Incidental Mutation 'R6088:St6galnac3'
ID 486077
Institutional Source Beutler Lab
Gene Symbol St6galnac3
Ensembl Gene ENSMUSG00000052544
Gene Name ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Synonyms ST6GalNAc III, Siat7c
MMRRC Submission 044245-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R6088 (G1)
Quality Score 225.009
Status Validated
Chromosome 3
Chromosomal Location 152903911-153430804 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 152912352 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Serine at position 164 (G164S)
Ref Sequence ENSEMBL: ENSMUSP00000068598 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000064460] [ENSMUST00000200397]
AlphaFold Q9WUV2
Predicted Effect probably damaging
Transcript: ENSMUST00000064460
AA Change: G164S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000068598
Gene: ENSMUSG00000052544
AA Change: G164S

DomainStartEndE-ValueType
transmembrane domain 9 28 N/A INTRINSIC
Pfam:Glyco_transf_29 43 299 7.6e-35 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000199707
AA Change: G31S

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
Predicted Effect possibly damaging
Transcript: ENSMUST00000200397
AA Change: G212S

PolyPhen 2 Score 0.899 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000143747
Gene: ENSMUSG00000052544
AA Change: G212S

DomainStartEndE-ValueType
transmembrane domain 9 28 N/A INTRINSIC
Pfam:Glyco_transf_29 43 299 7.6e-35 PFAM
Meta Mutation Damage Score 0.2217 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.7%
  • 20x: 92.9%
Validation Efficiency 98% (59/60)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ST6GALNAC3 belongs to a family of sialyltransferases that transfer sialic acids from CMP-sialic acid to terminal positions of carbohydrate groups in glycoproteins and glycolipids (Lee et al., 1999 [PubMed 10207017]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 58 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts19 G T 18: 59,035,174 (GRCm39) V360F probably damaging Het
Ankrd17 C T 5: 90,401,547 (GRCm39) E1605K possibly damaging Het
Arid4a A G 12: 71,069,010 (GRCm39) D54G probably damaging Het
Baz2a TCTCCTC TCTC 10: 127,950,511 (GRCm39) probably benign Het
Bltp3a G A 17: 28,103,579 (GRCm39) probably null Het
Card6 A T 15: 5,134,501 (GRCm39) V234E possibly damaging Het
Cd1d1 G T 3: 86,906,009 (GRCm39) Q89K probably benign Het
Ciita G A 16: 10,329,795 (GRCm39) R693K probably damaging Het
Cox7a2l G T 17: 83,811,401 (GRCm39) L77I probably benign Het
Crybg2 A T 4: 133,803,101 (GRCm39) probably null Het
Cts8 T C 13: 61,401,780 (GRCm39) N39S probably benign Het
Def8 G T 8: 124,186,787 (GRCm39) E456* probably null Het
Dld A G 12: 31,390,988 (GRCm39) F153L probably benign Het
Elf1 C T 14: 79,804,701 (GRCm39) T122I probably benign Het
Emilin2 T C 17: 71,562,119 (GRCm39) N961S probably benign Het
Esp24 A G 17: 39,350,901 (GRCm39) I34V probably benign Het
Fam184b C A 5: 45,741,354 (GRCm39) K292N probably damaging Het
Gabrg3 T A 7: 56,634,826 (GRCm39) N119I probably damaging Het
Gucy1b1 T C 3: 81,942,187 (GRCm39) H524R probably damaging Het
Kcp A T 6: 29,502,631 (GRCm39) S205T probably benign Het
Klb C T 5: 65,506,356 (GRCm39) T201M probably benign Het
Lamp3 A T 16: 19,492,148 (GRCm39) F365L probably damaging Het
Mad1l1 T A 5: 140,179,718 (GRCm39) H390L probably benign Het
Mlxipl T C 5: 135,162,884 (GRCm39) Y711H possibly damaging Het
Myo5b T A 18: 74,853,969 (GRCm39) L1196Q possibly damaging Het
Ndufb8 A G 19: 44,543,464 (GRCm39) S70P probably benign Het
Neb T C 2: 52,099,354 (GRCm39) D4832G probably damaging Het
Niban2 T C 2: 32,813,135 (GRCm39) V540A probably damaging Het
Nr5a1 T C 2: 38,592,007 (GRCm39) D322G probably benign Het
Or1e1d-ps1 A T 11: 73,819,649 (GRCm39) T273S probably benign Het
Or5ak20 T A 2: 85,183,698 (GRCm39) S191C probably damaging Het
Oscar G A 7: 3,614,311 (GRCm39) P143S probably benign Het
Oxa1l T A 14: 54,605,151 (GRCm39) probably null Het
Pafah2 A G 4: 134,140,692 (GRCm39) I221V probably benign Het
Pibf1 T A 14: 99,416,794 (GRCm39) F456I probably benign Het
Pla2g4d C T 2: 120,100,487 (GRCm39) G615D probably damaging Het
Plekhg2 C T 7: 28,060,438 (GRCm39) V964I probably benign Het
Ppip5k1 C A 2: 121,167,944 (GRCm39) V770L probably benign Het
Ppl A T 16: 4,922,852 (GRCm39) L213Q possibly damaging Het
Ptprf G A 4: 118,067,952 (GRCm39) T1785I possibly damaging Het
Pycr2 G A 1: 180,733,801 (GRCm39) G131E probably damaging Het
Rbpj C T 5: 53,808,710 (GRCm39) probably null Het
Rcc1 G T 4: 132,060,153 (GRCm39) D430E probably benign Het
Rhbdf1 A G 11: 32,162,007 (GRCm39) V525A possibly damaging Het
Samd7 G A 3: 30,810,632 (GRCm39) M216I probably benign Het
Ska3 A T 14: 58,054,151 (GRCm39) D266E probably benign Het
Slc1a7 G A 4: 107,869,641 (GRCm39) V569M probably damaging Het
Slc26a1 C T 5: 108,821,872 (GRCm39) E6K possibly damaging Het
Slc4a4 T A 5: 89,345,563 (GRCm39) V741E probably benign Het
Tgs1 T A 4: 3,595,383 (GRCm39) N517K probably benign Het
Tns4 A G 11: 98,964,546 (GRCm39) S522P probably damaging Het
Trpm1 A T 7: 63,917,724 (GRCm39) M355L probably damaging Het
Trpm8 G A 1: 88,234,400 (GRCm39) probably benign Het
V1ra8 T C 6: 90,180,082 (GRCm39) F95S probably damaging Het
Zfp521 A C 18: 13,979,166 (GRCm39) S416A possibly damaging Het
Zfp574 T A 7: 24,779,764 (GRCm39) V262E probably benign Het
Zfp740 T A 15: 102,117,243 (GRCm39) I77N probably damaging Het
Zscan18 A T 7: 12,509,125 (GRCm39) probably benign Het
Other mutations in St6galnac3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00430:St6galnac3 APN 3 153,215,040 (GRCm39) missense probably benign 0.00
IGL03104:St6galnac3 APN 3 152,911,115 (GRCm39) missense probably damaging 1.00
IGL03144:St6galnac3 APN 3 152,911,164 (GRCm39) missense probably damaging 1.00
R1606:St6galnac3 UTSW 3 152,912,305 (GRCm39) missense probably benign 0.22
R4285:St6galnac3 UTSW 3 152,912,360 (GRCm39) missense probably benign 0.01
R4722:St6galnac3 UTSW 3 153,117,166 (GRCm39) missense probably damaging 1.00
R6488:St6galnac3 UTSW 3 153,117,394 (GRCm39) missense probably damaging 1.00
R6967:St6galnac3 UTSW 3 152,912,345 (GRCm39) missense probably damaging 1.00
R7073:St6galnac3 UTSW 3 153,117,274 (GRCm39) missense possibly damaging 0.95
R7144:St6galnac3 UTSW 3 153,117,169 (GRCm39) missense possibly damaging 0.81
R7680:St6galnac3 UTSW 3 152,911,047 (GRCm39) missense probably damaging 1.00
R8016:St6galnac3 UTSW 3 152,911,129 (GRCm39) missense probably damaging 1.00
R8151:St6galnac3 UTSW 3 153,117,217 (GRCm39) missense probably damaging 1.00
R9209:St6galnac3 UTSW 3 153,117,360 (GRCm39) missense possibly damaging 0.78
R9379:St6galnac3 UTSW 3 153,215,070 (GRCm39) missense probably benign 0.00
R9603:St6galnac3 UTSW 3 153,117,177 (GRCm39) missense probably benign 0.07
Z1176:St6galnac3 UTSW 3 152,931,339 (GRCm39) missense probably null
Predicted Primers PCR Primer
(F):5'- AGAACACCCGGAAATAATTGTCATC -3'
(R):5'- TAGTGCGAGCAAGAGTGTGC -3'

Sequencing Primer
(F):5'- CACCCGGAAATAATTGTCATCTGATC -3'
(R):5'- AGCAAGAGTGTGCCTATAAATTATTC -3'
Posted On 2017-08-16