Incidental Mutation 'R0515:Cd96'
ID 48198
Institutional Source Beutler Lab
Gene Symbol Cd96
Ensembl Gene ENSMUSG00000022657
Gene Name CD96 antigen
Synonyms 1700109I12Rik, Tactile
MMRRC Submission 038709-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0515 (G1)
Quality Score 225
Status Validated
Chromosome 16
Chromosomal Location 45856020-45940614 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to G at 45884268 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000023336 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023336]
AlphaFold Q3U0X8
Predicted Effect probably benign
Transcript: ENSMUST00000023336
SMART Domains Protein: ENSMUSP00000023336
Gene: ENSMUSG00000022657

DomainStartEndE-ValueType
IG 30 137 1.63e-3 SMART
IG 145 247 1.12e-1 SMART
Blast:IG_like 257 357 3e-14 BLAST
low complexity region 434 448 N/A INTRINSIC
transmembrane domain 535 557 N/A INTRINSIC
low complexity region 571 580 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.3%
  • 20x: 92.6%
Validation Efficiency 98% (40/41)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the immunoglobulin superfamily. It is a type I membrane protein. The protein may play a role in the adhesive interactions of activated T and NK cells during the late phase of the immune response. It may also function in antigen presentation. Alternative splicing generates multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jan 2016]
Allele List at MGI
Other mutations in this stock
Total: 35 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
App C T 16: 84,900,232 (GRCm39) probably benign Het
Arhgap11a G A 2: 113,667,816 (GRCm39) T395I possibly damaging Het
Arhgef38 T G 3: 132,855,301 (GRCm39) H262P probably damaging Het
Cfap57 A G 4: 118,477,599 (GRCm39) S2P probably damaging Het
Cltc A G 11: 86,599,865 (GRCm39) S948P probably benign Het
Cyp3a41a A T 5: 145,654,810 (GRCm39) H30Q probably damaging Het
Dcp2 C T 18: 44,532,798 (GRCm39) L105F probably benign Het
Dennd4c T C 4: 86,731,703 (GRCm39) V887A possibly damaging Het
Dnaaf9 A G 2: 130,582,408 (GRCm39) V515A probably damaging Het
Gm11360 T A 13: 28,140,143 (GRCm39) D2E probably damaging Het
Gpank1 G T 17: 35,342,475 (GRCm39) A149S probably damaging Het
Gtf2i C A 5: 134,271,773 (GRCm39) S792I probably damaging Het
Hvcn1 A G 5: 122,371,582 (GRCm39) N41D probably damaging Het
Klk1b5 A G 7: 43,867,957 (GRCm39) Y43C probably damaging Het
Lmtk2 A G 5: 144,111,809 (GRCm39) D843G possibly damaging Het
Lrriq1 A T 10: 102,904,829 (GRCm39) probably null Het
Mapk8ip1 A T 2: 92,217,701 (GRCm39) I198N possibly damaging Het
Mill1 T C 7: 17,998,798 (GRCm39) V336A probably benign Het
Mroh7 T A 4: 106,548,861 (GRCm39) M1001L probably benign Het
Nfe2 T A 15: 103,157,854 (GRCm39) T46S probably null Het
Or8b40 T C 9: 38,027,313 (GRCm39) S74P probably damaging Het
Or9q1 T C 19: 13,805,185 (GRCm39) S192G probably damaging Het
Parp4 T C 14: 56,851,124 (GRCm39) V709A probably damaging Het
Pkd1l3 C G 8: 110,350,281 (GRCm39) D375E possibly damaging Het
Prex2 A T 1: 11,270,098 (GRCm39) Q1261L probably damaging Het
Prl8a8 T A 13: 27,692,350 (GRCm39) I214L probably damaging Het
Rictor C T 15: 6,798,782 (GRCm39) T343M probably damaging Het
Sema6a G A 18: 47,423,112 (GRCm39) probably null Het
Siglecf T C 7: 43,005,055 (GRCm39) probably null Het
Slco1b2 T C 6: 141,615,136 (GRCm39) F347S possibly damaging Het
Sox13 A T 1: 133,311,457 (GRCm39) Y592N probably damaging Het
Synj1 C T 16: 90,790,910 (GRCm39) A84T possibly damaging Het
Tent5b A T 4: 133,213,450 (GRCm39) H107L possibly damaging Het
Trpv5 T A 6: 41,651,145 (GRCm39) probably benign Het
Tshz1 A G 18: 84,034,090 (GRCm39) V106A probably benign Het
Other mutations in Cd96
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00162:Cd96 APN 16 45,892,162 (GRCm39) missense possibly damaging 0.85
IGL00588:Cd96 APN 16 45,858,917 (GRCm39) missense probably benign 0.04
IGL00916:Cd96 APN 16 45,861,675 (GRCm39) missense probably benign 0.07
IGL01080:Cd96 APN 16 45,870,056 (GRCm39) missense possibly damaging 0.67
IGL01538:Cd96 APN 16 45,929,490 (GRCm39) missense possibly damaging 0.67
IGL02350:Cd96 APN 16 45,890,139 (GRCm39) splice site probably benign
IGL02357:Cd96 APN 16 45,890,139 (GRCm39) splice site probably benign
IGL02892:Cd96 APN 16 45,870,160 (GRCm39) critical splice acceptor site probably null
R0119:Cd96 UTSW 16 45,858,942 (GRCm39) splice site probably benign
R0242:Cd96 UTSW 16 45,892,129 (GRCm39) missense possibly damaging 0.88
R0242:Cd96 UTSW 16 45,892,129 (GRCm39) missense possibly damaging 0.88
R0655:Cd96 UTSW 16 45,919,482 (GRCm39) missense probably benign 0.06
R0684:Cd96 UTSW 16 45,938,153 (GRCm39) missense possibly damaging 0.96
R0838:Cd96 UTSW 16 45,938,289 (GRCm39) missense probably damaging 1.00
R1531:Cd96 UTSW 16 45,938,169 (GRCm39) missense probably benign 0.03
R1664:Cd96 UTSW 16 45,938,364 (GRCm39) missense possibly damaging 0.95
R1791:Cd96 UTSW 16 45,938,362 (GRCm39) nonsense probably null
R1840:Cd96 UTSW 16 45,919,455 (GRCm39) missense probably benign 0.36
R1873:Cd96 UTSW 16 45,938,335 (GRCm39) missense probably damaging 1.00
R2895:Cd96 UTSW 16 45,938,168 (GRCm39) missense probably benign 0.43
R2906:Cd96 UTSW 16 45,871,850 (GRCm39) missense possibly damaging 0.56
R4291:Cd96 UTSW 16 45,892,112 (GRCm39) missense probably damaging 0.98
R5112:Cd96 UTSW 16 45,919,301 (GRCm39) missense probably benign
R5261:Cd96 UTSW 16 45,890,016 (GRCm39) missense probably benign 0.39
R5274:Cd96 UTSW 16 45,890,066 (GRCm39) missense possibly damaging 0.78
R5934:Cd96 UTSW 16 45,938,266 (GRCm39) missense probably benign 0.43
R6002:Cd96 UTSW 16 45,938,349 (GRCm39) missense possibly damaging 0.61
R6758:Cd96 UTSW 16 45,938,367 (GRCm39) missense possibly damaging 0.50
R6992:Cd96 UTSW 16 45,870,087 (GRCm39) missense possibly damaging 0.65
R7239:Cd96 UTSW 16 45,929,477 (GRCm39) missense probably damaging 1.00
R7308:Cd96 UTSW 16 45,892,097 (GRCm39) critical splice donor site probably null
R7316:Cd96 UTSW 16 45,890,016 (GRCm39) missense probably benign 0.39
R7355:Cd96 UTSW 16 45,861,655 (GRCm39) missense possibly damaging 0.51
R7553:Cd96 UTSW 16 45,872,384 (GRCm39) missense probably damaging 1.00
R7878:Cd96 UTSW 16 45,938,139 (GRCm39) missense probably damaging 1.00
R7921:Cd96 UTSW 16 45,858,843 (GRCm39) frame shift probably null
R8924:Cd96 UTSW 16 45,919,385 (GRCm39) missense probably damaging 1.00
R9089:Cd96 UTSW 16 45,870,068 (GRCm39) missense probably benign 0.23
R9295:Cd96 UTSW 16 45,938,244 (GRCm39) missense probably benign 0.38
R9433:Cd96 UTSW 16 45,856,298 (GRCm39) missense probably damaging 1.00
R9695:Cd96 UTSW 16 45,919,410 (GRCm39) missense probably damaging 0.96
X0017:Cd96 UTSW 16 45,870,137 (GRCm39) missense possibly damaging 0.95
Predicted Primers PCR Primer
(F):5'- TGTGACGTACAACAGACACGGAC -3'
(R):5'- TCACTGCCTACTGTAGAGCAAGCC -3'

Sequencing Primer
(F):5'- ttatttGACTCCACAGTGAGAATATG -3'
(R):5'- CCTCAATACTGGTTTGCCAGATAG -3'
Posted On 2013-06-12