Incidental Mutation 'R6052:Dennd4a'
ID 484165
Institutional Source Beutler Lab
Gene Symbol Dennd4a
Ensembl Gene ENSMUSG00000053641
Gene Name DENN/MADD domain containing 4A
Synonyms F730015K02Rik
MMRRC Submission 044220-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.432) question?
Stock # R6052 (G1)
Quality Score 225.009
Status Validated
Chromosome 9
Chromosomal Location 64811340-64919667 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 64886945 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glycine at position 682 (E682G)
Ref Sequence ENSEMBL: ENSMUSP00000037915 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038890]
AlphaFold E9Q8V6
Predicted Effect probably damaging
Transcript: ENSMUST00000038890
AA Change: E682G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000037915
Gene: ENSMUSG00000053641
AA Change: E682G

DomainStartEndE-ValueType
internal_repeat_1 45 93 3.26e-5 PROSPERO
uDENN 169 276 1.71e-28 SMART
DENN 309 493 2.4e-73 SMART
dDENN 559 633 4.15e-27 SMART
low complexity region 724 735 N/A INTRINSIC
low complexity region 936 950 N/A INTRINSIC
low complexity region 1176 1191 N/A INTRINSIC
low complexity region 1249 1262 N/A INTRINSIC
low complexity region 1402 1417 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000216098
Meta Mutation Damage Score 0.6589 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 94.7%
Validation Efficiency 96% (80/83)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a DENN domain-containing protein that may function as a guanine nucleotide exchange factor that specifically activates ras-related protein Rab-10. This protein also contains a interferon stimulated response element-binding domain and may be involved in regulating the v-myc avian myelocytomatosis viral (MYC) oncogene. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Mar 2016]
Allele List at MGI
Other mutations in this stock
Total: 80 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca17 A G 17: 24,318,191 (GRCm38) F473L probably benign Het
Ankrd17 T C 5: 90,253,832 (GRCm38) I1449V probably benign Het
Aox4 T A 1: 58,254,318 (GRCm38) L943* probably null Het
Arap1 G A 7: 101,404,033 (GRCm38) V1257M probably damaging Het
B3gnt9 T C 8: 105,254,598 (GRCm38) S53G probably benign Het
Baiap3 A T 17: 25,248,470 (GRCm38) probably benign Het
Canx T C 11: 50,297,119 (GRCm38) D554G possibly damaging Het
Cbfa2t2 T C 2: 154,510,581 (GRCm38) V165A probably damaging Het
Ccdc17 C T 4: 116,599,948 (GRCm38) probably null Het
Cdcp1 A G 9: 123,185,331 (GRCm38) I126T probably benign Het
Cdk13 A T 13: 17,721,215 (GRCm38) D1036E probably damaging Het
Cfap157 A G 2: 32,779,851 (GRCm38) L240P probably damaging Het
Clec18a C A 8: 111,078,816 (GRCm38) E218* probably null Het
Col3a1 T C 1: 45,345,013 (GRCm38) probably benign Het
Dnah14 T C 1: 181,666,487 (GRCm38) V1736A possibly damaging Het
Dpep2 T A 8: 105,990,638 (GRCm38) D162V possibly damaging Het
Drd3 C A 16: 43,821,283 (GRCm38) P321T probably benign Het
Egfr A G 11: 16,911,554 (GRCm38) H1111R probably benign Het
Entpd1 T C 19: 40,720,484 (GRCm38) S58P probably damaging Het
Epha3 C A 16: 63,603,604 (GRCm38) V541L possibly damaging Het
Eri3 T A 4: 117,564,628 (GRCm38) D34E probably damaging Het
Eya1 T C 1: 14,283,150 (GRCm38) D58G probably damaging Het
Fat3 T A 9: 15,922,679 (GRCm38) S26C probably null Het
Fgl1 T C 8: 41,200,511 (GRCm38) D115G probably damaging Het
Fitm2 T C 2: 163,470,116 (GRCm38) Y59C probably damaging Het
Fras1 T A 5: 96,764,866 (GRCm38) I3343N probably damaging Het
Gba2 C A 4: 43,568,330 (GRCm38) C679F probably damaging Het
Glis2 G A 16: 4,613,739 (GRCm38) probably benign Het
Gm13088 T A 4: 143,655,652 (GRCm38) D158V probably damaging Het
Gm5150 T A 3: 15,990,753 (GRCm38) I103F probably damaging Het
H2-Ke6 A G 17: 34,027,455 (GRCm38) L118P probably damaging Het
Hhipl2 T C 1: 183,424,057 (GRCm38) S313P possibly damaging Het
Hmgcs1 A G 13: 119,705,459 (GRCm38) D474G probably benign Het
Homer3 C T 8: 70,291,426 (GRCm38) Q267* probably null Het
Igkv8-28 C T 6: 70,143,689 (GRCm38) G90D probably damaging Het
Kalrn T A 16: 34,360,885 (GRCm38) I128F probably damaging Het
Krt4 A G 15: 101,922,759 (GRCm38) probably null Het
Lamb2 T A 9: 108,487,612 (GRCm38) C1188* probably null Het
Lsr A T 7: 30,958,617 (GRCm38) M355K probably damaging Het
Map3k11 T G 19: 5,697,402 (GRCm38) D555E probably benign Het
Myocd A G 11: 65,196,256 (GRCm38) Y282H probably damaging Het
Nae1 T C 8: 104,534,544 (GRCm38) I7M probably benign Het
Nprl3 G T 11: 32,255,453 (GRCm38) H102N possibly damaging Het
Nup62 T A 7: 44,829,040 (GRCm38) F160I possibly damaging Het
Olfr1490 C A 19: 13,654,507 (GRCm38) P26Q possibly damaging Het
Olfr456 T A 6: 42,486,654 (GRCm38) T180S possibly damaging Het
Olfr502 A G 7: 108,523,738 (GRCm38) S71P probably benign Het
Olfr709-ps1 A T 7: 106,926,689 (GRCm38) F257I probably benign Het
Olfr781 C A 10: 129,333,202 (GRCm38) T107K possibly damaging Het
Osbpl10 T C 9: 115,067,315 (GRCm38) probably null Het
Pcdh9 C T 14: 93,885,846 (GRCm38) V963I probably benign Het
Phf12 A G 11: 78,018,218 (GRCm38) R375G probably benign Het
Piezo1 G A 8: 122,506,269 (GRCm38) T108M probably damaging Het
Plxnc1 T A 10: 94,943,773 (GRCm38) Q269L probably benign Het
Pomgnt1 T A 4: 116,151,602 (GRCm38) N11K possibly damaging Het
Prkd1 A T 12: 50,366,300 (GRCm38) probably null Het
Prpf40a T C 2: 53,159,281 (GRCm38) T190A probably benign Het
Prrc2b A C 2: 32,212,285 (GRCm38) H790P possibly damaging Het
Rest T G 5: 77,281,180 (GRCm38) V482G probably benign Het
Ros1 T A 10: 52,163,903 (GRCm38) I322L probably benign Het
Rpl18 G A 7: 45,720,130 (GRCm38) probably benign Het
Rsad2 G A 12: 26,450,578 (GRCm38) H237Y probably benign Het
Sbf2 A G 7: 110,441,534 (GRCm38) L362S probably damaging Het
Sgsm3 A G 15: 81,009,263 (GRCm38) T409A probably benign Het
Slc16a14 T C 1: 84,912,709 (GRCm38) T292A possibly damaging Het
Spg11 T G 2: 122,097,356 (GRCm38) K649T probably damaging Het
Srprb T A 9: 103,190,216 (GRCm38) I268F possibly damaging Het
Tap2 G A 17: 34,214,709 (GRCm38) G566S probably damaging Het
Tecpr2 T C 12: 110,918,891 (GRCm38) V168A possibly damaging Het
Tln1 G C 4: 43,555,052 (GRCm38) F259L probably damaging Het
Tmem181a T A 17: 6,280,615 (GRCm38) L50H probably damaging Het
Tshz1 A G 18: 84,014,069 (GRCm38) I738T probably damaging Het
Tspan12 T C 6: 21,772,638 (GRCm38) E304G probably benign Het
Urb1 C T 16: 90,762,383 (GRCm38) G1671S probably damaging Het
Vmn2r2 T C 3: 64,117,361 (GRCm38) S600G possibly damaging Het
Wnt3 C A 11: 103,808,174 (GRCm38) Y35* probably null Het
Xpo7 T C 14: 70,683,719 (GRCm38) Y603C possibly damaging Het
Zfp457 G A 13: 67,293,951 (GRCm38) H91Y probably damaging Het
Zfp664 T A 5: 124,886,186 (GRCm38) C215S unknown Het
Zfp882 G A 8: 71,914,505 (GRCm38) G392D probably benign Het
Other mutations in Dennd4a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00476:Dennd4a APN 9 64,911,762 (GRCm38) missense probably damaging 1.00
IGL01610:Dennd4a APN 9 64,906,884 (GRCm38) missense probably damaging 0.99
IGL01788:Dennd4a APN 9 64,842,621 (GRCm38) missense probably benign 0.00
IGL01827:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01828:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01829:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL01979:Dennd4a APN 9 64,894,409 (GRCm38) missense probably benign 0.00
IGL02100:Dennd4a APN 9 64,909,706 (GRCm38) splice site probably benign
IGL02339:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL02341:Dennd4a APN 9 64,842,561 (GRCm38) nonsense probably null
IGL02584:Dennd4a APN 9 64,851,298 (GRCm38) missense probably damaging 1.00
IGL02607:Dennd4a APN 9 64,862,327 (GRCm38) missense probably damaging 0.99
IGL02654:Dennd4a APN 9 64,910,191 (GRCm38) splice site probably benign
IGL02701:Dennd4a APN 9 64,897,353 (GRCm38) missense possibly damaging 0.50
IGL03051:Dennd4a APN 9 64,862,414 (GRCm38) missense probably damaging 1.00
IGL03257:Dennd4a APN 9 64,871,874 (GRCm38) missense possibly damaging 0.93
IGL03346:Dennd4a APN 9 64,888,526 (GRCm38) missense possibly damaging 0.47
IGL03349:Dennd4a APN 9 64,888,974 (GRCm38) missense probably damaging 1.00
IGL03398:Dennd4a APN 9 64,871,882 (GRCm38) missense probably benign 0.32
R0010:Dennd4a UTSW 9 64,896,715 (GRCm38) missense probably benign 0.00
R0010:Dennd4a UTSW 9 64,896,715 (GRCm38) missense probably benign 0.00
R0129:Dennd4a UTSW 9 64,893,294 (GRCm38) missense probably damaging 1.00
R0220:Dennd4a UTSW 9 64,852,445 (GRCm38) missense probably damaging 1.00
R0396:Dennd4a UTSW 9 64,862,391 (GRCm38) missense probably damaging 1.00
R0881:Dennd4a UTSW 9 64,851,383 (GRCm38) critical splice donor site probably null
R1225:Dennd4a UTSW 9 64,911,675 (GRCm38) missense probably benign 0.03
R1311:Dennd4a UTSW 9 64,910,004 (GRCm38) missense probably benign 0.34
R1448:Dennd4a UTSW 9 64,906,045 (GRCm38) missense possibly damaging 0.95
R1450:Dennd4a UTSW 9 64,911,665 (GRCm38) missense probably benign 0.03
R1630:Dennd4a UTSW 9 64,871,882 (GRCm38) missense probably benign 0.32
R1709:Dennd4a UTSW 9 64,889,605 (GRCm38) missense possibly damaging 0.92
R1824:Dennd4a UTSW 9 64,859,358 (GRCm38) critical splice donor site probably null
R1851:Dennd4a UTSW 9 64,862,030 (GRCm38) missense probably damaging 1.00
R1870:Dennd4a UTSW 9 64,897,234 (GRCm38) missense probably benign 0.00
R1900:Dennd4a UTSW 9 64,897,336 (GRCm38) missense probably damaging 0.99
R1911:Dennd4a UTSW 9 64,889,086 (GRCm38) missense probably damaging 1.00
R1938:Dennd4a UTSW 9 64,842,490 (GRCm38) missense probably damaging 1.00
R1954:Dennd4a UTSW 9 64,852,467 (GRCm38) missense probably benign 0.02
R1955:Dennd4a UTSW 9 64,852,467 (GRCm38) missense probably benign 0.02
R2049:Dennd4a UTSW 9 64,889,605 (GRCm38) missense possibly damaging 0.92
R2129:Dennd4a UTSW 9 64,905,974 (GRCm38) splice site probably null
R2138:Dennd4a UTSW 9 64,889,337 (GRCm38) missense probably damaging 1.00
R2929:Dennd4a UTSW 9 64,852,417 (GRCm38) missense possibly damaging 0.85
R3083:Dennd4a UTSW 9 64,906,081 (GRCm38) missense probably benign 0.03
R3108:Dennd4a UTSW 9 64,912,387 (GRCm38) missense probably benign 0.23
R3176:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3177:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3276:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3277:Dennd4a UTSW 9 64,888,993 (GRCm38) missense probably damaging 1.00
R3890:Dennd4a UTSW 9 64,872,028 (GRCm38) missense probably damaging 1.00
R3953:Dennd4a UTSW 9 64,852,575 (GRCm38) missense probably damaging 1.00
R3963:Dennd4a UTSW 9 64,862,331 (GRCm38) missense probably damaging 1.00
R4059:Dennd4a UTSW 9 64,911,892 (GRCm38) missense possibly damaging 0.92
R4499:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4500:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4501:Dennd4a UTSW 9 64,910,123 (GRCm38) missense possibly damaging 0.78
R4671:Dennd4a UTSW 9 64,894,407 (GRCm38) missense probably benign
R4701:Dennd4a UTSW 9 64,897,357 (GRCm38) missense possibly damaging 0.91
R4821:Dennd4a UTSW 9 64,897,249 (GRCm38) missense possibly damaging 0.92
R4829:Dennd4a UTSW 9 64,889,056 (GRCm38) missense probably damaging 1.00
R4876:Dennd4a UTSW 9 64,896,590 (GRCm38) missense probably benign
R4881:Dennd4a UTSW 9 64,838,844 (GRCm38) missense possibly damaging 0.77
R4962:Dennd4a UTSW 9 64,906,003 (GRCm38) missense probably benign 0.00
R5225:Dennd4a UTSW 9 64,888,928 (GRCm38) missense possibly damaging 0.94
R5557:Dennd4a UTSW 9 64,904,227 (GRCm38) missense probably benign 0.07
R5649:Dennd4a UTSW 9 64,851,209 (GRCm38) splice site probably null
R5868:Dennd4a UTSW 9 64,896,729 (GRCm38) missense probably benign 0.02
R5876:Dennd4a UTSW 9 64,911,755 (GRCm38) missense probably damaging 1.00
R6411:Dennd4a UTSW 9 64,871,899 (GRCm38) missense probably benign 0.04
R6596:Dennd4a UTSW 9 64,852,420 (GRCm38) missense probably damaging 1.00
R6668:Dennd4a UTSW 9 64,886,965 (GRCm38) missense probably damaging 1.00
R6915:Dennd4a UTSW 9 64,852,489 (GRCm38) nonsense probably null
R7056:Dennd4a UTSW 9 64,906,923 (GRCm38) missense possibly damaging 0.89
R7107:Dennd4a UTSW 9 64,894,399 (GRCm38) missense possibly damaging 0.79
R7203:Dennd4a UTSW 9 64,896,474 (GRCm38) missense probably benign 0.05
R7238:Dennd4a UTSW 9 64,861,956 (GRCm38) missense probably damaging 1.00
R7373:Dennd4a UTSW 9 64,897,269 (GRCm38) missense probably benign 0.01
R7454:Dennd4a UTSW 9 64,852,570 (GRCm38) missense probably damaging 1.00
R7546:Dennd4a UTSW 9 64,873,044 (GRCm38) missense probably damaging 1.00
R7590:Dennd4a UTSW 9 64,888,587 (GRCm38) missense probably benign 0.01
R7662:Dennd4a UTSW 9 64,852,431 (GRCm38) missense probably damaging 1.00
R7782:Dennd4a UTSW 9 64,906,920 (GRCm38) missense probably damaging 0.98
R7909:Dennd4a UTSW 9 64,872,993 (GRCm38) critical splice acceptor site probably null
R7976:Dennd4a UTSW 9 64,852,512 (GRCm38) missense possibly damaging 0.95
R8026:Dennd4a UTSW 9 64,873,030 (GRCm38) missense probably damaging 1.00
R8034:Dennd4a UTSW 9 64,888,568 (GRCm38) missense probably benign 0.01
R8089:Dennd4a UTSW 9 64,849,175 (GRCm38) missense probably damaging 1.00
R8298:Dennd4a UTSW 9 64,906,875 (GRCm38) missense probably benign 0.00
R8397:Dennd4a UTSW 9 64,889,109 (GRCm38) missense probably benign
R8425:Dennd4a UTSW 9 64,838,974 (GRCm38) missense probably damaging 1.00
R8495:Dennd4a UTSW 9 64,886,879 (GRCm38) missense probably damaging 1.00
R8855:Dennd4a UTSW 9 64,912,390 (GRCm38) missense probably benign
R9219:Dennd4a UTSW 9 64,889,094 (GRCm38) missense probably damaging 0.96
R9275:Dennd4a UTSW 9 64,842,624 (GRCm38) missense probably damaging 1.00
R9376:Dennd4a UTSW 9 64,912,692 (GRCm38) missense probably benign 0.00
R9485:Dennd4a UTSW 9 64,907,106 (GRCm38) nonsense probably null
R9672:Dennd4a UTSW 9 64,893,358 (GRCm38) missense probably benign
R9746:Dennd4a UTSW 9 64,894,511 (GRCm38) missense probably benign
X0026:Dennd4a UTSW 9 64,897,320 (GRCm38) missense possibly damaging 0.67
Z1088:Dennd4a UTSW 9 64,872,022 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ATGTTTCAGCAGGTTAGGGTAC -3'
(R):5'- GGATAGGCTTGCTTACCACC -3'

Sequencing Primer
(F):5'- CAGCAGGTTAGGGTACTTTTTAAAG -3'
(R):5'- GGCTTGCTTACCACCTAAAAATTAG -3'
Posted On 2017-07-14