Mutagenetix > Incidental Mutation

Incidental Mutation 'R6048:Fgd3'

483409

Institutional Source

Beutler Lab

Gene Symbol

Fgd3

Ensembl Gene

ENSMUSG00000037946

Gene Name

FYVE, RhoGEF and PH domain containing 3

Synonyms

ZFYVE5, 5830461L01Rik

MMRRC Submission

044216-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R6048 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

49415030-49473783 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 49427224 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Proline to Serine at position 503 (P503S)

Ref Sequence

ENSEMBL: ENSMUSP00000105713 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048716] [ENSMUST00000110086] [ENSMUST00000110087]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000048716
AA Change: P503S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000048692
Gene: ENSMUSG00000037946
AA Change: P503S

Domain	Start	End	E-Value	Type
low complexity region	87	98	N/A	INTRINSIC
RhoGEF	157	336	1.41e-58	SMART
PH	367	467	3.01e-17	SMART
FYVE	520	585	1.78e-7	SMART
PH	613	713	2.81e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000110086
AA Change: P503S

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000105713
Gene: ENSMUSG00000037946
AA Change: P503S

Domain	Start	End	E-Value	Type
low complexity region	87	98	N/A	INTRINSIC
RhoGEF	157	336	1.41e-58	SMART
PH	367	467	3.01e-17	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000110087
AA Change: P503S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000105714
Gene: ENSMUSG00000037946
AA Change: P503S

Domain	Start	End	E-Value	Type
low complexity region	87	98	N/A	INTRINSIC
RhoGEF	157	336	1.41e-58	SMART
PH	367	467	3.01e-17	SMART
FYVE	520	585	1.78e-7	SMART
PH	613	713	2.81e-8	SMART

Meta Mutation Damage Score

0.0638

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.5%

Validation Efficiency

98% (60/61)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh1a2	T	C	9: 71,169,049 (GRCm39)	I177T	probably damaging	Het
Aopep	T	A	13: 63,388,139 (GRCm39)	F39L	probably damaging	Het
Arl4c	A	G	1: 88,629,350 (GRCm39)	S13P	possibly damaging	Het
Bst1	G	T	5: 43,976,306 (GRCm39)		probably benign	Het
Carmil3	G	A	14: 55,741,302 (GRCm39)	R1029Q	probably benign	Het
Cflar	A	G	1: 58,780,202 (GRCm39)	T269A	probably benign	Het
Clcnka	T	A	4: 141,121,798 (GRCm39)	Y236F	probably damaging	Het
Clmp	T	A	9: 40,682,405 (GRCm39)	I63N	probably damaging	Het
Cln6	T	C	9: 62,751,908 (GRCm39)	L44P	probably damaging	Het
Col5a3	C	T	9: 20,718,915 (GRCm39)	A280T	unknown	Het
Dact2	A	G	17: 14,417,567 (GRCm39)	L211P	probably damaging	Het
Dclk2	G	T	3: 86,813,272 (GRCm39)	Q225K	probably damaging	Het
Ddx60	T	C	8: 62,453,616 (GRCm39)	F1245S	probably benign	Het
Efcab3	A	G	11: 104,835,259 (GRCm39)	K3540E	unknown	Het
Eif3i	T	C	4: 129,487,145 (GRCm39)	N240S	probably benign	Het
Enpp1	T	C	10: 24,536,152 (GRCm39)	Y416C	probably damaging	Het
Epb42	T	A	2: 120,854,889 (GRCm39)	R565S	probably benign	Het
Eral1	G	A	11: 77,966,609 (GRCm39)	P217L	probably benign	Het
Fbxl16	A	G	17: 26,035,967 (GRCm39)	Y188C	probably benign	Het
Frem3	T	C	8: 81,340,062 (GRCm39)	L785P	probably benign	Het
Gadl1	A	G	9: 115,835,769 (GRCm39)		probably null	Het
Gm10787	C	T	10: 76,857,676 (GRCm39)		noncoding transcript	Het
Gm6563	A	G	19: 23,653,246 (GRCm39)	K12R	probably benign	Het
Grm5	T	C	7: 87,675,758 (GRCm39)	L424P	probably damaging	Het
H2ac11	A	G	13: 22,227,006 (GRCm39)	V31A	probably benign	Het
Il17re	T	C	6: 113,447,069 (GRCm39)	S607P	possibly damaging	Het
Ints7	A	G	1: 191,353,524 (GRCm39)		probably benign	Het
Itih1	A	G	14: 30,651,780 (GRCm39)	M854T	possibly damaging	Het
Kif1b	A	G	4: 149,348,086 (GRCm39)	L315P	probably damaging	Het
Ms4a6b	T	C	19: 11,497,734 (GRCm39)	V11A	possibly damaging	Het
Mxd1	C	A	6: 86,627,966 (GRCm39)	D191Y	probably damaging	Het
Nol8	T	A	13: 49,807,160 (GRCm39)		probably null	Het
Ntn4	T	A	10: 93,543,128 (GRCm39)		probably null	Het
Nxph1	A	T	6: 9,247,103 (GRCm39)	T25S	probably benign	Het
Or1n1	A	G	2: 36,749,853 (GRCm39)	V169A	probably benign	Het
Or2bd2	A	C	7: 6,443,354 (GRCm39)	T152P	possibly damaging	Het
Or3a1	A	T	11: 74,225,961 (GRCm39)	I32K	probably benign	Het
Or51f1d	A	G	7: 102,700,526 (GRCm39)	N7S	probably benign	Het
Or5ac20	C	T	16: 59,104,342 (GRCm39)	V173I	probably benign	Het
Or6c219	A	G	10: 129,781,695 (GRCm39)	F79L	possibly damaging	Het
Oxsm	T	A	14: 16,242,308 (GRCm38)	M154L	possibly damaging	Het
Papolg	A	C	11: 23,841,815 (GRCm39)	I36S	probably benign	Het
Pde3b	T	A	7: 114,107,502 (GRCm39)	H544Q	probably benign	Het
Pdzd2	A	T	15: 12,592,656 (GRCm39)		probably null	Het
Prkce	C	A	17: 86,800,775 (GRCm39)	P397Q	probably benign	Het
Ralgapa2	T	C	2: 146,276,765 (GRCm39)	S492G	possibly damaging	Het
Rnf216	A	G	5: 143,054,659 (GRCm39)	Y630H	probably damaging	Het
Ruvbl1	C	T	6: 88,459,973 (GRCm39)	T211I	possibly damaging	Het
Scyl2	A	T	10: 89,481,348 (GRCm39)	D666E	probably benign	Het
Sertad2	A	G	11: 20,598,436 (GRCm39)	T211A	probably benign	Het
Sipa1l1	A	T	12: 82,487,643 (GRCm39)	Q1639L	probably benign	Het
Snx5	T	C	2: 144,101,073 (GRCm39)	D98G	probably damaging	Het
Sorcs2	G	T	5: 36,185,332 (GRCm39)		probably null	Het
Spmip2	T	C	3: 79,313,192 (GRCm39)	S89P	probably damaging	Het
Tanc2	G	A	11: 105,758,543 (GRCm39)	R768Q	probably damaging	Het
Tmem132d	A	G	5: 128,346,181 (GRCm39)	S114P	probably benign	Het
Tns2	G	A	15: 102,019,846 (GRCm39)	G579R	probably damaging	Het
Usp37	A	T	1: 74,517,295 (GRCm39)		probably null	Het
Vmn1r79	T	C	7: 11,910,448 (GRCm39)	I110T	probably damaging	Het
Vps37a	C	T	8: 40,981,363 (GRCm39)	L69F	probably damaging	Het
Xirp2	T	A	2: 67,338,587 (GRCm39)	I276N	possibly damaging	Het
Zfp946	G	A	17: 22,673,821 (GRCm39)	E192K	probably benign	Het

Other mutations in Fgd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00539:Fgd3	APN	13	49,429,119 (GRCm39)	splice site	probably benign
IGL00816:Fgd3	APN	13	49,418,262 (GRCm39)	splice site	probably benign
IGL01797:Fgd3	APN	13	49,443,065 (GRCm39)	missense	probably damaging	1.00
IGL01993:Fgd3	APN	13	49,433,664 (GRCm39)	missense	possibly damaging	0.62
IGL02134:Fgd3	APN	13	49,450,225 (GRCm39)	missense	possibly damaging	0.84
IGL02327:Fgd3	APN	13	49,439,274 (GRCm39)	missense	probably damaging	1.00
IGL02367:Fgd3	APN	13	49,440,802 (GRCm39)	missense	probably damaging	1.00
IGL02532:Fgd3	APN	13	49,439,237 (GRCm39)	missense	probably damaging	1.00
IGL02830:Fgd3	APN	13	49,418,107 (GRCm39)	splice site	probably benign
IGL02888:Fgd3	APN	13	49,435,292 (GRCm39)	critical splice donor site	probably null
IGL03209:Fgd3	APN	13	49,439,294 (GRCm39)	missense	probably damaging	1.00
R0016:Fgd3	UTSW	13	49,450,085 (GRCm39)	missense	probably benign	0.10
R0016:Fgd3	UTSW	13	49,450,085 (GRCm39)	missense	probably benign	0.10
R0064:Fgd3	UTSW	13	49,449,901 (GRCm39)	missense	possibly damaging	0.73
R0064:Fgd3	UTSW	13	49,449,901 (GRCm39)	missense	possibly damaging	0.73
R0285:Fgd3	UTSW	13	49,417,424 (GRCm39)	missense	possibly damaging	0.89
R0526:Fgd3	UTSW	13	49,450,000 (GRCm39)	missense	probably benign	0.00
R0617:Fgd3	UTSW	13	49,418,173 (GRCm39)	missense	possibly damaging	0.80
R0648:Fgd3	UTSW	13	49,450,049 (GRCm39)	missense	probably benign	0.23
R1529:Fgd3	UTSW	13	49,420,170 (GRCm39)	missense	probably benign	0.19
R1577:Fgd3	UTSW	13	49,435,413 (GRCm39)	missense	probably damaging	0.99
R1913:Fgd3	UTSW	13	49,417,324 (GRCm39)	missense	possibly damaging	0.89
R2002:Fgd3	UTSW	13	49,449,931 (GRCm39)	missense	probably benign	0.05
R4342:Fgd3	UTSW	13	49,427,185 (GRCm39)	critical splice donor site	probably null
R4606:Fgd3	UTSW	13	49,450,036 (GRCm39)	missense	probably damaging	1.00
R4810:Fgd3	UTSW	13	49,443,126 (GRCm39)	missense	probably benign	0.01
R4885:Fgd3	UTSW	13	49,417,465 (GRCm39)	missense	possibly damaging	0.66
R4962:Fgd3	UTSW	13	49,420,105 (GRCm39)	missense	probably benign	0.03
R4974:Fgd3	UTSW	13	49,432,078 (GRCm39)	missense	probably damaging	1.00
R5201:Fgd3	UTSW	13	49,449,854 (GRCm39)	missense	probably benign	0.00
R5524:Fgd3	UTSW	13	49,431,053 (GRCm39)	missense	probably damaging	0.97
R5588:Fgd3	UTSW	13	49,440,786 (GRCm39)	missense	probably damaging	1.00
R5710:Fgd3	UTSW	13	49,450,205 (GRCm39)	missense	probably benign	0.00
R5753:Fgd3	UTSW	13	49,428,416 (GRCm39)	missense	possibly damaging	0.94
R6086:Fgd3	UTSW	13	49,440,772 (GRCm39)	missense	probably benign	0.12
R7293:Fgd3	UTSW	13	49,418,134 (GRCm39)	missense	probably benign	0.00
R7311:Fgd3	UTSW	13	49,450,166 (GRCm39)	missense	possibly damaging	0.94
R7383:Fgd3	UTSW	13	49,421,785 (GRCm39)	missense	possibly damaging	0.50
R8205:Fgd3	UTSW	13	49,449,823 (GRCm39)	missense	probably benign	0.11
R8463:Fgd3	UTSW	13	49,420,081 (GRCm39)	missense	possibly damaging	0.89
R8513:Fgd3	UTSW	13	49,417,400 (GRCm39)	missense	probably benign	0.00
Z1176:Fgd3	UTSW	13	49,435,302 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTACTCAAGTCACCAGTACCTG -3'
(R):5'- CTTCAGTTTAGGCGTGGCTC -3'

Sequencing Primer
(F):5'- AGTACCTGGCCTCAGTATAGC -3'
(R):5'- CCGGGAGTCCCAGCATTTATTAGAC -3'

Posted On

2017-07-14