Mutagenetix > Incidental Mutation

Incidental Mutation 'R5990:Cmtr1'

481982

Institutional Source

Beutler Lab

Gene Symbol

Cmtr1

Ensembl Gene

ENSMUSG00000024019

Gene Name

cap methyltransferase 1

Synonyms

1300018I05Rik, Ftsjd2

MMRRC Submission

044170-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.970) question?

Stock #

R5990 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

29879569-29924953 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 29921135 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 794 (Y794H)

Ref Sequence

ENSEMBL: ENSMUSP00000024816 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024816] [ENSMUST00000123502] [ENSMUST00000128751] [ENSMUST00000129091] [ENSMUST00000130871] [ENSMUST00000131807] [ENSMUST00000137079]

AlphaFold

Q9DBC3

Predicted Effect

probably benign
Transcript: ENSMUST00000024816
AA Change: Y794H

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000024816
Gene: ENSMUSG00000024019
AA Change: Y794H

Domain	Start	End	E-Value	Type
G_patch	84	130	1.93e-10	SMART
Pfam:FtsJ	231	448	9.5e-42	PFAM
SCOP:d1ckma2	625	718	4e-3	SMART
WW	752	785	2.05e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000123502

SMART Domains

Protein: ENSMUSP00000119013
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	9	92	7.6e-34	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000128751

SMART Domains

Protein: ENSMUSP00000123612
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	9	93	2.4e-36	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129091

SMART Domains

Protein: ENSMUSP00000116591
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	10	93	3.1e-36	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130871

SMART Domains

Protein: ENSMUSP00000117838
Gene: ENSMUSG00000098374

Domain	Start	End	E-Value	Type
FHA	37	92	5.55e-8	SMART
low complexity region	116	130	N/A	INTRINSIC
low complexity region	299	317	N/A	INTRINSIC
RING	406	443	3.64e-7	SMART
G_patch	524	570	1.93e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000131807

SMART Domains

Protein: ENSMUSP00000120238
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	5	49	2.1e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000137079

SMART Domains

Protein: ENSMUSP00000115603
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	9	53	1.1e-16	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138939

Meta Mutation Damage Score

0.0850

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.5%
20x: 92.2%

Validation Efficiency

99% (77/78)

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610028H24Rik	A	T	10: 76,285,123 (GRCm39)	M11L	probably benign	Het
Acad10	A	G	5: 121,783,468 (GRCm39)	L319P	probably damaging	Het
Adam12	C	A	7: 133,533,465 (GRCm39)	C471F	probably damaging	Het
Arfgef1	A	G	1: 10,243,146 (GRCm39)	Y1065H	probably damaging	Het
Atp8b3	G	A	10: 80,361,531 (GRCm39)	T797M	possibly damaging	Het
Auts2	G	A	5: 131,505,734 (GRCm39)		probably benign	Het
AW209491	C	T	13: 14,812,365 (GRCm39)	A406V	probably benign	Het
Ccdc146	A	G	5: 21,523,180 (GRCm39)	S286P	probably benign	Het
Chsy3	GT	G	18: 59,309,238 (GRCm39)	163	probably null	Het
Copb2	A	G	9: 98,452,378 (GRCm39)	E54G	probably damaging	Het
Ctsk	A	T	3: 95,408,767 (GRCm39)	H77L	probably damaging	Het
Dnah3	T	C	7: 119,672,764 (GRCm39)	Y546C	probably benign	Het
Ephb2	A	T	4: 136,423,366 (GRCm39)	V304E	probably benign	Het
Ern1	C	T	11: 106,302,595 (GRCm39)	V420I	probably benign	Het
Esrrg	A	T	1: 187,930,995 (GRCm39)	E339V	probably damaging	Het
Fbxo10	A	C	4: 45,061,960 (GRCm39)	F189V	probably damaging	Het
Foxl1	G	T	8: 121,855,160 (GRCm39)	A154S	probably damaging	Het
Frs3	A	G	17: 48,012,602 (GRCm39)	D103G	possibly damaging	Het
Gdpd4	A	G	7: 97,690,137 (GRCm39)	T610A	probably benign	Het
Gm10271	A	T	10: 116,808,497 (GRCm39)	F6L	probably damaging	Het
Gm4847	C	T	1: 166,470,942 (GRCm39)	S36N	probably benign	Het
Grm8	G	T	6: 27,363,623 (GRCm39)	L631I	probably damaging	Het
Ints9	T	A	14: 65,276,777 (GRCm39)	L648Q	probably damaging	Het
Kansl1l	T	C	1: 66,774,885 (GRCm39)	H647R	probably damaging	Het
Kcnq1	T	A	7: 142,815,105 (GRCm39)	H501Q	probably damaging	Het
Kctd20	T	C	17: 29,185,884 (GRCm39)	L409P	probably benign	Het
Kiss1r	A	G	10: 79,754,541 (GRCm39)	T12A	probably benign	Het
Kndc1	T	A	7: 139,507,333 (GRCm39)	V1173E	probably damaging	Het
Kprp	T	C	3: 92,732,081 (GRCm39)	E323G	probably damaging	Het
Krtap10-4	A	T	10: 77,662,441 (GRCm39)		probably benign	Het
Lrrc37a	A	G	11: 103,391,784 (GRCm39)	Y1214H	probably benign	Het
Lysmd3	G	A	13: 81,817,707 (GRCm39)	G228D	probably damaging	Het
Muc16	G	A	9: 18,570,539 (GRCm39)	A660V	unknown	Het
Muc5b	T	C	7: 141,411,898 (GRCm39)	C1615R	unknown	Het
Nans	A	T	4: 46,489,441 (GRCm39)	N28I	probably damaging	Het
Nlrp4b	C	T	7: 10,448,418 (GRCm39)	S207L	possibly damaging	Het
Nrdc	T	G	4: 108,876,268 (GRCm39)	F355V	probably damaging	Het
Nrip2	C	T	6: 128,376,979 (GRCm39)		probably benign	Het
Nufip1	C	T	14: 76,351,628 (GRCm39)	P161L	probably damaging	Het
Ogdhl	C	T	14: 32,049,071 (GRCm39)	H114Y	possibly damaging	Het
Opa1	T	A	16: 29,405,836 (GRCm39)	W134R	probably damaging	Het
Or4k45	T	A	2: 111,395,019 (GRCm39)	I257F	probably damaging	Het
Or8a1b	G	T	9: 37,623,406 (GRCm39)	H56Q	probably damaging	Het
Parp14	G	A	16: 35,661,827 (GRCm39)	P1403S	probably benign	Het
Patl2	T	C	2: 121,954,965 (GRCm39)	D361G	probably damaging	Het
Pcx	A	G	19: 4,671,294 (GRCm39)	D1172G	probably damaging	Het
Phax	A	G	18: 56,708,675 (GRCm39)	T58A	probably benign	Het
Phf11b	T	A	14: 59,562,375 (GRCm39)	I177L	possibly damaging	Het
Pole	T	A	5: 110,450,010 (GRCm39)	V819D	probably damaging	Het
Poll	T	C	19: 45,541,594 (GRCm39)	D458G	possibly damaging	Het
Polr2m	G	A	9: 71,386,602 (GRCm39)		probably null	Het
Ppp1r9a	C	A	6: 5,134,660 (GRCm39)	H928N	probably benign	Het
Prdm2	T	C	4: 142,896,683 (GRCm39)	N102D	probably damaging	Het
Rbm45	A	T	2: 76,200,756 (GRCm39)	D95V	probably benign	Het
Rdh19	A	G	10: 127,695,463 (GRCm39)	M226V	probably benign	Het
Rev3l	T	G	10: 39,699,807 (GRCm39)	S1435A	probably benign	Het
Rgs20	A	G	1: 4,982,553 (GRCm39)	I305T	probably benign	Het
Rhobtb2	T	C	14: 70,033,818 (GRCm39)	N469S	probably damaging	Het
Rif1	C	G	2: 51,985,856 (GRCm39)	L614V	probably damaging	Het
Rps6ka1	A	G	4: 133,593,708 (GRCm39)	I177T	probably damaging	Het
Samd12	T	A	15: 53,583,019 (GRCm39)	D105V	probably damaging	Het
Setd3	A	T	12: 108,126,594 (GRCm39)	D88E	probably benign	Het
Sfmbt2	G	T	2: 10,584,192 (GRCm39)	V850L	possibly damaging	Het
Slc26a10	C	A	10: 127,014,627 (GRCm39)	A195S	possibly damaging	Het
Smcp	C	A	3: 92,491,557 (GRCm39)	A97S	unknown	Het
Stxbp5	G	A	10: 9,711,677 (GRCm39)	H248Y	probably damaging	Het
Syne2	T	C	12: 76,070,918 (GRCm39)	L4457P	probably benign	Het
Tbx3	A	G	5: 119,818,594 (GRCm39)	T390A	probably benign	Het
Tmeff2	G	A	1: 51,018,601 (GRCm39)	W194*	probably null	Het
Tmem120b	G	A	5: 123,242,544 (GRCm39)	R174Q	probably damaging	Het
Trio	A	G	15: 27,891,545 (GRCm39)	V402A	probably benign	Het
Ttll2	C	A	17: 7,619,766 (GRCm39)	G54W	possibly damaging	Het
Uba7	G	A	9: 107,858,433 (GRCm39)	V786M	probably damaging	Het
Vmn2r32	T	C	7: 7,482,809 (GRCm39)	E55G	probably damaging	Het
Wdr35	A	G	12: 9,066,511 (GRCm39)	D724G	probably damaging	Het
Xrcc1	G	A	7: 24,267,293 (GRCm39)	V381M	probably damaging	Het
Zdhhc11	T	A	13: 74,127,303 (GRCm39)	W227R	probably benign	Het
Zfp341	T	C	2: 154,487,579 (GRCm39)	S681P	probably damaging	Het
Zfp735	T	A	11: 73,581,174 (GRCm39)	D70E	possibly damaging	Het
Zmat4	G	A	8: 24,419,279 (GRCm39)	A104T	probably damaging	Het

Other mutations in Cmtr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00391:Cmtr1	APN	17	29,893,236 (GRCm39)	missense	probably damaging	0.99
IGL00980:Cmtr1	APN	17	29,910,258 (GRCm39)	missense	probably benign	0.00
IGL00987:Cmtr1	APN	17	29,916,143 (GRCm39)	missense	probably benign	0.01
IGL01413:Cmtr1	APN	17	29,916,956 (GRCm39)	missense	probably benign	0.00
IGL01481:Cmtr1	APN	17	29,917,631 (GRCm39)	missense	probably benign	0.02
IGL02281:Cmtr1	APN	17	29,910,255 (GRCm39)	missense	probably benign	0.00
IGL03079:Cmtr1	APN	17	29,882,267 (GRCm39)	missense	possibly damaging	0.71
IGL03376:Cmtr1	APN	17	29,910,385 (GRCm39)	missense	probably benign	0.00
PIT4403001:Cmtr1	UTSW	17	29,917,047 (GRCm39)	critical splice donor site	probably null
R0256:Cmtr1	UTSW	17	29,916,098 (GRCm39)	missense	probably damaging	1.00
R0505:Cmtr1	UTSW	17	29,895,259 (GRCm39)	missense	probably benign	0.17
R1477:Cmtr1	UTSW	17	29,916,131 (GRCm39)	missense	possibly damaging	0.63
R1623:Cmtr1	UTSW	17	29,906,021 (GRCm39)	splice site	probably null
R1852:Cmtr1	UTSW	17	29,921,229 (GRCm39)	missense	probably benign	0.32
R1867:Cmtr1	UTSW	17	29,893,148 (GRCm39)	missense	probably benign	0.36
R1918:Cmtr1	UTSW	17	29,897,983 (GRCm39)	missense	possibly damaging	0.63
R2070:Cmtr1	UTSW	17	29,913,757 (GRCm39)	critical splice acceptor site	probably null
R2071:Cmtr1	UTSW	17	29,913,757 (GRCm39)	critical splice acceptor site	probably null
R2161:Cmtr1	UTSW	17	29,921,147 (GRCm39)	missense	probably benign	0.03
R2518:Cmtr1	UTSW	17	29,900,954 (GRCm39)	nonsense	probably null
R2763:Cmtr1	UTSW	17	29,899,602 (GRCm39)	missense	possibly damaging	0.89
R4077:Cmtr1	UTSW	17	29,904,949 (GRCm39)	missense	probably damaging	1.00
R4271:Cmtr1	UTSW	17	29,916,956 (GRCm39)	missense	probably benign	0.00
R4363:Cmtr1	UTSW	17	29,893,206 (GRCm39)	missense	probably damaging	1.00
R4723:Cmtr1	UTSW	17	29,906,131 (GRCm39)	splice site	probably null
R4736:Cmtr1	UTSW	17	29,919,216 (GRCm39)	missense	possibly damaging	0.94
R5056:Cmtr1	UTSW	17	29,909,302 (GRCm39)	missense	possibly damaging	0.64
R5492:Cmtr1	UTSW	17	29,909,316 (GRCm39)	missense	probably damaging	1.00
R5704:Cmtr1	UTSW	17	29,882,217 (GRCm39)	missense	possibly damaging	0.95
R6050:Cmtr1	UTSW	17	29,901,108 (GRCm39)	missense	probably damaging	1.00
R6117:Cmtr1	UTSW	17	29,901,139 (GRCm39)	missense	probably benign	0.43
R6238:Cmtr1	UTSW	17	29,901,122 (GRCm39)	missense	probably damaging	1.00
R7199:Cmtr1	UTSW	17	29,895,174 (GRCm39)	missense	probably benign
R7229:Cmtr1	UTSW	17	29,914,398 (GRCm39)	critical splice acceptor site	probably null
R8337:Cmtr1	UTSW	17	29,893,151 (GRCm39)	missense	probably benign	0.25
R9538:Cmtr1	UTSW	17	29,882,282 (GRCm39)	critical splice donor site	probably null
R9607:Cmtr1	UTSW	17	29,893,196 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GCCTACTGGGTGGAACCTTTAG -3'
(R):5'- TTACGACCAGGGAGAACAGTC -3'

Sequencing Primer
(F):5'- CTACTGGGTGGAACCTTTAGATGCC -3'
(R):5'- AGTTCCTTTCCAAGAGGCAG -3'

Posted On

2017-06-26