Incidental Mutation 'R6114:Tcf25'
ID 485024
Institutional Source Beutler Lab
Gene Symbol Tcf25
Ensembl Gene ENSMUSG00000001472
Gene Name transcription factor 25 (basic helix-loop-helix)
Synonyms Nulp1, 1810041K11Rik, D8Ertd325e, 1100001J13Rik
MMRRC Submission 044263-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R6114 (G1)
Quality Score 225.009
Status Validated
Chromosome 8
Chromosomal Location 124100492-124130574 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 124111114 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Methionine at position 192 (K192M)
Ref Sequence ENSEMBL: ENSMUSP00000148531 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000057934] [ENSMUST00000108840] [ENSMUST00000127664] [ENSMUST00000211932] [ENSMUST00000212470] [ENSMUST00000212569] [ENSMUST00000212571]
AlphaFold Q8R3L2
Predicted Effect probably damaging
Transcript: ENSMUST00000057934
AA Change: K192M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000056485
Gene: ENSMUSG00000001472
AA Change: K192M

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
low complexity region 34 55 N/A INTRINSIC
low complexity region 124 136 N/A INTRINSIC
Pfam:Tcf25 248 588 4.6e-120 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000108840
AA Change: K192M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000104468
Gene: ENSMUSG00000001472
AA Change: K192M

DomainStartEndE-ValueType
low complexity region 3 17 N/A INTRINSIC
low complexity region 34 55 N/A INTRINSIC
low complexity region 124 136 N/A INTRINSIC
Pfam:Tcf25 247 588 2.3e-113 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000127664
SMART Domains Protein: ENSMUSP00000118564
Gene: ENSMUSG00000092329

DomainStartEndE-ValueType
Pfam:Glycos_transf_2 104 287 7.4e-31 PFAM
Pfam:Glyco_transf_7C 261 331 4.9e-8 PFAM
RICIN 406 531 9.28e-27 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000211932
AA Change: K192M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000211964
Predicted Effect probably damaging
Transcript: ENSMUST00000212470
AA Change: K167M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably damaging
Transcript: ENSMUST00000212569
AA Change: K167M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably damaging
Transcript: ENSMUST00000212571
AA Change: K192M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000212498
Predicted Effect noncoding transcript
Transcript: ENSMUST00000212741
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.0%
  • 20x: 94.0%
Validation Efficiency 94% (60/64)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] TCF25 is a member of the basic helix-loop-helix (bHLH) family of transcription factors that are important in embryonic development (Steen and Lindholm, 2008 [PubMed 18068114]).[supplied by OMIM, Sep 2008]
Allele List at MGI
Other mutations in this stock
Total: 63 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamdec1 C A 14: 68,809,252 (GRCm39) V237L probably benign Het
Aff1 T C 5: 103,990,163 (GRCm39) S878P probably damaging Het
Ahcy A C 2: 154,904,079 (GRCm39) L386R probably damaging Het
Ank2 T C 3: 126,804,700 (GRCm39) N607D probably damaging Het
Arid5b T C 10: 67,933,574 (GRCm39) D776G possibly damaging Het
Art4 T A 6: 136,834,211 (GRCm39) T11S unknown Het
Blm T C 7: 80,163,235 (GRCm39) T39A probably damaging Het
Cabin1 T A 10: 75,583,805 (GRCm39) M221L probably benign Het
Cacna1c T C 6: 118,573,101 (GRCm39) T1675A probably benign Het
Cacnb2 A T 2: 14,980,012 (GRCm39) H285L possibly damaging Het
Cchcr1 A G 17: 35,836,227 (GRCm39) E339G probably damaging Het
Cd14 A G 18: 36,859,006 (GRCm39) W150R probably damaging Het
Cep162 A G 9: 87,085,763 (GRCm39) I1187T probably benign Het
Cntnap4 A G 8: 113,568,385 (GRCm39) H807R probably damaging Het
Copb1 T A 7: 113,846,036 (GRCm39) H178L probably benign Het
Cpxm2 A G 7: 131,756,035 (GRCm39) V103A probably benign Het
Egfr A G 11: 16,854,374 (GRCm39) T849A possibly damaging Het
Endou T A 15: 97,611,757 (GRCm39) K294* probably null Het
Hoxd9 A G 2: 74,529,709 (GRCm39) N322D probably damaging Het
Hsph1 C A 5: 149,550,852 (GRCm39) V416L possibly damaging Het
Igkv4-78 T A 6: 69,036,743 (GRCm39) T97S possibly damaging Het
Itga10 G T 3: 96,556,351 (GRCm39) C162F probably damaging Het
Lmod2 A G 6: 24,603,691 (GRCm39) E222G probably damaging Het
Lpar5 A G 6: 125,058,639 (GRCm39) N120S probably damaging Het
Lrrc37 T A 11: 103,508,617 (GRCm39) probably benign Het
Lrrk2 A G 15: 91,632,029 (GRCm39) I1318V probably benign Het
Lst1 T C 17: 35,407,336 (GRCm39) T11A possibly damaging Het
Mfn1 C A 3: 32,617,985 (GRCm39) A106D probably damaging Het
Ms4a12 G T 19: 11,192,654 (GRCm39) N227K probably benign Het
Nr1h4 T A 10: 89,314,678 (GRCm39) N273Y possibly damaging Het
Nrdc A T 4: 108,901,782 (GRCm39) K617M probably damaging Het
Or10a3b A T 7: 108,444,593 (GRCm39) M208K possibly damaging Het
Or1l8 A T 2: 36,817,701 (GRCm39) C142S possibly damaging Het
Or6c202 T A 10: 128,996,202 (GRCm39) H217L probably benign Het
Pcdhgc3 C G 18: 37,940,925 (GRCm39) T442R probably benign Het
Pcnx2 T C 8: 126,500,686 (GRCm39) N1468S probably damaging Het
Pde2a A T 7: 101,160,319 (GRCm39) probably null Het
Pitx2 C G 3: 128,998,062 (GRCm39) probably null Het
Reck T A 4: 43,922,895 (GRCm39) I390N probably damaging Het
Rora A G 9: 69,278,605 (GRCm39) N254S probably benign Het
Samd4b A G 7: 28,222,217 (GRCm39) probably null Het
Scn8a A G 15: 100,938,477 (GRCm39) T1949A probably damaging Het
Slc22a15 A T 3: 101,768,168 (GRCm39) Y346* probably null Het
Slc24a5 A G 2: 124,925,012 (GRCm39) T218A probably benign Het
Slc38a10 G A 11: 120,020,138 (GRCm39) Q305* probably null Het
Slc45a4 G A 15: 73,477,453 (GRCm39) P28S probably damaging Het
Smyd5 A T 6: 85,417,244 (GRCm39) probably benign Het
Sox8 T C 17: 25,786,494 (GRCm39) D403G probably damaging Het
Stx7 A G 10: 24,060,883 (GRCm39) probably null Het
Svil T C 18: 5,108,639 (GRCm39) S1522P probably damaging Het
Sycp2 G C 2: 177,990,038 (GRCm39) R1403G probably benign Het
Tasor2 G A 13: 3,640,081 (GRCm39) T352M probably damaging Het
Tecpr1 C T 5: 144,141,458 (GRCm39) G804S possibly damaging Het
Teddm1a C G 1: 153,767,614 (GRCm39) S26C probably damaging Het
Usp13 C T 3: 32,908,818 (GRCm39) P155S probably damaging Het
Usp17lb T A 7: 104,489,571 (GRCm39) D451V possibly damaging Het
Vmn1r173 A G 7: 23,402,254 (GRCm39) N163S possibly damaging Het
Vmn2r103 G T 17: 20,032,587 (GRCm39) C787F probably damaging Het
Vmn2r106 G A 17: 20,488,638 (GRCm39) P587L probably benign Het
Wdr24 C T 17: 26,043,579 (GRCm39) H134Y probably benign Het
Zbtb40 T A 4: 136,716,002 (GRCm39) I988F probably damaging Het
Zbtb47 T A 9: 121,594,661 (GRCm39) F540Y probably damaging Het
Zfp536 A T 7: 37,179,161 (GRCm39) I84N probably damaging Het
Other mutations in Tcf25
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01790:Tcf25 APN 8 124,119,975 (GRCm39) missense possibly damaging 0.87
IGL02638:Tcf25 APN 8 124,126,031 (GRCm39) missense probably damaging 1.00
IGL03112:Tcf25 APN 8 124,109,258 (GRCm39) splice site probably benign
R0492:Tcf25 UTSW 8 124,108,203 (GRCm39) missense probably benign 0.00
R1081:Tcf25 UTSW 8 124,108,212 (GRCm39) missense probably benign 0.00
R1543:Tcf25 UTSW 8 124,115,326 (GRCm39) missense probably benign 0.01
R1634:Tcf25 UTSW 8 124,123,830 (GRCm39) missense possibly damaging 0.68
R1662:Tcf25 UTSW 8 124,108,289 (GRCm39) missense probably benign 0.00
R2253:Tcf25 UTSW 8 124,100,772 (GRCm39) missense probably benign 0.21
R4326:Tcf25 UTSW 8 124,127,882 (GRCm39) nonsense probably null
R4327:Tcf25 UTSW 8 124,127,882 (GRCm39) nonsense probably null
R4667:Tcf25 UTSW 8 124,123,764 (GRCm39) missense possibly damaging 0.89
R4977:Tcf25 UTSW 8 124,115,374 (GRCm39) missense probably benign 0.03
R5248:Tcf25 UTSW 8 124,100,678 (GRCm39) missense probably damaging 1.00
R5249:Tcf25 UTSW 8 124,115,372 (GRCm39) missense probably damaging 1.00
R5759:Tcf25 UTSW 8 124,108,196 (GRCm39) missense probably benign 0.00
R5806:Tcf25 UTSW 8 124,108,243 (GRCm39) missense probably benign 0.09
R5813:Tcf25 UTSW 8 124,122,354 (GRCm39) splice site probably null
R5905:Tcf25 UTSW 8 124,108,176 (GRCm39) missense possibly damaging 0.78
R6028:Tcf25 UTSW 8 124,108,176 (GRCm39) missense possibly damaging 0.78
R6349:Tcf25 UTSW 8 124,118,332 (GRCm39) missense probably damaging 1.00
R6904:Tcf25 UTSW 8 124,127,437 (GRCm39) critical splice donor site probably null
R7232:Tcf25 UTSW 8 124,127,800 (GRCm39) splice site probably null
R7287:Tcf25 UTSW 8 124,100,711 (GRCm39) missense possibly damaging 0.74
R9062:Tcf25 UTSW 8 124,116,448 (GRCm39) missense
R9135:Tcf25 UTSW 8 124,108,182 (GRCm39) missense probably benign 0.00
R9396:Tcf25 UTSW 8 124,127,831 (GRCm39) missense probably benign 0.00
RF007:Tcf25 UTSW 8 124,122,369 (GRCm39) missense probably benign 0.03
Z1176:Tcf25 UTSW 8 124,100,645 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- AGTTCCTGCCACAGTTGTTG -3'
(R):5'- CACTACGGATGTAAATATGTTCCC -3'

Sequencing Primer
(F):5'- AAATTGGTCTCAGTGTGGTCAAAGC -3'
(R):5'- ACGGATGTAAATATGTTCCCCCTGTG -3'
Posted On 2017-08-16