Mutagenetix > Incidental Mutation

Incidental Mutation 'R6114:Lpar5'

485012

Institutional Source

Beutler Lab

Gene Symbol

Lpar5

Ensembl Gene

ENSMUSG00000067714

Gene Name

lysophosphatidic acid receptor 5

Synonyms

LPA5, LOC381810, Gpr92, GPR93

MMRRC Submission

044263-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.079) question?

Stock #

R6114 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

125067920-125082472 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 125081676 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 120 (N120S)

Ref Sequence

ENSEMBL: ENSMUSP00000132511 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088292] [ENSMUST00000140346] [ENSMUST00000171989]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000088292
AA Change: N120S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000085630
Gene: ENSMUSG00000067714
AA Change: N120S

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	313	7.4e-40	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000140346
AA Change: N120S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000119904
Gene: ENSMUSG00000067714
AA Change: N120S

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	164	1.5e-30	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000171989
AA Change: N120S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000132511
Gene: ENSMUSG00000067714
AA Change: N120S

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	313	1.1e-48	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203956

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 94.0%

Validation Efficiency

94% (60/64)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the rhodopsin class of G protein-coupled transmembrane receptors. This protein transmits extracellular signals from lysophosphatidic acid to cells through heterotrimeric G proteins and mediates numerous cellular processes. Many G protein receptors serve as targets for pharmaceutical drugs. Transcript variants of this gene have been described.[provided by RefSeq, Dec 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit resistance to neuropathic pain and myelin sheath alterations. Mice homozygous for a different targeted allele exhibit decreased nociception sensitivity, decreased anxiety-related response and enhanced coordination and spatial learning. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamdec1	C	A	14: 68,571,803 (GRCm38)	V237L	probably benign	Het
Aff1	T	C	5: 103,842,297 (GRCm38)	S878P	probably damaging	Het
Ahcy	A	C	2: 155,062,159 (GRCm38)	L386R	probably damaging	Het
Ank2	T	C	3: 127,011,051 (GRCm38)	N607D	probably damaging	Het
Arid5b	T	C	10: 68,097,744 (GRCm38)	D776G	possibly damaging	Het
Art4	T	A	6: 136,857,213 (GRCm38)	T11S	unknown	Het
Blm	T	C	7: 80,513,487 (GRCm38)	T39A	probably damaging	Het
Cabin1	T	A	10: 75,747,971 (GRCm38)	M221L	probably benign	Het
Cacna1c	T	C	6: 118,596,140 (GRCm38)	T1675A	probably benign	Het
Cacnb2	A	T	2: 14,975,201 (GRCm38)	H285L	possibly damaging	Het
Cchcr1	A	G	17: 35,525,330 (GRCm38)	E339G	probably damaging	Het
Cd14	A	G	18: 36,725,953 (GRCm38)	W150R	probably damaging	Het
Cep162	A	G	9: 87,203,710 (GRCm38)	I1187T	probably benign	Het
Cntnap4	A	G	8: 112,841,753 (GRCm38)	H807R	probably damaging	Het
Copb1	T	A	7: 114,246,801 (GRCm38)	H178L	probably benign	Het
Cpxm2	A	G	7: 132,154,306 (GRCm38)	V103A	probably benign	Het
Egfr	A	G	11: 16,904,374 (GRCm38)	T849A	possibly damaging	Het
Endou	T	A	15: 97,713,876 (GRCm38)	K294*	probably null	Het
Fam208b	G	A	13: 3,590,081 (GRCm38)	T352M	probably damaging	Het
Gm884	T	A	11: 103,617,791 (GRCm38)		probably benign	Het
Hoxd9	A	G	2: 74,699,365 (GRCm38)	N322D	probably damaging	Het
Hsph1	C	A	5: 149,627,387 (GRCm38)	V416L	possibly damaging	Het
Igkv4-78	T	A	6: 69,059,759 (GRCm38)	T97S	possibly damaging	Het
Itga10	G	T	3: 96,649,035 (GRCm38)	C162F	probably damaging	Het
Lmod2	A	G	6: 24,603,692 (GRCm38)	E222G	probably damaging	Het
Lrrk2	A	G	15: 91,747,826 (GRCm38)	I1318V	probably benign	Het
Lst1	T	C	17: 35,188,360 (GRCm38)	T11A	possibly damaging	Het
Mfn1	C	A	3: 32,563,836 (GRCm38)	A106D	probably damaging	Het
Ms4a12	G	T	19: 11,215,290 (GRCm38)	N227K	probably benign	Het
Nr1h4	T	A	10: 89,478,816 (GRCm38)	N273Y	possibly damaging	Het
Nrd1	A	T	4: 109,044,585 (GRCm38)	K617M	probably damaging	Het
Olfr355	A	T	2: 36,927,689 (GRCm38)	C142S	possibly damaging	Het
Olfr516	A	T	7: 108,845,386 (GRCm38)	M208K	possibly damaging	Het
Olfr771	T	A	10: 129,160,333 (GRCm38)	H217L	probably benign	Het
Pcdhgc3	C	G	18: 37,807,872 (GRCm38)	T442R	probably benign	Het
Pcnx2	T	C	8: 125,773,947 (GRCm38)	N1468S	probably damaging	Het
Pde2a	A	T	7: 101,511,112 (GRCm38)		probably null	Het
Pitx2	C	G	3: 129,204,413 (GRCm38)		probably null	Het
Reck	T	A	4: 43,922,895 (GRCm38)	I390N	probably damaging	Het
Rora	A	G	9: 69,371,323 (GRCm38)	N254S	probably benign	Het
Samd4b	A	G	7: 28,522,792 (GRCm38)		probably null	Het
Scn8a	A	G	15: 101,040,596 (GRCm38)	T1949A	probably damaging	Het
Slc22a15	A	T	3: 101,860,852 (GRCm38)	Y346*	probably null	Het
Slc24a5	A	G	2: 125,083,092 (GRCm38)	T218A	probably benign	Het
Slc38a10	G	A	11: 120,129,312 (GRCm38)	Q305*	probably null	Het
Slc45a4	G	A	15: 73,605,604 (GRCm38)	P28S	probably damaging	Het
Smyd5	A	T	6: 85,440,262 (GRCm38)		probably benign	Het
Sox8	T	C	17: 25,567,520 (GRCm38)	D403G	probably damaging	Het
Stx7	A	G	10: 24,184,985 (GRCm38)		probably null	Het
Svil	T	C	18: 5,108,639 (GRCm38)	S1522P	probably damaging	Het
Sycp2	G	C	2: 178,348,245 (GRCm38)	R1403G	probably benign	Het
Tcf25	A	T	8: 123,384,375 (GRCm38)	K192M	probably damaging	Het
Tecpr1	C	T	5: 144,204,640 (GRCm38)	G804S	possibly damaging	Het
Teddm1a	C	G	1: 153,891,868 (GRCm38)	S26C	probably damaging	Het
Usp13	C	T	3: 32,854,669 (GRCm38)	P155S	probably damaging	Het
Usp17lb	T	A	7: 104,840,364 (GRCm38)	D451V	possibly damaging	Het
Vmn1r173	A	G	7: 23,702,829 (GRCm38)	N163S	possibly damaging	Het
Vmn2r103	G	T	17: 19,812,325 (GRCm38)	C787F	probably damaging	Het
Vmn2r106	G	A	17: 20,268,376 (GRCm38)	P587L	probably benign	Het
Wdr24	C	T	17: 25,824,605 (GRCm38)	H134Y	probably benign	Het
Zbtb40	T	A	4: 136,988,691 (GRCm38)	I988F	probably damaging	Het
Zfp536	A	T	7: 37,479,736 (GRCm38)	I84N	probably damaging	Het
Zfp651	T	A	9: 121,765,595 (GRCm38)	F540Y	probably damaging	Het

Other mutations in Lpar5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01719:Lpar5	APN	6	125,082,006 (GRCm38)	missense	possibly damaging	0.94
IGL01830:Lpar5	APN	6	125,081,822 (GRCm38)	missense	probably benign	0.01
IGL01975:Lpar5	APN	6	125,081,787 (GRCm38)	missense	probably damaging	0.99
IGL02021:Lpar5	APN	6	125,081,992 (GRCm38)	nonsense	probably null
IGL02718:Lpar5	APN	6	125,082,244 (GRCm38)	missense	probably damaging	1.00
IGL03027:Lpar5	APN	6	125,082,240 (GRCm38)	missense	probably damaging	1.00
IGL03300:Lpar5	APN	6	125,082,240 (GRCm38)	missense	probably damaging	1.00
F5770:Lpar5	UTSW	6	125,081,727 (GRCm38)	missense	possibly damaging	0.88
R0633:Lpar5	UTSW	6	125,081,991 (GRCm38)	missense	probably benign	0.25
R1639:Lpar5	UTSW	6	125,081,601 (GRCm38)	missense	probably damaging	1.00
R1822:Lpar5	UTSW	6	125,081,415 (GRCm38)	missense	possibly damaging	0.76
R2227:Lpar5	UTSW	6	125,081,135 (GRCm38)	critical splice acceptor site	probably null
R4019:Lpar5	UTSW	6	125,081,675 (GRCm38)	missense	probably damaging	1.00
R4288:Lpar5	UTSW	6	125,081,864 (GRCm38)	missense	probably benign	0.00
R4705:Lpar5	UTSW	6	125,082,207 (GRCm38)	missense	possibly damaging	0.64
R4787:Lpar5	UTSW	6	125,082,498 (GRCm38)	splice site	probably null
R5027:Lpar5	UTSW	6	125,082,147 (GRCm38)	missense	possibly damaging	0.69
R7197:Lpar5	UTSW	6	125,082,384 (GRCm38)	missense	probably benign	0.00
R7779:Lpar5	UTSW	6	125,082,244 (GRCm38)	missense	probably damaging	1.00
R8193:Lpar5	UTSW	6	125,081,339 (GRCm38)	missense	probably benign
R8264:Lpar5	UTSW	6	125,081,502 (GRCm38)	missense	probably damaging	1.00
R9460:Lpar5	UTSW	6	125,081,271 (GRCm38)	start gained	probably benign
R9628:Lpar5	UTSW	6	125,081,985 (GRCm38)	missense	probably damaging	0.96
V7580:Lpar5	UTSW	6	125,081,727 (GRCm38)	missense	possibly damaging	0.88
V7581:Lpar5	UTSW	6	125,081,727 (GRCm38)	missense	possibly damaging	0.88
V7582:Lpar5	UTSW	6	125,081,727 (GRCm38)	missense	possibly damaging	0.88
Z1176:Lpar5	UTSW	6	125,082,072 (GRCm38)	missense	probably damaging	1.00
Z1176:Lpar5	UTSW	6	125,081,379 (GRCm38)	missense	possibly damaging	0.92
Z1177:Lpar5	UTSW	6	125,082,018 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGTCTACAGCCTGGTATTGG -3'
(R):5'- ACAGTGATGTTCTTGTACGTGC -3'

Sequencing Primer
(F):5'- GTATTGGCGACTGGTCTCCC -3'
(R):5'- CTTGTACGTGCAGTGGGAC -3'

Posted On

2017-08-16