Incidental Mutation 'R6074:Tpra1'
| ID |
482637 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tpra1
|
| Ensembl Gene |
ENSMUSG00000002871 |
| Gene Name |
transmembrane protein, adipocyte asscociated 1 |
| Synonyms |
Tpra40, 40kDa, Gpr175 |
| MMRRC Submission |
044235-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.105)
|
| Stock # |
R6074 (G1)
|
| Quality Score |
180.009 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
88879238-88889216 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 88888919 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Asparagine
at position 367
(I367N)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000145050
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000055022]
[ENSMUST00000128790]
[ENSMUST00000129979]
[ENSMUST00000203185]
[ENSMUST00000204765]
[ENSMUST00000150236]
[ENSMUST00000203345]
[ENSMUST00000203694]
[ENSMUST00000203648]
[ENSMUST00000152585]
[ENSMUST00000153874]
|
| AlphaFold |
Q99MU1 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000055022
AA Change: I367N
PolyPhen 2
Score 0.931 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000063042
Gene: ENSMUSG00000002871
AA Change: I367N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
36 |
311 |
9.9e-95 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000123257
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128171
|
| SMART Domains |
Protein: ENSMUSP00000114865
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
1 |
88 |
1.5e-31 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000128790
|
| SMART Domains |
Protein: ENSMUSP00000145116
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
36 |
206 |
2e-51 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000129979
|
| SMART Domains |
Protein: ENSMUSP00000145368
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
30 |
211 |
2e-51 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135778
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138415
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000203185
AA Change: I367N
PolyPhen 2
Score 0.931 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000145168
Gene: ENSMUSG00000002871
AA Change: I367N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
36 |
311 |
9.9e-95 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000204765
AA Change: I367N
PolyPhen 2
Score 0.931 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000145050
Gene: ENSMUSG00000002871
AA Change: I367N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
36 |
311 |
9.9e-95 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000148874
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000153885
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000150236
|
| SMART Domains |
Protein: ENSMUSP00000145098
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
30 |
212 |
1.6e-50 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000151379
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152045
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000203155
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144405
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000203345
|
| SMART Domains |
Protein: ENSMUSP00000144846
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
36 |
170 |
6.2e-45 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000203694
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000203648
|
| SMART Domains |
Protein: ENSMUSP00000145404
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
36 |
222 |
6.6e-59 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000152585
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000153874
|
| SMART Domains |
Protein: ENSMUSP00000118017
Gene: ENSMUSG00000002871
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Tmemb_40
|
32 |
162 |
6.5e-57 |
PFAM |
|
| Meta Mutation Damage Score |
0.0887 |
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.2%
- 20x: 95.1%
|
| Validation Efficiency |
97% (61/63) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 62 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Amigo1 |
T |
A |
3: 108,099,009 (GRCm39) |
C189* |
probably null |
Het |
| Auts2 |
G |
T |
5: 131,505,828 (GRCm39) |
|
probably benign |
Het |
| Cadps2 |
C |
A |
6: 23,626,670 (GRCm39) |
W177L |
probably damaging |
Het |
| Camk2b |
G |
T |
11: 5,939,635 (GRCm39) |
P223Q |
probably damaging |
Het |
| Ccdc74a |
C |
A |
16: 17,464,591 (GRCm39) |
S9* |
probably null |
Het |
| Ccnt1 |
A |
C |
15: 98,441,205 (GRCm39) |
Y688D |
probably damaging |
Het |
| Cdhr1 |
T |
C |
14: 36,801,600 (GRCm39) |
N781S |
probably benign |
Het |
| Ceacam3 |
C |
T |
7: 16,885,484 (GRCm39) |
T29I |
probably benign |
Het |
| Cep170b |
T |
C |
12: 112,710,589 (GRCm39) |
S1473P |
probably damaging |
Het |
| Col19a1 |
T |
A |
1: 24,565,564 (GRCm39) |
T256S |
unknown |
Het |
| Eif2d |
T |
A |
1: 131,094,079 (GRCm39) |
D423E |
probably damaging |
Het |
| Fam13a |
A |
G |
6: 58,966,723 (GRCm39) |
|
probably null |
Het |
| Gaa |
G |
A |
11: 119,175,012 (GRCm39) |
R871H |
probably benign |
Het |
| Galnt12 |
T |
A |
4: 47,112,405 (GRCm39) |
V37D |
probably damaging |
Het |
| Glp2r |
A |
G |
11: 67,637,640 (GRCm39) |
S13P |
unknown |
Het |
| Gnptab |
C |
T |
10: 88,268,940 (GRCm39) |
L548F |
probably damaging |
Het |
| Heg1 |
C |
T |
16: 33,547,573 (GRCm39) |
P787S |
possibly damaging |
Het |
| Hivep2 |
T |
A |
10: 14,007,485 (GRCm39) |
M1361K |
probably benign |
Het |
| Hivep3 |
T |
C |
4: 119,954,891 (GRCm39) |
I1069T |
possibly damaging |
Het |
| Hspg2 |
A |
G |
4: 137,268,046 (GRCm39) |
D2121G |
probably benign |
Het |
| Htatip2 |
A |
G |
7: 49,422,322 (GRCm39) |
|
probably null |
Het |
| Ighv1-75 |
T |
C |
12: 115,798,007 (GRCm39) |
S4G |
probably benign |
Het |
| Ip6k1 |
A |
G |
9: 107,901,308 (GRCm39) |
|
probably benign |
Het |
| Kcna6 |
A |
G |
6: 126,716,242 (GRCm39) |
S216P |
probably benign |
Het |
| Kif21a |
T |
A |
15: 90,865,095 (GRCm39) |
T526S |
probably benign |
Het |
| Kng2 |
C |
T |
16: 22,819,346 (GRCm39) |
G230D |
probably benign |
Het |
| Lgi2 |
A |
T |
5: 52,703,984 (GRCm39) |
F216I |
probably benign |
Het |
| Lratd1 |
G |
A |
12: 14,200,512 (GRCm39) |
H72Y |
probably benign |
Het |
| Lss |
T |
A |
10: 76,379,693 (GRCm39) |
N383K |
probably damaging |
Het |
| Mical1 |
T |
C |
10: 41,362,061 (GRCm39) |
M929T |
probably benign |
Het |
| Mroh2a |
A |
G |
1: 88,186,386 (GRCm39) |
S64G |
probably benign |
Het |
| Nat8f4 |
A |
G |
6: 85,878,169 (GRCm39) |
V118A |
probably damaging |
Het |
| Or10j5 |
T |
A |
1: 172,784,945 (GRCm39) |
N194K |
probably benign |
Het |
| Or4p23 |
A |
C |
2: 88,576,566 (GRCm39) |
L222R |
probably damaging |
Het |
| Or6b2 |
G |
A |
1: 92,407,497 (GRCm39) |
T282M |
probably benign |
Het |
| Osbpl11 |
T |
A |
16: 33,030,335 (GRCm39) |
S188T |
probably benign |
Het |
| Pea15a |
C |
T |
1: 172,026,752 (GRCm39) |
R85H |
possibly damaging |
Het |
| Ppp1r13b |
A |
G |
12: 111,798,836 (GRCm39) |
I919T |
probably damaging |
Het |
| Rasgrf1 |
A |
G |
9: 89,835,968 (GRCm39) |
D232G |
probably benign |
Het |
| Rp1 |
A |
G |
1: 4,415,602 (GRCm39) |
S1837P |
probably benign |
Het |
| Samd5 |
T |
A |
10: 9,550,334 (GRCm39) |
Y125F |
possibly damaging |
Het |
| Skint5 |
T |
C |
4: 113,662,397 (GRCm39) |
T597A |
unknown |
Het |
| Slc25a12 |
A |
G |
2: 71,106,798 (GRCm39) |
F605L |
probably benign |
Het |
| Slc39a12 |
C |
T |
2: 14,412,290 (GRCm39) |
Q321* |
probably null |
Het |
| Slc6a19 |
T |
C |
13: 73,837,882 (GRCm39) |
S206G |
probably benign |
Het |
| Tacc2 |
T |
A |
7: 130,227,165 (GRCm39) |
H1283Q |
possibly damaging |
Het |
| Thumpd3 |
A |
G |
6: 113,036,971 (GRCm39) |
E290G |
possibly damaging |
Het |
| Timd2 |
C |
T |
11: 46,577,999 (GRCm39) |
G44D |
possibly damaging |
Het |
| Tmem74 |
A |
G |
15: 43,730,134 (GRCm39) |
V303A |
possibly damaging |
Het |
| Tpo |
A |
G |
12: 30,128,186 (GRCm39) |
V785A |
probably benign |
Het |
| Txnrd2 |
T |
C |
16: 18,256,297 (GRCm39) |
I95T |
probably damaging |
Het |
| Usp32 |
A |
G |
11: 84,885,399 (GRCm39) |
V1216A |
probably benign |
Het |
| Usp54 |
C |
A |
14: 20,602,167 (GRCm39) |
M1394I |
probably benign |
Het |
| Vmn2r13 |
A |
G |
5: 109,322,167 (GRCm39) |
F177L |
probably benign |
Het |
| Vmn2r82 |
T |
A |
10: 79,232,377 (GRCm39) |
V792E |
probably damaging |
Het |
| Wdfy4 |
C |
T |
14: 32,805,596 (GRCm39) |
|
probably null |
Het |
| Wnk2 |
A |
T |
13: 49,204,875 (GRCm39) |
C458S |
probably damaging |
Het |
| Xkr6 |
T |
G |
14: 63,844,519 (GRCm39) |
F181V |
possibly damaging |
Het |
| Zfp212 |
T |
A |
6: 47,903,986 (GRCm39) |
C149* |
probably null |
Het |
| Zfp647 |
G |
A |
15: 76,796,285 (GRCm39) |
P125L |
probably damaging |
Het |
| Zfp661 |
A |
G |
2: 127,419,793 (GRCm39) |
S116P |
probably benign |
Het |
| Zfp770 |
A |
G |
2: 114,026,870 (GRCm39) |
Y400H |
possibly damaging |
Het |
|
| Other mutations in Tpra1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00491:Tpra1
|
APN |
6 |
88,887,390 (GRCm39) |
splice site |
probably benign |
|
|
IGL00819:Tpra1
|
APN |
6 |
88,886,318 (GRCm39) |
nonsense |
probably null |
|
|
IGL01648:Tpra1
|
APN |
6 |
88,886,653 (GRCm39) |
splice site |
probably benign |
|
|
IGL01810:Tpra1
|
APN |
6 |
88,886,324 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02040:Tpra1
|
APN |
6 |
88,887,164 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
IGL02864:Tpra1
|
APN |
6 |
88,888,868 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0528:Tpra1
|
UTSW |
6 |
88,887,372 (GRCm39) |
missense |
probably benign |
0.12 |
|
R1555:Tpra1
|
UTSW |
6 |
88,887,185 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1824:Tpra1
|
UTSW |
6 |
88,888,805 (GRCm39) |
missense |
probably benign |
|
|
R4774:Tpra1
|
UTSW |
6 |
88,887,661 (GRCm39) |
intron |
probably benign |
|
|
R4879:Tpra1
|
UTSW |
6 |
88,888,691 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7017:Tpra1
|
UTSW |
6 |
88,885,294 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7097:Tpra1
|
UTSW |
6 |
88,885,276 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7122:Tpra1
|
UTSW |
6 |
88,885,276 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7639:Tpra1
|
UTSW |
6 |
88,887,158 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8096:Tpra1
|
UTSW |
6 |
88,888,699 (GRCm39) |
nonsense |
probably null |
|
|
R8975:Tpra1
|
UTSW |
6 |
88,888,726 (GRCm39) |
missense |
probably benign |
|
|
R9434:Tpra1
|
UTSW |
6 |
88,888,774 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9513:Tpra1
|
UTSW |
6 |
88,887,221 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9516:Tpra1
|
UTSW |
6 |
88,887,221 (GRCm39) |
missense |
probably benign |
0.00 |
|
RF012:Tpra1
|
UTSW |
6 |
88,886,324 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AAGAGCCAGACATGCACCTG -3'
(R):5'- ATACACTGCAGCCTTGTGG -3'
|
| Posted On |
2017-07-14 |
Incidental Mutation