null
R2851:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R2852:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R2877:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R3123:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R3124:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R3125:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R3805:Robo4 UTSW 9 37,315,734 (GRCm39) missense possibly damaging 0.73
R3806:Robo4 UTSW 9 37,315,734 (GRCm39) missense possibly damaging 0.73
R3892:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R3905:Robo4 UTSW 9 37,314,801 (GRCm39) nonsense probably null
R3938:Robo4 UTSW 9 37,313,313 (GRCm39) start gained probably benign
R4261:Robo4 UTSW 9 37,316,877 (GRCm39) missense probably benign 0.04
R4434:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R4435:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R4561:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R4562:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R4568:Robo4 UTSW 9 37,316,118 (GRCm39) missense possibly damaging 0.59
R4695:Robo4 UTSW 9 37,314,495 (GRCm39) missense probably damaging 1.00
R4921:Robo4 UTSW 9 37,313,856 (GRCm39) missense probably benign
R5000:Robo4 UTSW 9 37,319,664 (GRCm39) missense probably benign 0.02
R5056:Robo4 UTSW 9 37,316,102 (GRCm39) missense probably benign 0.00
R5125:Robo4 UTSW 9 37,319,256 (GRCm39) missense probably damaging 1.00
R5178:Robo4 UTSW 9 37,319,256 (GRCm39) missense probably damaging 1.00
R5278:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5279:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5285:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5347:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5348:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5361:Robo4 UTSW 9 37,324,674 (GRCm39) missense probably benign 0.01
R5403:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5404:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5488:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5489:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5490:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5494:Robo4 UTSW 9 37,322,786 (GRCm39) frame shift probably null
R5629:Robo4 UTSW 9 37,319,658 (GRCm39) missense probably damaging 1.00
R5736:Robo4 UTSW 9 37,316,093 (GRCm39) missense possibly damaging 0.63
R5796:Robo4 UTSW 9 37,322,970 (GRCm39) missense probably benign 0.00
R6178:Robo4 UTSW 9 37,316,926 (GRCm39) nonsense probably null
R6189:Robo4 UTSW 9 37,314,829 (GRCm39) missense probably benign 0.35
R6365:Robo4 UTSW 9 37,322,008 (GRCm39) missense probably benign 0.34
R6528:Robo4 UTSW 9 37,315,664 (GRCm39) missense possibly damaging 0.92
R6887:Robo4 UTSW 9 37,313,363 (GRCm39) missense possibly damaging 0.82
R7196:Robo4 UTSW 9 37,314,001 (GRCm39) missense possibly damaging 0.92
R7408:Robo4 UTSW 9 37,322,277 (GRCm39) missense probably benign 0.09
R7419:Robo4 UTSW 9 37,314,105 (GRCm39) missense probably benign 0.18
R7486:Robo4 UTSW 9 37,316,870 (GRCm39) missense probably damaging 0.99
R7707:Robo4 UTSW 9 37,324,418 (GRCm39) missense probably damaging 1.00
R7839:Robo4 UTSW 9 37,322,055 (GRCm39) missense probably damaging 1.00
R8079:Robo4 UTSW 9 37,313,931 (GRCm39) missense possibly damaging 0.82
R8081:Robo4 UTSW 9 37,316,936 (GRCm39) missense probably damaging 0.99
R8280:Robo4 UTSW 9 37,315,372 (GRCm39) missense probably benign 0.00
R8526:Robo4 UTSW 9 37,314,801 (GRCm39) nonsense probably null
R8547:Robo4 UTSW 9 37,315,674 (GRCm39) missense possibly damaging 0.69
R8735:Robo4 UTSW 9 37,319,577 (GRCm39) missense possibly damaging 0.92
R8836:Robo4 UTSW 9 37,317,130 (GRCm39) missense unknown
R8889:Robo4 UTSW 9 37,314,601 (GRCm39) missense probably benign 0.00
R9018:Robo4 UTSW 9 37,315,520 (GRCm39) missense probably benign 0.00
R9182:Robo4 UTSW 9 37,313,206 (GRCm39) start gained probably benign
R9375:Robo4 UTSW 9 37,316,158 (GRCm39) missense probably damaging 1.00
R9621:Robo4 UTSW 9 37,317,509 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGGGAGAGCCGAAACACTAC -3'
(R):5'- CACGAGCAAAGTGAGTATCAGC -3'

Sequencing Primer
(F):5'- CACTACAGCTAAGCATGCTAGGG -3'
(R):5'- AAGAGCTAACCAGGCTGGCC -3'
Posted On 2017-06-26