Incidental Mutation 'R6034:Stard13'
ID 486435
Institutional Source Beutler Lab
Gene Symbol Stard13
Ensembl Gene ENSMUSG00000016128
Gene Name StAR related lipid transfer domain containing 13
Synonyms GT650, DLC2
MMRRC Submission 044206-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R6034 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 150960975-151157301 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to T at 151018965 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000143819 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000062015] [ENSMUST00000062015] [ENSMUST00000110483] [ENSMUST00000110483] [ENSMUST00000126770] [ENSMUST00000126770] [ENSMUST00000126770] [ENSMUST00000126770] [ENSMUST00000129088] [ENSMUST00000129088] [ENSMUST00000129088] [ENSMUST00000129088] [ENSMUST00000202111] [ENSMUST00000202111] [ENSMUST00000202111] [ENSMUST00000202111] [ENSMUST00000202365] [ENSMUST00000202365] [ENSMUST00000202365] [ENSMUST00000202365]
AlphaFold Q923Q2
Predicted Effect probably null
Transcript: ENSMUST00000062015
SMART Domains Protein: ENSMUSP00000053232
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Pfam:SAM_2 59 120 2.6e-6 PFAM
low complexity region 197 216 N/A INTRINSIC
low complexity region 322 340 N/A INTRINSIC
low complexity region 473 486 N/A INTRINSIC
low complexity region 612 624 N/A INTRINSIC
RhoGAP 693 884 2.37e-50 SMART
START 927 1129 2.08e-40 SMART
Predicted Effect probably null
Transcript: ENSMUST00000062015
SMART Domains Protein: ENSMUSP00000053232
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Pfam:SAM_2 59 120 2.6e-6 PFAM
low complexity region 197 216 N/A INTRINSIC
low complexity region 322 340 N/A INTRINSIC
low complexity region 473 486 N/A INTRINSIC
low complexity region 612 624 N/A INTRINSIC
RhoGAP 693 884 2.37e-50 SMART
START 927 1129 2.08e-40 SMART
Predicted Effect probably null
Transcript: ENSMUST00000110483
SMART Domains Protein: ENSMUSP00000106109
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
PDB:2JW2|A 50 120 1e-37 PDB
low complexity region 197 216 N/A INTRINSIC
low complexity region 322 340 N/A INTRINSIC
low complexity region 473 486 N/A INTRINSIC
low complexity region 612 624 N/A INTRINSIC
RhoGAP 674 865 2.37e-50 SMART
START 908 1110 2.08e-40 SMART
Predicted Effect probably null
Transcript: ENSMUST00000110483
SMART Domains Protein: ENSMUSP00000106109
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
PDB:2JW2|A 50 120 1e-37 PDB
low complexity region 197 216 N/A INTRINSIC
low complexity region 322 340 N/A INTRINSIC
low complexity region 473 486 N/A INTRINSIC
low complexity region 612 624 N/A INTRINSIC
RhoGAP 674 865 2.37e-50 SMART
START 908 1110 2.08e-40 SMART
Predicted Effect probably null
Transcript: ENSMUST00000126770
SMART Domains Protein: ENSMUSP00000122468
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Pfam:SAM_2 44 105 7.6e-8 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000126770
SMART Domains Protein: ENSMUSP00000122468
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Pfam:SAM_2 44 105 7.6e-8 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000126770
SMART Domains Protein: ENSMUSP00000122468
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Pfam:SAM_2 44 105 7.6e-8 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000126770
SMART Domains Protein: ENSMUSP00000122468
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Pfam:SAM_2 44 105 7.6e-8 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000129088
SMART Domains Protein: ENSMUSP00000116705
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Blast:SAM 40 104 6e-32 BLAST
PDB:2JW2|A 42 104 8e-33 PDB
Predicted Effect probably null
Transcript: ENSMUST00000129088
SMART Domains Protein: ENSMUSP00000116705
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Blast:SAM 40 104 6e-32 BLAST
PDB:2JW2|A 42 104 8e-33 PDB
Predicted Effect probably null
Transcript: ENSMUST00000129088
SMART Domains Protein: ENSMUSP00000116705
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Blast:SAM 40 104 6e-32 BLAST
PDB:2JW2|A 42 104 8e-33 PDB
Predicted Effect probably null
Transcript: ENSMUST00000129088
SMART Domains Protein: ENSMUSP00000116705
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
Blast:SAM 40 104 6e-32 BLAST
PDB:2JW2|A 42 104 8e-33 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000141117
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146814
Predicted Effect noncoding transcript
Transcript: ENSMUST00000201680
Predicted Effect probably null
Transcript: ENSMUST00000202111
SMART Domains Protein: ENSMUSP00000144056
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
low complexity region 79 98 N/A INTRINSIC
low complexity region 204 222 N/A INTRINSIC
low complexity region 355 368 N/A INTRINSIC
low complexity region 494 506 N/A INTRINSIC
RhoGAP 556 747 1.4e-52 SMART
START 790 992 1.4e-42 SMART
Predicted Effect probably null
Transcript: ENSMUST00000202111
SMART Domains Protein: ENSMUSP00000144056
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
low complexity region 79 98 N/A INTRINSIC
low complexity region 204 222 N/A INTRINSIC
low complexity region 355 368 N/A INTRINSIC
low complexity region 494 506 N/A INTRINSIC
RhoGAP 556 747 1.4e-52 SMART
START 790 992 1.4e-42 SMART
Predicted Effect probably null
Transcript: ENSMUST00000202111
SMART Domains Protein: ENSMUSP00000144056
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
low complexity region 79 98 N/A INTRINSIC
low complexity region 204 222 N/A INTRINSIC
low complexity region 355 368 N/A INTRINSIC
low complexity region 494 506 N/A INTRINSIC
RhoGAP 556 747 1.4e-52 SMART
START 790 992 1.4e-42 SMART
Predicted Effect probably null
Transcript: ENSMUST00000202111
SMART Domains Protein: ENSMUSP00000144056
Gene: ENSMUSG00000016128

DomainStartEndE-ValueType
low complexity region 79 98 N/A INTRINSIC
low complexity region 204 222 N/A INTRINSIC
low complexity region 355 368 N/A INTRINSIC
low complexity region 494 506 N/A INTRINSIC
RhoGAP 556 747 1.4e-52 SMART
START 790 992 1.4e-42 SMART
Predicted Effect probably null
Transcript: ENSMUST00000202365
Predicted Effect probably null
Transcript: ENSMUST00000202365
Predicted Effect probably null
Transcript: ENSMUST00000202365
Predicted Effect probably null
Transcript: ENSMUST00000202365
Predicted Effect noncoding transcript
Transcript: ENSMUST00000202866
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 94.9%
Validation Efficiency 96% (55/57)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which contains an N-terminal sterile alpha motif (SAM) for protein-protein interactions, followed by an ATP/GTP-binding motif, a GTPase-activating protein (GAP) domain, and a C-terminal STAR-related lipid transfer (START) domain. It may be involved in regulation of cytoskeletal reorganization, cell proliferation, and cell motility, and acts as a tumor suppressor in hepatoma cells. The gene is located in a region of chromosome 13 that is associated with loss of heterozygosity in hepatocellular carcinomas. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit small body size, decreased weight, and reduced adipose tissue. Mice homozygous for another knock-out allele exhibit increased angiogenesis in matrigel plugs and implanted tumors. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arhgef4 G T 1: 34,760,984 (GRCm39) G80V unknown Het
Ash1l T C 3: 88,892,326 (GRCm39) Y1402H probably damaging Het
Atad2 A T 15: 57,971,959 (GRCm39) L306Q probably damaging Het
Atp2b4 T A 1: 133,659,645 (GRCm39) probably null Het
Atp6v1c2 C A 12: 17,357,501 (GRCm39) G95V possibly damaging Het
Birc6 T A 17: 74,922,278 (GRCm39) V2192E probably damaging Het
Catsperb A G 12: 101,542,091 (GRCm39) E597G probably benign Het
Ccdc40 A G 11: 119,133,898 (GRCm39) M556V possibly damaging Het
Ccin G A 4: 43,985,354 (GRCm39) R587K probably benign Het
Cdipt T G 7: 126,577,497 (GRCm39) V81G probably damaging Het
Cert1 A C 13: 96,746,308 (GRCm39) I236L probably benign Het
Cfh T C 1: 140,090,869 (GRCm39) K40E probably damaging Het
Cps1 T A 1: 67,196,872 (GRCm39) probably null Het
Dnah7c A T 1: 46,496,418 (GRCm39) D101V probably benign Het
Fastkd3 T A 13: 68,731,729 (GRCm39) W17R probably damaging Het
Gapdh T C 6: 125,142,261 (GRCm39) D25G probably benign Het
H1f4 A G 13: 23,806,296 (GRCm39) L62P probably damaging Het
H2-Ob T C 17: 34,460,192 (GRCm39) V30A probably damaging Het
Hmgxb3 T A 18: 61,265,594 (GRCm39) H1128L probably damaging Het
Hspbp1 A T 7: 4,680,711 (GRCm39) I255N probably damaging Het
Imp4 A G 1: 34,482,537 (GRCm39) D91G probably damaging Het
Itprid1 T A 6: 55,944,666 (GRCm39) D462E possibly damaging Het
Kcnip4 G T 5: 48,548,283 (GRCm39) R241S possibly damaging Het
Lilra5 T C 7: 4,245,133 (GRCm39) L259P probably benign Het
Lipf T C 19: 33,942,289 (GRCm39) I73T probably benign Het
Lsm7 T C 10: 80,688,742 (GRCm39) probably null Het
Luzp2 T A 7: 54,816,972 (GRCm39) L141M probably damaging Het
Malrd1 T A 2: 15,850,137 (GRCm39) V1252E possibly damaging Het
Map10 T C 8: 126,399,205 (GRCm39) L866P probably damaging Het
Mink1 AAGCAGCAGCAGCAGCAGCAGCAG AAGCAGCAGCAGCAGCAGCAG 11: 70,497,866 (GRCm39) probably benign Het
Mpp2 T C 11: 101,952,460 (GRCm39) I355V possibly damaging Het
Mtrf1l T A 10: 5,773,834 (GRCm39) probably benign Het
Myo5c A T 9: 75,163,187 (GRCm39) T339S probably benign Het
Naa15 A G 3: 51,350,242 (GRCm39) D163G probably damaging Het
Oosp2 A G 19: 11,628,879 (GRCm39) F74S probably damaging Het
Or1e16 AGCGGTCGTAGGC AGC 11: 73,286,480 (GRCm39) probably null Het
Or4f7 T A 2: 111,644,702 (GRCm39) Y123F probably damaging Het
Pard3 C G 8: 127,791,077 (GRCm39) probably benign Het
Pcdha1 T A 18: 37,063,651 (GRCm39) I105N probably damaging Het
Pcdhgb8 A G 18: 37,895,601 (GRCm39) T224A possibly damaging Het
Phf12 A G 11: 77,908,895 (GRCm39) N325S probably benign Het
Prom1 T A 5: 44,201,750 (GRCm39) probably null Het
Raet1e A G 10: 22,057,990 (GRCm39) *252W probably null Het
Sap130 T C 18: 31,822,459 (GRCm39) V655A possibly damaging Het
Sec16b A T 1: 157,380,509 (GRCm39) K360I probably damaging Het
Sec23ip C T 7: 128,351,927 (GRCm39) T101I possibly damaging Het
Selenoo A G 15: 88,983,546 (GRCm39) K529R probably benign Het
Slc22a15 A G 3: 101,770,235 (GRCm39) F451L possibly damaging Het
St6gal2 T A 17: 55,789,982 (GRCm39) S339T probably benign Het
Synm A G 7: 67,384,653 (GRCm39) V561A probably damaging Het
Tc2n A T 12: 101,617,460 (GRCm39) probably null Het
Ugt2b36 T A 5: 87,229,377 (GRCm39) D236V probably damaging Het
Vmn1r65 A G 7: 6,011,868 (GRCm39) L122P probably damaging Het
Zc3h14 T C 12: 98,737,632 (GRCm39) S40P probably benign Het
Zc3hav1l C A 6: 38,272,215 (GRCm39) G185C probably damaging Het
Zfp563 G A 17: 33,323,935 (GRCm39) A177T probably damaging Het
Other mutations in Stard13
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00639:Stard13 APN 5 150,965,704 (GRCm39) missense probably damaging 1.00
IGL01362:Stard13 APN 5 151,113,417 (GRCm39) missense probably benign 0.05
IGL01588:Stard13 APN 5 150,968,702 (GRCm39) missense probably damaging 1.00
IGL01947:Stard13 APN 5 150,986,309 (GRCm39) missense probably damaging 1.00
IGL02294:Stard13 APN 5 150,986,580 (GRCm39) missense probably benign 0.19
IGL02713:Stard13 APN 5 150,965,651 (GRCm39) nonsense probably null
IGL02746:Stard13 APN 5 150,970,322 (GRCm39) splice site probably benign
IGL02827:Stard13 APN 5 150,986,591 (GRCm39) missense probably benign 0.07
R0498:Stard13 UTSW 5 150,975,942 (GRCm39) missense probably damaging 1.00
R1427:Stard13 UTSW 5 150,969,456 (GRCm39) missense probably damaging 0.99
R1785:Stard13 UTSW 5 150,968,633 (GRCm39) missense probably damaging 1.00
R1857:Stard13 UTSW 5 151,018,903 (GRCm39) missense probably damaging 1.00
R1858:Stard13 UTSW 5 151,018,903 (GRCm39) missense probably damaging 1.00
R2130:Stard13 UTSW 5 150,968,633 (GRCm39) missense probably damaging 1.00
R2131:Stard13 UTSW 5 150,968,633 (GRCm39) missense probably damaging 1.00
R2132:Stard13 UTSW 5 150,968,633 (GRCm39) missense probably damaging 1.00
R2133:Stard13 UTSW 5 150,968,633 (GRCm39) missense probably damaging 1.00
R2258:Stard13 UTSW 5 150,963,196 (GRCm39) missense probably damaging 1.00
R3435:Stard13 UTSW 5 150,965,644 (GRCm39) missense probably damaging 1.00
R4080:Stard13 UTSW 5 151,016,294 (GRCm39) critical splice acceptor site probably null
R4081:Stard13 UTSW 5 151,016,294 (GRCm39) critical splice acceptor site probably null
R4082:Stard13 UTSW 5 151,016,294 (GRCm39) critical splice acceptor site probably null
R4233:Stard13 UTSW 5 150,986,164 (GRCm39) missense probably benign 0.00
R4288:Stard13 UTSW 5 150,968,642 (GRCm39) missense probably damaging 1.00
R4303:Stard13 UTSW 5 150,986,334 (GRCm39) missense possibly damaging 0.82
R4659:Stard13 UTSW 5 150,986,253 (GRCm39) missense probably benign 0.01
R4695:Stard13 UTSW 5 150,984,280 (GRCm39) missense probably benign 0.08
R4910:Stard13 UTSW 5 150,985,992 (GRCm39) missense probably benign
R5135:Stard13 UTSW 5 150,986,232 (GRCm39) nonsense probably null
R5338:Stard13 UTSW 5 150,983,063 (GRCm39) missense probably damaging 1.00
R5399:Stard13 UTSW 5 150,971,266 (GRCm39) nonsense probably null
R5546:Stard13 UTSW 5 150,969,366 (GRCm39) missense probably benign 0.03
R5685:Stard13 UTSW 5 150,986,592 (GRCm39) missense possibly damaging 0.78
R5771:Stard13 UTSW 5 151,113,476 (GRCm39) missense probably damaging 1.00
R6034:Stard13 UTSW 5 151,018,965 (GRCm39) splice site probably null
R6141:Stard13 UTSW 5 150,965,707 (GRCm39) missense probably damaging 1.00
R6171:Stard13 UTSW 5 151,016,227 (GRCm39) missense probably damaging 1.00
R6296:Stard13 UTSW 5 150,986,138 (GRCm39) missense probably damaging 1.00
R6326:Stard13 UTSW 5 150,970,384 (GRCm39) missense possibly damaging 0.95
R6508:Stard13 UTSW 5 150,986,754 (GRCm39) missense probably benign 0.06
R7252:Stard13 UTSW 5 150,986,634 (GRCm39) missense probably benign 0.01
R7318:Stard13 UTSW 5 150,986,038 (GRCm39) nonsense probably null
R7459:Stard13 UTSW 5 150,971,064 (GRCm39) missense probably damaging 1.00
R7571:Stard13 UTSW 5 150,982,967 (GRCm39) missense probably damaging 0.97
R7696:Stard13 UTSW 5 150,984,267 (GRCm39) missense probably damaging 0.99
R7809:Stard13 UTSW 5 151,113,489 (GRCm39) missense probably damaging 0.98
R7962:Stard13 UTSW 5 150,975,838 (GRCm39) missense probably damaging 0.99
R7970:Stard13 UTSW 5 150,986,726 (GRCm39) missense possibly damaging 0.83
R8103:Stard13 UTSW 5 150,970,435 (GRCm39) missense possibly damaging 0.92
R8113:Stard13 UTSW 5 150,986,970 (GRCm39) missense probably damaging 0.99
R8263:Stard13 UTSW 5 151,157,106 (GRCm39) missense possibly damaging 0.81
R8392:Stard13 UTSW 5 150,965,627 (GRCm39) missense probably benign 0.24
R8490:Stard13 UTSW 5 150,987,090 (GRCm39) missense probably damaging 1.00
R8726:Stard13 UTSW 5 150,986,607 (GRCm39) missense probably benign 0.28
R8896:Stard13 UTSW 5 150,986,115 (GRCm39) missense probably damaging 1.00
R8939:Stard13 UTSW 5 150,968,574 (GRCm39) critical splice donor site probably null
R8946:Stard13 UTSW 5 150,984,267 (GRCm39) missense probably damaging 1.00
R9157:Stard13 UTSW 5 151,157,152 (GRCm39) missense probably benign 0.00
R9257:Stard13 UTSW 5 150,985,956 (GRCm39) missense probably benign
R9387:Stard13 UTSW 5 151,113,483 (GRCm39) missense probably benign 0.27
R9586:Stard13 UTSW 5 150,985,832 (GRCm39) missense possibly damaging 0.90
R9708:Stard13 UTSW 5 150,986,961 (GRCm39) missense possibly damaging 0.82
R9771:Stard13 UTSW 5 150,983,048 (GRCm39) missense probably damaging 1.00
Z1177:Stard13 UTSW 5 150,986,799 (GRCm39) missense probably benign 0.18
Predicted Primers PCR Primer
(F):5'- CGCTTAATGTCCTGGGCTTT -3'
(R):5'- AACTATGGCTCCACAAGGAAGAT -3'

Sequencing Primer
(F):5'- CCCTTCCTAATTAGTAAATTGCTGG -3'
(R):5'- TATGGCTCCACAAGGAAGATAACCC -3'
Posted On 2017-08-16