Incidental Mutation 'R6020:Usp5'
ID 482053
Institutional Source Beutler Lab
Gene Symbol Usp5
Ensembl Gene ENSMUSG00000038429
Gene Name ubiquitin specific peptidase 5 (isopeptidase T)
Synonyms Ucht
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R6020 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 124791982-124806404 bp(-) (GRCm39)
Type of Mutation unclassified
DNA Base Change (assembly) C to A at 124794576 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000130858 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047510] [ENSMUST00000047510] [ENSMUST00000122110] [ENSMUST00000122110] [ENSMUST00000149610] [ENSMUST00000172132]
AlphaFold P56399
Predicted Effect probably benign
Transcript: ENSMUST00000047510
SMART Domains Protein: ENSMUSP00000041299
Gene: ENSMUSG00000038429

DomainStartEndE-ValueType
low complexity region 2 11 N/A INTRINSIC
Blast:ZnF_UBP 29 78 4e-19 BLAST
ZnF_UBP 198 253 6.47e-27 SMART
low complexity region 497 516 N/A INTRINSIC
UBA 656 694 3.12e-7 SMART
UBA 724 761 8.63e-10 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000047510
SMART Domains Protein: ENSMUSP00000041299
Gene: ENSMUSG00000038429

DomainStartEndE-ValueType
low complexity region 2 11 N/A INTRINSIC
Blast:ZnF_UBP 29 78 4e-19 BLAST
ZnF_UBP 198 253 6.47e-27 SMART
low complexity region 497 516 N/A INTRINSIC
UBA 656 694 3.12e-7 SMART
UBA 724 761 8.63e-10 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000122110
SMART Domains Protein: ENSMUSP00000114000
Gene: ENSMUSG00000038429

DomainStartEndE-ValueType
low complexity region 2 11 N/A INTRINSIC
Blast:ZnF_UBP 29 78 4e-19 BLAST
ZnF_UBP 198 253 6.47e-27 SMART
low complexity region 497 516 N/A INTRINSIC
UBA 633 671 3.12e-7 SMART
UBA 701 738 8.63e-10 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000122110
SMART Domains Protein: ENSMUSP00000114000
Gene: ENSMUSG00000038429

DomainStartEndE-ValueType
low complexity region 2 11 N/A INTRINSIC
Blast:ZnF_UBP 29 78 4e-19 BLAST
ZnF_UBP 198 253 6.47e-27 SMART
low complexity region 497 516 N/A INTRINSIC
UBA 633 671 3.12e-7 SMART
UBA 701 738 8.63e-10 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129159
Predicted Effect noncoding transcript
Transcript: ENSMUST00000131805
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139716
Predicted Effect probably benign
Transcript: ENSMUST00000149610
SMART Domains Protein: ENSMUSP00000125292
Gene: ENSMUSG00000023456

DomainStartEndE-ValueType
Pfam:TIM 1 163 1.1e-65 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154189
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154883
Predicted Effect probably benign
Transcript: ENSMUST00000172132
SMART Domains Protein: ENSMUSP00000130858
Gene: ENSMUSG00000023456

DomainStartEndE-ValueType
Pfam:TIM 57 295 9.2e-86 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204602
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.8%
  • 20x: 93.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Ubiquitin (see MIM 191339)-dependent proteolysis is a complex pathway of protein metabolism implicated in such diverse cellular functions as maintenance of chromatin structure, receptor function, and degradation of abnormal proteins. A late step of the process involves disassembly of the polyubiquitin chains on degraded proteins into ubiquitin monomers. USP5 disassembles branched polyubiquitin chains by a sequential exo mechanism, starting at the proximal end of the chain (Wilkinson et al., 1995 [PubMed 7578059]).[supplied by OMIM, Mar 2010]
PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E7. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca9 C A 11: 110,036,439 (GRCm39) V557F possibly damaging Het
Abi3 A T 11: 95,732,851 (GRCm39) L41* probably null Het
Actn1 C A 12: 80,221,229 (GRCm39) probably null Het
Adamts15 G T 9: 30,813,358 (GRCm39) R936S probably benign Het
Angel2 T C 1: 190,665,068 (GRCm39) S22P probably benign Het
Ank2 T G 3: 126,740,470 (GRCm39) probably benign Het
Astn1 A G 1: 158,337,563 (GRCm39) D423G probably damaging Het
Casp9 A G 4: 141,523,849 (GRCm39) D78G probably damaging Het
Cbr4 A G 8: 61,940,887 (GRCm39) D2G probably benign Het
Ccdc8 T A 7: 16,730,506 (GRCm39) L665H probably damaging Het
Cdh23 T A 10: 60,167,105 (GRCm39) N1847I probably damaging Het
Cnst T C 1: 179,437,440 (GRCm39) W335R probably benign Het
Ddr2 T A 1: 169,832,671 (GRCm39) I130F probably benign Het
Dnah2 C T 11: 69,391,665 (GRCm39) A677T probably benign Het
Dzip3 C A 16: 48,772,205 (GRCm39) W488L probably damaging Het
Ephb3 T G 16: 21,040,763 (GRCm39) I637S probably damaging Het
Etv3 A G 3: 87,436,671 (GRCm39) D142G probably benign Het
Fabp5 C T 3: 10,081,149 (GRCm39) T126I probably benign Het
Fam13b A C 18: 34,627,827 (GRCm39) Y125D probably damaging Het
Fsip2 C A 2: 82,822,471 (GRCm39) P6068Q probably damaging Het
Gm11232 A G 4: 71,674,905 (GRCm39) F199S possibly damaging Het
Gm5493 A G 17: 22,967,034 (GRCm39) K57E probably benign Het
Gm7334 A G 17: 51,006,265 (GRCm39) M184V probably benign Het
Gm9894 T C 13: 67,911,954 (GRCm39) noncoding transcript Het
Gpd2 T A 2: 57,254,525 (GRCm39) N674K probably benign Het
H2-M10.6 A G 17: 37,123,959 (GRCm39) Y141C probably damaging Het
Heatr5a C T 12: 51,931,110 (GRCm39) E1796K probably benign Het
Hexim2 A G 11: 103,029,118 (GRCm39) T57A probably benign Het
Hrg A T 16: 22,773,268 (GRCm39) N134Y probably damaging Het
Hsd17b12 T C 2: 93,864,322 (GRCm39) T262A probably damaging Het
Irak3 G T 10: 119,979,042 (GRCm39) P470T probably damaging Het
Itgbl1 A T 14: 124,083,977 (GRCm39) D285V probably damaging Het
Kcp A T 6: 29,502,863 (GRCm39) V164E probably benign Het
Klhdc7b T A 15: 89,272,589 (GRCm39) M1157K probably damaging Het
Lcor G A 19: 41,571,986 (GRCm39) G247D possibly damaging Het
Mdc1 G A 17: 36,159,525 (GRCm39) G635D probably benign Het
Mdc1 A G 17: 36,168,464 (GRCm39) K1690R probably benign Het
Mpp3 A T 11: 101,909,365 (GRCm39) probably benign Het
Ncor2 G T 5: 125,097,075 (GRCm39) H2285N probably benign Het
Neb T A 2: 52,147,839 (GRCm39) T2727S probably benign Het
Nkx6-2 T C 7: 139,161,483 (GRCm39) D234G possibly damaging Het
Nlrp9c T C 7: 26,084,150 (GRCm39) I476M probably benign Het
Nrsn1 T G 13: 25,437,355 (GRCm39) Q191P probably damaging Het
Or14j10 A T 17: 37,934,858 (GRCm39) S223T possibly damaging Het
Or1e30 C T 11: 73,678,378 (GRCm39) L205F probably benign Het
Or51ag1 T A 7: 103,156,006 (GRCm39) H49L probably benign Het
Patl1 T G 19: 11,914,718 (GRCm39) L623R probably damaging Het
Pdc T C 1: 150,209,117 (GRCm39) I200T probably benign Het
Pdzk1 A G 3: 96,775,742 (GRCm39) D370G probably benign Het
Pglyrp3 A T 3: 91,938,841 (GRCm39) I339F probably damaging Het
Plxnb1 T C 9: 108,945,679 (GRCm39) V2070A probably damaging Het
Poln G A 5: 34,266,775 (GRCm39) R461C probably damaging Het
Prl2b1 C A 13: 27,567,491 (GRCm39) V218L probably damaging Het
Pygl T C 12: 70,263,428 (GRCm39) D55G probably damaging Het
Rif1 C G 2: 51,985,856 (GRCm39) L614V probably damaging Het
Rnd2 C T 11: 101,359,825 (GRCm39) L57F probably damaging Het
Rsrp1 T C 4: 134,651,692 (GRCm39) F152S probably damaging Het
Sim2 T C 16: 93,898,110 (GRCm39) S115P probably damaging Het
Slc17a1 T A 13: 24,059,593 (GRCm39) I108K possibly damaging Het
Slc30a8 A G 15: 52,189,054 (GRCm39) D223G probably damaging Het
Slc39a4 A T 15: 76,500,342 (GRCm39) N69K probably benign Het
Slc51a T G 16: 32,298,584 (GRCm39) T58P probably damaging Het
Slc7a14 T C 3: 31,278,261 (GRCm39) H448R probably benign Het
Smc3 G A 19: 53,613,594 (GRCm39) probably null Het
Sox6 A T 7: 115,085,863 (GRCm39) D659E probably damaging Het
Stard9 GCCC GCC 2: 120,524,196 (GRCm39) probably null Het
Tsr1 C T 11: 74,791,119 (GRCm39) probably null Het
Ttc12 T C 9: 49,354,422 (GRCm39) K565E probably damaging Het
Ube4b A T 4: 149,452,768 (GRCm39) V386E probably benign Het
Ush2a T A 1: 188,460,293 (GRCm39) probably null Het
Vmn1r216 T C 13: 23,284,105 (GRCm39) F263L probably benign Het
Vmn2r88 T A 14: 51,655,606 (GRCm39) L606* probably null Het
Wee2 T A 6: 40,426,554 (GRCm39) probably null Het
Zfhx3 T C 8: 109,519,159 (GRCm39) Y94H probably damaging Het
Zfp385c G A 11: 100,523,594 (GRCm39) P120L probably benign Het
Zscan4-ps3 T C 7: 11,344,228 (GRCm39) F62S probably damaging Het
Other mutations in Usp5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00481:Usp5 APN 6 124,806,316 (GRCm39) missense probably benign 0.00
IGL00905:Usp5 APN 6 124,792,576 (GRCm39) missense probably damaging 1.00
IGL01584:Usp5 APN 6 124,796,350 (GRCm39) missense probably damaging 1.00
IGL01642:Usp5 APN 6 124,797,416 (GRCm39) missense probably damaging 0.99
IGL01787:Usp5 APN 6 124,801,189 (GRCm39) missense possibly damaging 0.95
IGL02394:Usp5 APN 6 124,799,672 (GRCm39) missense probably damaging 1.00
IGL02677:Usp5 APN 6 124,796,389 (GRCm39) missense probably damaging 1.00
IGL03392:Usp5 APN 6 124,803,350 (GRCm39) missense probably damaging 1.00
BB004:Usp5 UTSW 6 124,801,192 (GRCm39) missense probably benign 0.06
BB014:Usp5 UTSW 6 124,801,192 (GRCm39) missense probably benign 0.06
R0594:Usp5 UTSW 6 124,794,387 (GRCm39) missense probably damaging 0.99
R1522:Usp5 UTSW 6 124,802,129 (GRCm39) missense probably benign
R1719:Usp5 UTSW 6 124,800,423 (GRCm39) missense possibly damaging 0.94
R2185:Usp5 UTSW 6 124,794,373 (GRCm39) missense probably damaging 0.99
R3115:Usp5 UTSW 6 124,792,560 (GRCm39) missense probably damaging 1.00
R4196:Usp5 UTSW 6 124,801,901 (GRCm39) missense possibly damaging 0.78
R4347:Usp5 UTSW 6 124,798,158 (GRCm39) missense probably damaging 1.00
R4386:Usp5 UTSW 6 124,795,437 (GRCm39) critical splice donor site probably null
R4500:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4501:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4526:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4527:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4528:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4684:Usp5 UTSW 6 124,794,919 (GRCm39) missense probably damaging 1.00
R4912:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4913:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4954:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4956:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4957:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R4958:Usp5 UTSW 6 124,799,593 (GRCm39) missense possibly damaging 0.71
R5071:Usp5 UTSW 6 124,803,342 (GRCm39) missense probably benign 0.13
R6236:Usp5 UTSW 6 124,795,441 (GRCm39) missense probably benign 0.05
R6370:Usp5 UTSW 6 124,797,391 (GRCm39) missense probably benign 0.01
R7090:Usp5 UTSW 6 124,806,357 (GRCm39) start codon destroyed probably null
R7317:Usp5 UTSW 6 124,803,281 (GRCm39) missense probably damaging 0.98
R7447:Usp5 UTSW 6 124,798,077 (GRCm39) missense probably damaging 1.00
R7572:Usp5 UTSW 6 124,794,970 (GRCm39) missense probably damaging 0.99
R7598:Usp5 UTSW 6 124,803,342 (GRCm39) missense possibly damaging 0.73
R7927:Usp5 UTSW 6 124,801,192 (GRCm39) missense probably benign 0.06
R7931:Usp5 UTSW 6 124,801,409 (GRCm39) intron probably benign
R8089:Usp5 UTSW 6 124,797,373 (GRCm39) critical splice donor site probably null
R8361:Usp5 UTSW 6 124,801,948 (GRCm39) missense probably damaging 1.00
R8544:Usp5 UTSW 6 124,800,480 (GRCm39) missense probably damaging 1.00
R8679:Usp5 UTSW 6 124,794,394 (GRCm39) missense possibly damaging 0.94
R9115:Usp5 UTSW 6 124,803,384 (GRCm39) missense probably damaging 0.97
R9128:Usp5 UTSW 6 124,800,414 (GRCm39) critical splice donor site probably null
R9227:Usp5 UTSW 6 124,795,599 (GRCm39) missense probably damaging 1.00
R9651:Usp5 UTSW 6 124,799,501 (GRCm39) missense possibly damaging 0.91
X0058:Usp5 UTSW 6 124,801,139 (GRCm39) missense probably damaging 1.00
Z1177:Usp5 UTSW 6 124,802,111 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- CCAGGTCATCAATGTGGCTG -3'
(R):5'- TCATCCACAGATTTTGCAAACC -3'

Sequencing Primer
(F):5'- CAATGTGGCTGAAGATCCAGTCTAC -3'
(R):5'- ATCCTGCCTGGCTCCAGTG -3'
Posted On 2017-06-27