Mutagenetix > Incidental Mutation

Incidental Mutation 'R6056:Tdrd9'

484423

Institutional Source

Beutler Lab

Gene Symbol

Tdrd9

Ensembl Gene

ENSMUSG00000054003

Gene Name

tudor domain containing 9

Synonyms

MMRRC Submission

044223-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.159) question?

Stock #

R6056 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

111971559-112068854 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 111985041 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Asparagine at position 88 (K88N)

Ref Sequence

ENSEMBL: ENSMUSP00000078022 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079009] [ENSMUST00000170525] [ENSMUST00000185354] [ENSMUST00000189759] [ENSMUST00000190536]

AlphaFold

Q14BI7

Predicted Effect

probably damaging
Transcript: ENSMUST00000079009
AA Change: K88N

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000078022
Gene: ENSMUSG00000054003
AA Change: K88N

Domain	Start	End	E-Value	Type
low complexity region	29	40	N/A	INTRINSIC
low complexity region	70	81	N/A	INTRINSIC
DEXDc	132	327	5.64e-21	SMART
HELICc	404	502	3.22e-16	SMART
low complexity region	547	561	N/A	INTRINSIC
HA2	565	666	1.9e-20	SMART
TUDOR	944	1003	1.52e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000170525

SMART Domains

Protein: ENSMUSP00000130014
Gene: ENSMUSG00000091402

Domain	Start	End	E-Value	Type
Pfam:RD3	5	133	5.3e-54	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000185354

SMART Domains

Protein: ENSMUSP00000140987
Gene: ENSMUSG00000091402

Domain	Start	End	E-Value	Type
Pfam:RD3	4	100	2.9e-34	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000189759

SMART Domains

Protein: ENSMUSP00000140454
Gene: ENSMUSG00000091402

Domain	Start	End	E-Value	Type
Pfam:RD3	4	135	2.4e-51	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000190536

SMART Domains

Protein: ENSMUSP00000140410
Gene: ENSMUSG00000091402

Domain	Start	End	E-Value	Type
Pfam:RD3	4	135	2.4e-51	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000190680

Meta Mutation Damage Score

0.0734

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.4%
20x: 95.4%

Validation Efficiency

96% (99/103)

MGI Phenotype

PHENOTYPE: Male homozygous mice are sterile, displaying small testis, arrest of male meiosis and abnormal spermatocyte morphology. Females are fertile. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310002L09Rik	A	T	4: 73,942,878 (GRCm38)	W162R	probably benign	Het
2610507B11Rik	C	A	11: 78,271,384 (GRCm38)	L691I	possibly damaging	Het
4930438A08Rik	C	A	11: 58,293,638 (GRCm38)	P394H	probably damaging	Het
Aggf1	C	T	13: 95,371,615 (GRCm38)	C81Y	probably benign	Het
Agxt2	A	T	15: 10,378,877 (GRCm38)	D188V	probably damaging	Het
Angpt2	T	C	8: 18,698,116 (GRCm38)	K376R	probably benign	Het
Anxa5	A	G	3: 36,450,691 (GRCm38)	S241P	probably damaging	Het
Aox3	A	T	1: 58,169,859 (GRCm38)	K850N	probably damaging	Het
Arid5a	T	C	1: 36,319,392 (GRCm38)	M415T	probably benign	Het
Aspa	T	A	11: 73,308,752 (GRCm38)	N233I	probably damaging	Het
Atp4b	C	T	8: 13,388,782 (GRCm38)	R198Q	probably damaging	Het
Atp8b2	A	T	3: 89,946,221 (GRCm38)	V719E	possibly damaging	Het
Cacna1s	T	G	1: 136,105,836 (GRCm38)	V1017G	probably damaging	Het
Chrna4	G	T	2: 181,029,442 (GRCm38)	Q174K	probably damaging	Het
Chrnb1	A	T	11: 69,786,939 (GRCm38)	V329D	probably damaging	Het
Chst14	T	C	2: 118,927,733 (GRCm38)	L336P	probably damaging	Het
Clec2e	T	C	6: 129,100,809 (GRCm38)	D22G	probably benign	Het
Csrnp2	A	C	15: 100,482,382 (GRCm38)	S343A	probably benign	Het
Dapl1	C	A	2: 59,484,713 (GRCm38)	A2E	probably damaging	Het
Dlec1	G	T	9: 119,121,923 (GRCm38)	R519L	probably damaging	Het
Dmgdh	T	C	13: 93,752,326 (GRCm38)	V824A	probably damaging	Het
Dmgdh	T	A	13: 93,708,743 (GRCm38)	F415I	possibly damaging	Het
Dnah11	T	G	12: 117,928,456 (GRCm38)	T3661P	probably benign	Het
Dnah3	A	G	7: 120,030,031 (GRCm38)	F1434L	probably damaging	Het
Dnajc11	C	A	4: 151,978,126 (GRCm38)		probably benign	Het
Dot1l	A	G	10: 80,786,095 (GRCm38)	E527G	probably damaging	Het
Drc7	T	C	8: 95,075,051 (GRCm38)	L680P	probably damaging	Het
Dysf	T	C	6: 84,106,862 (GRCm38)	Y742H	probably benign	Het
Ece1	A	G	4: 137,961,647 (GRCm38)	Y665C	probably damaging	Het
Emc1	A	G	4: 139,354,222 (GRCm38)	K54E	possibly damaging	Het
Enoph1	C	T	5: 100,067,901 (GRCm38)	T247M	probably damaging	Het
Exoc2	T	C	13: 30,900,829 (GRCm38)	K383R	probably benign	Het
Fam227b	A	T	2: 126,121,052 (GRCm38)	H181Q	probably damaging	Het
Fsip2	A	T	2: 82,985,673 (GRCm38)	M3917L	probably benign	Het
Gtf3a	T	A	5: 146,955,528 (GRCm38)		probably benign	Het
Hgfac	T	A	5: 35,041,629 (GRCm38)	C11*	probably null	Het
Hmcn1	C	A	1: 150,663,909 (GRCm38)	A2944S	probably damaging	Het
Hps5	T	A	7: 46,767,097 (GRCm38)	Y947F	probably benign	Het
Ighv2-5	A	T	12: 113,685,500 (GRCm38)	I111K	probably benign	Het
Inpp5e	A	T	2: 26,407,848 (GRCm38)	L247*	probably null	Het
Kbtbd11	T	C	8: 15,027,577 (GRCm38)	S59P	probably benign	Het
Kctd19	G	A	8: 105,396,450 (GRCm38)	H111Y	probably damaging	Het
Kif1a	T	C	1: 93,024,648 (GRCm38)	D1303G	probably damaging	Het
Kif7	A	G	7: 79,714,094 (GRCm38)	V22A	possibly damaging	Het
Lrit3	A	T	3: 129,789,355 (GRCm38)	C328S	probably damaging	Het
Lrrc37a	G	T	11: 103,497,658 (GRCm38)	Q2314K	unknown	Het
Lurap1	G	T	4: 116,137,402 (GRCm38)	P211T	possibly damaging	Het
Mbd2	T	A	18: 70,580,803 (GRCm38)	N5K	possibly damaging	Het
Mbtps1	A	C	8: 119,515,602 (GRCm38)	L894V	probably benign	Het
Mefv	G	A	16: 3,708,042 (GRCm38)	S787F	possibly damaging	Het
Miip	T	A	4: 147,862,335 (GRCm38)	I289F	probably damaging	Het
Mogat2	T	A	7: 99,223,513 (GRCm38)	I155F	possibly damaging	Het
Mpp3	C	A	11: 102,011,689 (GRCm38)		probably null	Het
Mrrf	A	G	2: 36,177,221 (GRCm38)	K220E	probably damaging	Het
Mtmr6	C	T	14: 60,298,170 (GRCm38)	P485L	probably damaging	Het
Mtor	G	A	4: 148,537,435 (GRCm38)	R1896K	probably benign	Het
Myh3	C	T	11: 67,087,545 (GRCm38)	P453S	probably benign	Het
Nebl	A	G	2: 17,450,234 (GRCm38)	V112A	probably benign	Het
Nmnat2	G	A	1: 153,074,734 (GRCm38)	W55*	probably null	Het
Nprl3	A	G	11: 32,267,432 (GRCm38)	S37P	probably damaging	Het
Olfr1246	T	C	2: 89,591,101 (GRCm38)	N5D	possibly damaging	Het
Oraov1	G	T	7: 144,915,286 (GRCm38)	V17L	possibly damaging	Het
Pcdhga4	T	G	18: 37,686,330 (GRCm38)	S311A	probably benign	Het
Pcdhgb6	T	C	18: 37,743,112 (GRCm38)	V291A	probably benign	Het
Peg10	GAT	GATCAT	6: 4,756,449 (GRCm38)		probably benign	Het
Peg3	T	C	7: 6,709,571 (GRCm38)	E884G	probably damaging	Het
Pgpep1	G	A	8: 70,652,451 (GRCm38)	T53M	probably damaging	Het
Phf12	A	G	11: 78,009,515 (GRCm38)	T146A	probably benign	Het
Polr3k	C	G	2: 181,864,488 (GRCm38)	N10K	probably damaging	Het
Prickle4	C	A	17: 47,690,210 (GRCm38)	G144C	probably damaging	Het
Ptpn6	T	C	6: 124,732,435 (GRCm38)	Y25C	probably damaging	Het
Rad1	A	G	15: 10,488,074 (GRCm38)	I95V	probably damaging	Het
Rad23b	A	G	4: 55,382,540 (GRCm38)	T248A	probably benign	Het
Rapgef3	T	C	15: 97,758,861 (GRCm38)	D299G	probably damaging	Het
Rcc2	T	G	4: 140,717,024 (GRCm38)	V342G	possibly damaging	Het
Rgs3	G	T	4: 62,625,906 (GRCm38)	R136L	probably damaging	Het
Scube2	A	T	7: 109,833,013 (GRCm38)	C399*	probably null	Het
Serpinb3d	T	C	1: 107,079,722 (GRCm38)	Y178C	probably damaging	Het
Slc1a7	A	G	4: 108,012,261 (GRCm38)	T508A	probably benign	Het
Slc29a4	C	T	5: 142,720,077 (GRCm38)	R439C	probably damaging	Het
Sntg2	A	G	12: 30,312,561 (GRCm38)	I62T	probably benign	Het
Sowaha	G	A	11: 53,479,087 (GRCm38)	P274L	probably damaging	Het
Sptan1	A	G	2: 29,996,782 (GRCm38)	N869S	probably benign	Het
Stx18	C	A	5: 38,106,564 (GRCm38)	A64D	probably damaging	Het
Stxbp5	A	G	10: 9,770,686 (GRCm38)	V94A	probably benign	Het
Sult1a1	T	A	7: 126,676,452 (GRCm38)		probably null	Het
Susd1	G	T	4: 59,379,687 (GRCm38)	H313Q	possibly damaging	Het
Tlr5	A	C	1: 182,974,038 (GRCm38)	R302S	possibly damaging	Het
Tnr	C	T	1: 159,886,909 (GRCm38)	T786I	probably damaging	Het
Tprgl	A	G	4: 154,160,095 (GRCm38)	S148P	probably damaging	Het
Trpc4ap	T	A	2: 155,671,074 (GRCm38)	N127I	probably damaging	Het
Tulp2	T	A	7: 45,490,373 (GRCm38)		probably null	Het
Uggt2	C	T	14: 119,035,969 (GRCm38)		probably null	Het
Ulk4	T	A	9: 121,272,955 (GRCm38)	Y19F	probably damaging	Het
Upf1	T	C	8: 70,333,037 (GRCm38)	Y1053C	probably damaging	Het
Vars2	A	T	17: 35,665,788 (GRCm38)	H223Q	probably benign	Het
Vmn2r106	T	A	17: 20,267,544 (GRCm38)		probably null	Het
Ythdc2	T	A	18: 44,840,210 (GRCm38)	F305I	probably damaging	Het
Zfp281	T	C	1: 136,625,440 (GRCm38)	F52S	possibly damaging	Het
Zfp292	A	T	4: 34,809,784 (GRCm38)	C1087S	probably damaging	Het
Zfp335	A	T	2: 164,895,098 (GRCm38)		probably null	Het

Other mutations in Tdrd9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01339:Tdrd9	APN	12	112,040,434 (GRCm38)	missense	probably damaging	1.00
IGL01373:Tdrd9	APN	12	112,040,434 (GRCm38)	missense	probably damaging	1.00
IGL01542:Tdrd9	APN	12	112,046,989 (GRCm38)	missense	possibly damaging	0.94
IGL02967:Tdrd9	APN	12	111,992,488 (GRCm38)	missense	possibly damaging	0.50
IGL03063:Tdrd9	APN	12	112,044,299 (GRCm38)	missense	probably benign	0.00
IGL03107:Tdrd9	APN	12	112,042,840 (GRCm38)	missense	probably damaging	0.98
R0433:Tdrd9	UTSW	12	112,025,581 (GRCm38)	nonsense	probably null
R0453:Tdrd9	UTSW	12	112,068,239 (GRCm38)	missense	probably benign
R0655:Tdrd9	UTSW	12	112,040,465 (GRCm38)	missense	probably damaging	1.00
R0666:Tdrd9	UTSW	12	112,007,580 (GRCm38)	intron	probably benign
R1073:Tdrd9	UTSW	12	112,023,259 (GRCm38)	missense	probably damaging	1.00
R1280:Tdrd9	UTSW	12	112,039,408 (GRCm38)	missense	probably damaging	1.00
R1386:Tdrd9	UTSW	12	112,044,804 (GRCm38)	missense	probably benign	0.21
R1521:Tdrd9	UTSW	12	112,036,410 (GRCm38)	missense	probably damaging	1.00
R1601:Tdrd9	UTSW	12	112,023,253 (GRCm38)	nonsense	probably null
R1651:Tdrd9	UTSW	12	112,024,706 (GRCm38)	missense	probably damaging	0.97
R1715:Tdrd9	UTSW	12	112,036,439 (GRCm38)	missense	possibly damaging	0.62
R1854:Tdrd9	UTSW	12	112,044,812 (GRCm38)	missense	probably damaging	1.00
R1905:Tdrd9	UTSW	12	112,063,627 (GRCm38)	splice site	probably benign
R2386:Tdrd9	UTSW	12	112,015,900 (GRCm38)	missense	probably damaging	1.00
R2863:Tdrd9	UTSW	12	112,031,261 (GRCm38)	missense	probably benign
R2915:Tdrd9	UTSW	12	112,040,461 (GRCm38)	missense	probably damaging	1.00
R2958:Tdrd9	UTSW	12	112,041,672 (GRCm38)	missense	probably damaging	0.97
R4033:Tdrd9	UTSW	12	111,992,539 (GRCm38)	missense	possibly damaging	0.58
R4087:Tdrd9	UTSW	12	112,013,486 (GRCm38)	nonsense	probably null
R4237:Tdrd9	UTSW	12	112,067,625 (GRCm38)	nonsense	probably null
R4482:Tdrd9	UTSW	12	112,014,501 (GRCm38)	critical splice donor site	probably null
R4501:Tdrd9	UTSW	12	112,042,809 (GRCm38)	missense	probably benign	0.00
R4502:Tdrd9	UTSW	12	111,993,825 (GRCm38)	missense	probably damaging	1.00
R4715:Tdrd9	UTSW	12	112,041,689 (GRCm38)	missense	probably benign	0.00
R4803:Tdrd9	UTSW	12	111,996,835 (GRCm38)	nonsense	probably null
R5218:Tdrd9	UTSW	12	112,063,475 (GRCm38)	intron	probably benign
R5275:Tdrd9	UTSW	12	112,051,912 (GRCm38)	nonsense	probably null
R5295:Tdrd9	UTSW	12	112,051,912 (GRCm38)	nonsense	probably null
R5301:Tdrd9	UTSW	12	112,036,529 (GRCm38)	critical splice donor site	probably null
R5339:Tdrd9	UTSW	12	112,027,122 (GRCm38)	missense	probably damaging	1.00
R5500:Tdrd9	UTSW	12	112,023,268 (GRCm38)	missense	probably benign	0.02
R5573:Tdrd9	UTSW	12	111,997,902 (GRCm38)	splice site	probably null
R5590:Tdrd9	UTSW	12	112,051,980 (GRCm38)	missense	probably benign	0.01
R5891:Tdrd9	UTSW	12	112,042,719 (GRCm38)	missense	probably damaging	1.00
R6057:Tdrd9	UTSW	12	112,013,286 (GRCm38)	missense	possibly damaging	0.85
R6125:Tdrd9	UTSW	12	112,068,198 (GRCm38)	missense	possibly damaging	0.89
R6254:Tdrd9	UTSW	12	112,025,900 (GRCm38)	splice site	probably null
R6335:Tdrd9	UTSW	12	112,041,752 (GRCm38)	critical splice donor site	probably null
R6345:Tdrd9	UTSW	12	112,034,608 (GRCm38)	missense	probably damaging	0.99
R6792:Tdrd9	UTSW	12	112,027,113 (GRCm38)	missense	probably benign	0.01
R6956:Tdrd9	UTSW	12	112,036,354 (GRCm38)	splice site	probably benign
R6987:Tdrd9	UTSW	12	112,025,593 (GRCm38)	missense	possibly damaging	0.82
R7090:Tdrd9	UTSW	12	111,992,470 (GRCm38)	missense	probably benign
R7158:Tdrd9	UTSW	12	112,036,366 (GRCm38)	missense	probably benign	0.08
R7220:Tdrd9	UTSW	12	112,014,454 (GRCm38)	missense	probably damaging	1.00
R7478:Tdrd9	UTSW	12	111,985,042 (GRCm38)	missense	probably damaging	1.00
R7489:Tdrd9	UTSW	12	112,067,637 (GRCm38)	missense	probably benign	0.00
R7751:Tdrd9	UTSW	12	111,992,548 (GRCm38)	missense	probably benign	0.09
R7809:Tdrd9	UTSW	12	112,032,721 (GRCm38)	missense	probably damaging	0.99
R7844:Tdrd9	UTSW	12	111,997,952 (GRCm38)	missense	possibly damaging	0.63
R7854:Tdrd9	UTSW	12	112,046,961 (GRCm38)	missense	probably benign	0.00
R7903:Tdrd9	UTSW	12	112,051,976 (GRCm38)	missense	possibly damaging	0.95
R7938:Tdrd9	UTSW	12	112,031,215 (GRCm38)	missense	possibly damaging	0.86
R8018:Tdrd9	UTSW	12	112,044,388 (GRCm38)	missense	probably damaging	0.99
R8018:Tdrd9	UTSW	12	112,032,746 (GRCm38)	missense	probably benign	0.12
R8090:Tdrd9	UTSW	12	112,015,935 (GRCm38)	missense	probably damaging	1.00
R8157:Tdrd9	UTSW	12	111,985,066 (GRCm38)	missense	probably benign	0.44
R8198:Tdrd9	UTSW	12	112,040,429 (GRCm38)	missense	probably damaging	1.00
R8203:Tdrd9	UTSW	12	112,025,630 (GRCm38)	missense	probably damaging	1.00
R8512:Tdrd9	UTSW	12	112,046,193 (GRCm38)	missense	probably benign
R8721:Tdrd9	UTSW	12	112,036,455 (GRCm38)	missense	probably damaging	1.00
R8889:Tdrd9	UTSW	12	112,013,284 (GRCm38)	missense	probably benign	0.07
R8892:Tdrd9	UTSW	12	112,013,284 (GRCm38)	missense	probably benign	0.07
R9276:Tdrd9	UTSW	12	112,014,501 (GRCm38)	critical splice donor site	probably null
R9459:Tdrd9	UTSW	12	112,025,573 (GRCm38)	missense	probably damaging	1.00
R9484:Tdrd9	UTSW	12	112,046,250 (GRCm38)	missense	probably damaging	0.97
R9657:Tdrd9	UTSW	12	112,036,390 (GRCm38)	missense	possibly damaging	0.50
R9745:Tdrd9	UTSW	12	112,042,696 (GRCm38)	missense	probably damaging	0.99
X0018:Tdrd9	UTSW	12	112,039,329 (GRCm38)	missense	probably benign	0.24
Z1177:Tdrd9	UTSW	12	112,015,921 (GRCm38)	missense	probably damaging	1.00
Z1177:Tdrd9	UTSW	12	111,993,891 (GRCm38)	missense	probably damaging	0.96
Z1177:Tdrd9	UTSW	12	111,971,654 (GRCm38)	missense	probably benign	0.08

Predicted Primers

PCR Primer
(F):5'- TCAGTCCATCTCTATCTGGTAACTG -3'
(R):5'- CGAAGAACAGGATATTCTGGCTC -3'

Posted On

2017-07-14