Mutagenetix > Incidental Mutation

Incidental Mutation 'R6134:Lypd11'

487276

Institutional Source

Beutler Lab

Gene Symbol

Lypd11

Ensembl Gene

ENSMUSG00000058717

Gene Name

Ly6/PLAUR domain containing 11

Synonyms

Gm4763

MMRRC Submission

044281-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.060) question?

Stock #

R6134 (G1)

Quality Score

141.008

Status

Not validated

Chromosome

Chromosomal Location

24414456-24426333 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 24425481 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Valine at position 3 (A3V)

Ref Sequence

ENSEMBL: ENSMUSP00000145595 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081657] [ENSMUST00000205376]

AlphaFold

Q8CFJ5

Predicted Effect

probably benign
Transcript: ENSMUST00000081657

SMART Domains

Protein: ENSMUSP00000080361
Gene: ENSMUSG00000058717

Domain	Start	End	E-Value	Type
low complexity region	24	35	N/A	INTRINSIC
Pfam:UPAR_LY6	88	165	1.2e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000205376
AA Change: A3V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206243

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206419

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.4%
20x: 95.6%

Validation Efficiency

94% (51/54)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2810021J22Rik	G	A	11: 58,767,619 (GRCm39)	E39K	probably damaging	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Aktip	T	A	8: 91,856,388 (GRCm39)	S30C	probably damaging	Het
Anxa10	G	T	8: 62,530,977 (GRCm39)	H78N	probably damaging	Het
Aoah	C	T	13: 21,095,293 (GRCm39)	R196W	probably damaging	Het
Arl4c	A	T	1: 88,629,152 (GRCm39)	W79R	probably damaging	Het
Brd2	A	T	17: 34,332,669 (GRCm39)	D178E	probably benign	Het
Cacna1e	G	A	1: 154,577,037 (GRCm39)	P120L	probably damaging	Het
Cdh16	A	T	8: 105,342,697 (GRCm39)	M17K	probably benign	Het
Cdhr17	A	T	5: 17,029,683 (GRCm39)	D473V	probably damaging	Het
Chit1	A	G	1: 134,071,798 (GRCm39)	T103A	possibly damaging	Het
Clcn3	T	C	8: 61,387,607 (GRCm39)	Y214C	probably damaging	Het
Coch	T	A	12: 51,649,536 (GRCm39)	D282E	probably damaging	Het
Col1a2	C	A	6: 4,538,035 (GRCm39)	S1181R	unknown	Het
Col6a2	T	C	10: 76,442,978 (GRCm39)	D506G	probably damaging	Het
Crx	A	T	7: 15,602,032 (GRCm39)	Y215*	probably null	Het
Fasn	A	T	11: 120,713,012 (GRCm39)	S58T	probably benign	Het
Fhip1a	T	C	3: 85,580,651 (GRCm39)	E518G	possibly damaging	Het
Garem1	A	T	18: 21,262,881 (GRCm39)	D644E	probably benign	Het
H2-Q2	A	C	17: 35,562,217 (GRCm39)	T155P	probably damaging	Het
Insr	A	T	8: 3,242,572 (GRCm39)	I49N	probably damaging	Het
Itgb4	C	T	11: 115,874,983 (GRCm39)	R447W	probably benign	Het
Lnpep	A	G	17: 17,773,454 (GRCm39)	M639T	probably benign	Het
Map3k20	C	T	2: 72,240,503 (GRCm39)	S333F	probably damaging	Het
Miga2	A	G	2: 30,261,229 (GRCm39)	S175G	probably benign	Het
Muc3a	A	T	5: 137,244,579 (GRCm39)	I191N	probably damaging	Het
Ncoa2	A	G	1: 13,244,595 (GRCm39)	V701A	probably damaging	Het
Nid2	T	C	14: 19,828,851 (GRCm39)	V565A	probably damaging	Het
Nova2	G	A	7: 18,691,794 (GRCm39)	A244T	unknown	Het
Numbl	G	C	7: 26,980,739 (GRCm39)	A574P	probably damaging	Het
Oas3	A	G	5: 120,907,113 (GRCm39)	V508A	unknown	Het
Or8b36	ATTGCTGTTT	ATTGCTGTTTGCTGTTT	9: 37,937,836 (GRCm39)		probably null	Het
Otx1	A	T	11: 21,949,406 (GRCm39)	L24H	probably damaging	Het
Pcdhb21	T	A	18: 37,647,461 (GRCm39)	S197T	probably benign	Het
Pck2	T	A	14: 55,781,419 (GRCm39)	M180K	probably damaging	Het
Pgr	T	C	9: 8,900,740 (GRCm39)	V91A	possibly damaging	Het
Phtf1	A	T	3: 103,911,721 (GRCm39)	M643L	probably damaging	Het
Prokr1	T	C	6: 87,565,837 (GRCm39)	T3A	possibly damaging	Het
Ptgs1	T	C	2: 36,141,190 (GRCm39)	Y546H	probably damaging	Het
Rasa1	A	G	13: 85,374,745 (GRCm39)	L742P	probably benign	Het
Rbbp6	T	C	7: 122,596,534 (GRCm39)		probably null	Het
Rgs22	A	G	15: 36,107,194 (GRCm39)	L64P	probably damaging	Het
Rnf213	A	T	11: 119,302,296 (GRCm39)	I407F	probably damaging	Het
Rp1l1	C	T	14: 64,267,545 (GRCm39)	P1044S	probably damaging	Het
Scin	G	A	12: 40,110,578 (GRCm39)	P690L	probably damaging	Het
Septin9	T	C	11: 117,242,987 (GRCm39)	L58P	probably damaging	Het
Slc1a7	A	G	4: 107,869,633 (GRCm39)	E566G	probably damaging	Het
Speer4f1	G	A	5: 17,681,140 (GRCm39)	R6Q	probably benign	Het
Tnxb	A	T	17: 34,890,986 (GRCm39)	Y443F	probably damaging	Het
Trpv1	A	G	11: 73,135,143 (GRCm39)	I79V	probably benign	Het
Ttll6	C	T	11: 96,030,568 (GRCm39)	T245I	possibly damaging	Het
Vmn2r26	T	C	6: 124,038,444 (GRCm39)	I673T	probably damaging	Het
Zfp60	T	C	7: 27,449,323 (GRCm39)	F664L	probably benign	Het

Other mutations in Lypd11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00840:Lypd11	APN	7	24,422,931 (GRCm39)	missense	probably damaging	0.99
IGL02953:Lypd11	APN	7	24,422,991 (GRCm39)	missense	probably damaging	1.00
IGL03349:Lypd11	APN	7	24,422,261 (GRCm39)	missense	probably damaging	0.99
R0144:Lypd11	UTSW	7	24,423,015 (GRCm39)	missense	possibly damaging	0.85
R0485:Lypd11	UTSW	7	24,422,170 (GRCm39)	missense	possibly damaging	0.84
R0652:Lypd11	UTSW	7	24,423,622 (GRCm39)	missense	possibly damaging	0.96
R0899:Lypd11	UTSW	7	24,422,737 (GRCm39)	missense	probably benign	0.00
R0963:Lypd11	UTSW	7	24,423,047 (GRCm39)	missense	probably benign	0.00
R5290:Lypd11	UTSW	7	24,422,836 (GRCm39)	missense	probably benign	0.04
R7128:Lypd11	UTSW	7	24,425,424 (GRCm39)	critical splice donor site	probably null
R7191:Lypd11	UTSW	7	24,422,759 (GRCm39)	missense	possibly damaging	0.88
R9061:Lypd11	UTSW	7	24,422,173 (GRCm39)	missense	possibly damaging	0.96
X0062:Lypd11	UTSW	7	24,422,724 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGCCTTTGCACAGAGTTCC -3'
(R):5'- GGCCTTGCTTGAGAAGATTCG -3'

Sequencing Primer
(F):5'- AGAGTTCCCTCCTCCCACGAC -3'
(R):5'- GGATCTGAATTCCTGACTAAGGC -3'

Posted On

2017-10-10