Mutagenetix > Incidental Mutation

Incidental Mutation 'R0518:Pank4'

48286

Institutional Source

Beutler Lab

Gene Symbol

Pank4

Ensembl Gene

ENSMUSG00000029056

Gene Name

pantothenate kinase 4

Synonyms

D030031I12Rik

MMRRC Submission

038711-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.152) question?

Stock #

R0518 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

155048580-155065395 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 155061082 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 510 (R510S)

Ref Sequence

ENSEMBL: ENSMUSP00000064330 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030931] [ENSMUST00000070953]

AlphaFold

Q80YV4

Predicted Effect

possibly damaging
Transcript: ENSMUST00000030931
AA Change: R510S

PolyPhen 2 Score 0.905 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000030931
Gene: ENSMUSG00000029056
AA Change: R510S

Domain	Start	End	E-Value	Type
low complexity region	5	15	N/A	INTRINSIC
Pfam:Fumble	35	369	1.5e-142	PFAM
low complexity region	415	428	N/A	INTRINSIC
Pfam:DUF89	451	763	1.4e-64	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000070953
AA Change: R510S

PolyPhen 2 Score 0.905 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000064330
Gene: ENSMUSG00000029056
AA Change: R510S

Domain	Start	End	E-Value	Type
low complexity region	5	15	N/A	INTRINSIC
Pfam:Fumble	36	367	1.8e-133	PFAM
low complexity region	415	428	N/A	INTRINSIC
Pfam:DUF89	451	810	3.1e-64	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000105632

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128297

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129386

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148299

Predicted Effect

unknown
Transcript: ENSMUST00000148934
AA Change: R367S

SMART Domains

Protein: ENSMUSP00000125663
Gene: ENSMUSG00000029056
AA Change: R367S

Domain	Start	End	E-Value	Type
Pfam:Fumble	1	225	2.6e-103	PFAM
low complexity region	273	286	N/A	INTRINSIC
Pfam:DUF89	309	472	1.9e-30	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.6%
20x: 93.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein belonging to the pantothenate kinase family. Pantothenate kinase is a key regulatory enzyme in the biosynthesis of coenzyme A (CoA) in bacteria and mammalian cells. It catalyzes the first committed step in the universal biosynthetic pathway leading to CoA and is itself subject to regulation through feedback inhibition by CoA. This family member is most abundant in muscle but is expressed in all tissues. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	A	G	11: 84,181,112 (GRCm39)		probably null	Het
Acsbg3	T	A	17: 57,192,169 (GRCm39)	Y577*	probably null	Het
Acsm5	T	C	7: 119,135,023 (GRCm39)	V327A	possibly damaging	Het
Agt	C	A	8: 125,283,839 (GRCm39)	E427*	probably null	Het
Akr1c14	T	C	13: 4,131,016 (GRCm39)	L236S	probably damaging	Het
Ammecr1l	C	T	18: 31,904,954 (GRCm39)	S65L	probably benign	Het
Ankrd33b	T	C	15: 31,367,432 (GRCm39)	D36G	probably damaging	Het
Ano8	A	T	8: 71,931,902 (GRCm39)	C766S	probably benign	Het
Arhgef16	G	T	4: 154,375,491 (GRCm39)	P168T	probably damaging	Het
Asic1	C	T	15: 99,596,700 (GRCm39)	R499C	probably damaging	Het
Atpsckmt	T	G	15: 31,606,103 (GRCm39)	S20R	probably benign	Het
Bank1	C	T	3: 135,919,703 (GRCm39)	C364Y	probably damaging	Het
Bmerb1	T	A	16: 13,804,676 (GRCm39)	S8T	possibly damaging	Het
Cacna1s	C	A	1: 136,004,597 (GRCm39)	D132E	probably benign	Het
Capn5	C	T	7: 97,782,089 (GRCm39)	R217Q	probably damaging	Het
Clasrp	A	G	7: 19,322,528 (GRCm39)	I284T	probably benign	Het
Coa3	T	A	11: 101,169,716 (GRCm39)	K13M	probably damaging	Het
Col13a1	A	T	10: 61,698,525 (GRCm39)	M512K	unknown	Het
Colgalt2	G	T	1: 152,384,312 (GRCm39)	A551S	possibly damaging	Het
Crhbp	C	A	13: 95,580,403 (GRCm39)		probably null	Het
Cryba2	T	C	1: 74,929,284 (GRCm39)	Y153C	possibly damaging	Het
Cryzl2	T	C	1: 157,292,000 (GRCm39)	V93A	probably damaging	Het
Ctsl	G	A	13: 64,513,032 (GRCm39)	L297F	possibly damaging	Het
Cyp2r1	T	G	7: 114,152,135 (GRCm39)	H274P	probably benign	Het
Ddx4	A	T	13: 112,761,313 (GRCm39)		probably null	Het
Dnai4	A	C	4: 102,921,727 (GRCm39)	Y464*	probably null	Het
Dnd1	A	G	18: 36,897,096 (GRCm39)	V350A	possibly damaging	Het
Dsg1b	A	T	18: 20,521,221 (GRCm39)	Q26L	probably benign	Het
Fam20b	C	A	1: 156,515,026 (GRCm39)	V280F	possibly damaging	Het
Foxb2	G	T	19: 16,849,820 (GRCm39)	C395*	probably null	Het
Glb1	ACCC	ACC	9: 114,250,812 (GRCm39)		probably null	Het
Gm9930	A	T	10: 9,410,547 (GRCm39)		noncoding transcript	Het
Hdac7	G	A	15: 97,704,380 (GRCm39)	Q497*	probably null	Het
Hk3	C	T	13: 55,162,239 (GRCm39)		probably null	Het
Hsd3b7	A	G	7: 127,402,251 (GRCm39)	T330A	probably benign	Het
Il20ra	A	T	10: 19,635,388 (GRCm39)	Q543L	probably damaging	Het
Itk	T	A	11: 46,251,115 (GRCm39)	D163V	probably damaging	Het
Kcnu1	T	G	8: 26,400,916 (GRCm39)	L688R	probably damaging	Het
Kng1	G	A	16: 22,879,232 (GRCm39)	A45T	possibly damaging	Het
Kti12	T	A	4: 108,705,776 (GRCm39)	V230E	possibly damaging	Het
Lhfpl7	T	A	5: 113,383,873 (GRCm39)	L97*	probably null	Het
Mgat5	T	A	1: 127,312,584 (GRCm39)	I241N	probably damaging	Het
Mkln1	A	G	6: 31,445,067 (GRCm39)	N321S	probably benign	Het
Mllt10	T	G	2: 18,076,017 (GRCm39)		probably null	Het
Ms4a1	C	A	19: 11,236,043 (GRCm39)		probably null	Het
Ngly1	C	T	14: 16,290,774 (GRCm38)	Q419*	probably null	Het
Nipsnap3b	T	A	4: 53,021,343 (GRCm39)	F243I	probably damaging	Het
Ogfod1	T	A	8: 94,781,876 (GRCm39)		probably null	Het
Or10a2	T	A	7: 106,673,965 (GRCm39)	L310Q	possibly damaging	Het
Or2y11	C	T	11: 49,443,291 (GRCm39)	T239M	probably damaging	Het
Or51v8	T	A	7: 103,319,696 (GRCm39)	I181F	possibly damaging	Het
Or8c20	A	C	9: 38,260,499 (GRCm39)	N40T	probably damaging	Het
P2ry14	T	A	3: 59,022,625 (GRCm39)	E287D	probably damaging	Het
Pcsk6	T	A	7: 65,629,915 (GRCm39)	V347E	possibly damaging	Het
Peg3	T	C	7: 6,714,427 (GRCm39)	E265G	probably damaging	Het
Pik3c2b	C	A	1: 133,033,730 (GRCm39)	P1578H	probably damaging	Het
Pkd1	A	G	17: 24,814,193 (GRCm39)	S4188G	probably benign	Het
Ppp1r26	A	G	2: 28,342,314 (GRCm39)	D648G	probably damaging	Het
Ptprs	A	G	17: 56,726,621 (GRCm39)		probably null	Het
Rab24	A	T	13: 55,468,738 (GRCm39)		probably null	Het
Rap1gap2	A	T	11: 74,332,592 (GRCm39)	M71K	probably damaging	Het
Rergl	T	G	6: 139,473,524 (GRCm39)	K42T	probably damaging	Het
Rigi	C	T	4: 40,216,354 (GRCm39)		probably null	Het
Septin5	T	C	16: 18,443,647 (GRCm39)	T92A	probably benign	Het
Ski	A	G	4: 155,243,743 (GRCm39)		probably null	Het
Slc17a8	A	G	10: 89,412,192 (GRCm39)	S414P	probably benign	Het
Slc25a36	A	T	9: 96,979,228 (GRCm39)	I71N	probably damaging	Het
Syne2	A	C	12: 76,155,636 (GRCm39)		probably null	Het
Tdrd5	C	A	1: 156,090,511 (GRCm39)	W845L	probably damaging	Het
Tfb2m	T	C	1: 179,365,389 (GRCm39)	I192V	possibly damaging	Het
Tll1	T	G	8: 64,551,505 (GRCm39)	D292A	probably damaging	Het
Trank1	A	C	9: 111,162,876 (GRCm39)	D45A	probably damaging	Het
Trim17	T	A	11: 58,859,320 (GRCm39)	V178E	probably damaging	Het
Trim9	A	T	12: 70,393,359 (GRCm39)	L195Q	probably damaging	Het
Ttc27	A	T	17: 75,163,544 (GRCm39)	R717S	possibly damaging	Het
Upk2	G	T	9: 44,365,418 (GRCm39)	P50Q	probably damaging	Het
Usp9y	A	T	Y: 1,307,880 (GRCm39)	C2319S	probably benign	Het
Vmn1r4	G	T	6: 56,933,883 (GRCm39)	C129F	probably benign	Het
Vmn2r100	A	T	17: 19,742,178 (GRCm39)	D184V	probably damaging	Het
Xpnpep3	T	G	15: 81,311,693 (GRCm39)	I133S	possibly damaging	Het
Zfp628	A	T	7: 4,922,939 (GRCm39)	Q387L	probably damaging	Het
Zic2	CCCACCACCACCATCACCACCACCACC	CCCACCATCACCACCACCACC	14: 122,713,776 (GRCm39)		probably benign	Het

Other mutations in Pank4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00822:Pank4	APN	4	155,065,059 (GRCm39)	missense	possibly damaging	0.50
IGL01105:Pank4	APN	4	155,056,922 (GRCm39)	splice site	probably benign
IGL01291:Pank4	APN	4	155,059,103 (GRCm39)	missense	probably damaging	0.98
IGL01935:Pank4	APN	4	155,063,987 (GRCm39)	missense	probably damaging	1.00
IGL02366:Pank4	APN	4	155,054,085 (GRCm39)	missense	probably benign	0.03
IGL02514:Pank4	APN	4	155,054,922 (GRCm39)	missense	probably damaging	0.99
IGL03028:Pank4	APN	4	155,054,442 (GRCm39)	unclassified	probably benign
IGL03033:Pank4	APN	4	155,059,172 (GRCm39)	missense	probably damaging	1.00
ANU05:Pank4	UTSW	4	155,059,103 (GRCm39)	missense	probably damaging	0.98
R1196:Pank4	UTSW	4	155,062,630 (GRCm39)	missense	probably damaging	0.99
R1566:Pank4	UTSW	4	155,064,978 (GRCm39)	missense	probably damaging	0.98
R1581:Pank4	UTSW	4	155,059,108 (GRCm39)	missense	probably damaging	1.00
R1709:Pank4	UTSW	4	155,054,504 (GRCm39)	missense	probably damaging	1.00
R1852:Pank4	UTSW	4	155,060,816 (GRCm39)	missense	probably damaging	1.00
R1950:Pank4	UTSW	4	155,056,977 (GRCm39)	missense	probably benign
R2943:Pank4	UTSW	4	155,055,931 (GRCm39)	missense	probably benign	0.01
R3911:Pank4	UTSW	4	155,054,058 (GRCm39)	missense	probably damaging	1.00
R4162:Pank4	UTSW	4	155,064,051 (GRCm39)	critical splice donor site	probably null
R4404:Pank4	UTSW	4	155,064,613 (GRCm39)	missense	probably benign	0.00
R4619:Pank4	UTSW	4	155,061,076 (GRCm39)	missense	probably benign	0.07
R4731:Pank4	UTSW	4	155,055,847 (GRCm39)	missense	probably benign	0.01
R4732:Pank4	UTSW	4	155,055,847 (GRCm39)	missense	probably benign	0.01
R4733:Pank4	UTSW	4	155,055,847 (GRCm39)	missense	probably benign	0.01
R4747:Pank4	UTSW	4	155,063,989 (GRCm39)	missense	probably damaging	1.00
R4760:Pank4	UTSW	4	155,059,091 (GRCm39)	missense	possibly damaging	0.60
R5218:Pank4	UTSW	4	155,064,185 (GRCm39)	missense	probably benign	0.01
R5278:Pank4	UTSW	4	155,056,622 (GRCm39)	missense	probably damaging	1.00
R5774:Pank4	UTSW	4	155,065,119 (GRCm39)	missense	probably damaging	1.00
R6004:Pank4	UTSW	4	155,061,678 (GRCm39)	missense	probably damaging	1.00
R6376:Pank4	UTSW	4	155,056,693 (GRCm39)	splice site	probably null
R7105:Pank4	UTSW	4	155,064,624 (GRCm39)	missense	probably benign	0.07
R7253:Pank4	UTSW	4	155,055,377 (GRCm39)	missense	probably benign	0.02
R7481:Pank4	UTSW	4	155,054,495 (GRCm39)	missense	probably damaging	1.00
R7565:Pank4	UTSW	4	155,065,007 (GRCm39)	missense	probably benign	0.08
R7718:Pank4	UTSW	4	155,059,100 (GRCm39)	missense	probably damaging	1.00
R7736:Pank4	UTSW	4	155,054,204 (GRCm39)	missense	probably benign	0.03
R8144:Pank4	UTSW	4	155,054,537 (GRCm39)	missense	probably benign	0.01
R8967:Pank4	UTSW	4	155,055,415 (GRCm39)	missense	probably benign	0.09
R9012:Pank4	UTSW	4	155,062,847 (GRCm39)	unclassified	probably benign
R9040:Pank4	UTSW	4	155,064,559 (GRCm39)	missense	probably benign	0.00
R9478:Pank4	UTSW	4	155,064,565 (GRCm39)	missense	probably benign
Z1177:Pank4	UTSW	4	155,059,241 (GRCm39)	missense	possibly damaging	0.90
Z1177:Pank4	UTSW	4	155,059,202 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCGGCAGAAATACTGGGGCAAAC -3'
(R):5'- AGGAGTGCTAACACACGCCTAGAG -3'

Sequencing Primer
(F):5'- AAGGGTTCCCTTCTTAGCACAG -3'
(R):5'- CACACGCCTAGAGTAGAGCTG -3'

Posted On

2013-06-12