Mutagenetix > Incidental Mutations

Incidental Mutation 'R6128:Glt1d1'

487503

Institutional Source

Beutler Lab

Gene Symbol

Glt1d1

Ensembl Gene

ENSMUSG00000049971

Gene Name

glycosyltransferase 1 domain containing 1

Synonyms

5730455A04Rik

MMRRC Submission

044275-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.058) question?

Stock #

R6128 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

127632262-127709374 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 127677271 bp

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Valine at position 179 (D179V)

Ref Sequence

ENSEMBL: ENSMUSP00000113864 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000118139]

Predicted Effect

probably damaging
Transcript: ENSMUST00000118139
AA Change: D179V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000113864
Gene: ENSMUSG00000049971
AA Change: D179V

Domain	Start	End	E-Value	Type
Pfam:Glycos_transf_1	153	319	8.2e-23	PFAM
Pfam:Glyco_trans_1_4	166	305	8.7e-15	PFAM
Pfam:Glyco_trans_1_2	244	335	8.6e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134529

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137157

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 95.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930553M12Rik	T	C	4: 88,868,359	I7M	unknown	Het
4931408C20Rik	G	A	1: 26,685,425	P225S	probably benign	Het
A430033K04Rik	A	G	5: 138,647,776	H641R	probably damaging	Het
Acyp2	C	T	11: 30,506,354	E98K	possibly damaging	Het
AI464131	T	A	4: 41,498,445	N395I	probably damaging	Het
Asah1	C	T	8: 41,354,055	V111M	probably damaging	Het
Ascc3	T	C	10: 50,650,638	L611P	probably damaging	Het
Atl2	C	A	17: 79,865,041		probably null	Het
Bhlhe22	A	T	3: 18,055,823	S346C	probably damaging	Het
Bicc1	T	C	10: 70,940,483		probably null	Het
Bptf	G	T	11: 107,074,690	A1163D	possibly damaging	Het
Bub1b	T	A	2: 118,617,812	C382S	probably benign	Het
Carmil1	A	T	13: 24,013,194	Y158*	probably null	Het
Ccdc175	A	T	12: 72,129,159	I473K	probably benign	Het
Ccdc18	A	G	5: 108,163,759	I444V	possibly damaging	Het
Cep131	T	A	11: 120,065,975	I880F	probably damaging	Het
Ces2e	T	A	8: 104,928,796	I117N	probably benign	Het
Clk2	C	T	3: 89,174,224	T289M	probably damaging	Het
Crocc2	A	T	1: 93,194,401	D672V	probably benign	Het
Cul7	T	A	17: 46,651,662	I73N	probably damaging	Het
Cyp2d12	C	A	15: 82,558,965	D358E	probably benign	Het
Cyp7a1	A	G	4: 6,272,788	S142P	possibly damaging	Het
Daw1	T	A	1: 83,205,926	C232*	probably null	Het
Dhx9	T	C	1: 153,478,089	K195R	probably damaging	Het
Dnase1l1	C	T	X: 74,277,038		probably null	Het
Dpp3	A	G	19: 4,922,392	V168A	probably benign	Het
Eml2	G	A	7: 19,201,163	V432I	probably damaging	Het
Ercc6l2	T	C	13: 63,853,749	V459A	probably damaging	Het
Erp44	A	T	4: 48,243,493	N38K	probably damaging	Het
Fam135a	A	G	1: 24,030,740		probably null	Het
Fblim1	G	A	4: 141,584,722	R231C	probably damaging	Het
Fdps	T	C	3: 89,099,433	E117G	possibly damaging	Het
Gbp4	A	C	5: 105,135,164	V80G	possibly damaging	Het
Gtf2a1l	T	A	17: 88,694,658	V314E	probably null	Het
Gzmf	G	T	14: 56,205,986	Y178*	probably null	Het
Hira	C	T	16: 18,932,977	P509S	probably benign	Het
Ifi44	T	C	3: 151,749,186	N134S	probably benign	Het
Igfbp2	T	A	1: 72,824,799	C74S	probably damaging	Het
Il24	A	G	1: 130,885,698	L54P	probably damaging	Het
Ints10	T	C	8: 68,822,252		probably null	Het
Ipo9	A	G	1: 135,390,573	C700R	possibly damaging	Het
Kalrn	T	A	16: 34,212,885	Q469L	probably damaging	Het
Lrp1b	T	G	2: 40,860,655	I2966L	probably benign	Het
Lta	C	A	17: 35,203,841	V169L	possibly damaging	Het
Lyst	T	C	13: 13,759,379	V3554A	possibly damaging	Het
Mobp	A	G	9: 120,168,326		probably benign	Het
Olfr32	A	T	2: 90,138,610	C176*	probably null	Het
Olfr892-ps1	T	C	9: 38,190,003	S93P	probably benign	Het
Olfr959	C	G	9: 39,573,253	R2T	probably benign	Het
Pacs1	A	T	19: 5,152,372		probably null	Het
Phf21a	G	T	2: 92,351,608		probably null	Het
Pick1	T	A	15: 79,239,696	M89K	probably damaging	Het
Pik3cb	T	C	9: 99,064,099	D558G	possibly damaging	Het
Pnmal1	A	G	7: 16,960,736	D172G	probably benign	Het
Polr2a	A	C	11: 69,736,977	V1368G	probably damaging	Het
Pomt2	A	G	12: 87,111,335		probably null	Het
Pou2f1	T	C	1: 165,875,487		probably benign	Het
Rnf145	T	C	11: 44,555,191	V284A	probably damaging	Het
Robo1	A	T	16: 73,013,068	M1235L	probably benign	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,579,904		probably benign	Het
Ryr3	C	T	2: 112,954,294		probably null	Het
Scamp1	A	C	13: 94,208,227	L202R	possibly damaging	Het
Snx25	C	T	8: 46,105,203	V110I	probably benign	Het
Susd6	T	A	12: 80,868,614	H124Q	possibly damaging	Het
Tarm1	T	C	7: 3,489,204	T248A	probably benign	Het
Tc2n	A	G	12: 101,709,489	M1T	probably null	Het
Tcerg1	C	A	18: 42,511,498		probably null	Het
Ticrr	C	A	7: 79,693,968	P1194T	probably damaging	Het
Trim31	T	G	17: 36,909,599	V469G	probably benign	Het
Vcp	T	C	4: 42,980,941	E723G	probably benign	Het
Vmn1r177	C	A	7: 23,865,842	S203I	probably damaging	Het
Vmn1r177	T	A	7: 23,865,843	S203C	probably damaging	Het
Vmn1r210	A	T	13: 22,828,107	L3*	probably null	Het
Wdr27	T	A	17: 14,932,534	R104*	probably null	Het
Wnk1	A	C	6: 119,963,786		probably null	Het
Zfp157	A	G	5: 138,455,019	E88G	possibly damaging	Het
Zfp708	A	T	13: 67,074,901	L22Q	probably damaging	Het
Zfp788	T	C	7: 41,650,361	F787S	probably damaging	Het

Other mutations in Glt1d1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00156:Glt1d1	APN	5	127632285	start codon destroyed	probably null	1.00
IGL01310:Glt1d1	APN	5	127632320	missense	possibly damaging	0.86
IGL01608:Glt1d1	APN	5	127664682	missense	possibly damaging	0.56
IGL01738:Glt1d1	APN	5	127632355	intron	probably benign
IGL02028:Glt1d1	APN	5	127706920	missense	possibly damaging	0.63
IGL02273:Glt1d1	APN	5	127657144	splice site	probably benign
IGL02603:Glt1d1	APN	5	127632345	missense	probably damaging	1.00
IGL02718:Glt1d1	APN	5	127650699	missense	probably damaging	0.98
IGL02850:Glt1d1	APN	5	127644345	missense	probably benign	0.00
IGL03328:Glt1d1	APN	5	127657119	missense	probably benign
R0049:Glt1d1	UTSW	5	127663327	splice site	probably benign
R0312:Glt1d1	UTSW	5	127691070	missense	probably damaging	1.00
R0400:Glt1d1	UTSW	5	127657075	splice site	probably benign
R1838:Glt1d1	UTSW	5	127678129	missense	probably benign	0.01
R2060:Glt1d1	UTSW	5	127657119	missense	probably benign
R2262:Glt1d1	UTSW	5	127657112	missense	probably benign	0.08
R3776:Glt1d1	UTSW	5	127694311	missense	probably damaging	1.00
R4205:Glt1d1	UTSW	5	127689871	missense	probably benign	0.32
R4249:Glt1d1	UTSW	5	127691112	critical splice donor site	probably null
R4379:Glt1d1	UTSW	5	127694282	missense	possibly damaging	0.73
R5044:Glt1d1	UTSW	5	127644414	missense	probably benign	0.38
R5289:Glt1d1	UTSW	5	127644356	missense	probably benign	0.11
R5374:Glt1d1	UTSW	5	127657084	splice site	probably null
R5533:Glt1d1	UTSW	5	127691031	missense	probably damaging	1.00
R5592:Glt1d1	UTSW	5	127657119	missense	probably benign	0.01
R5870:Glt1d1	UTSW	5	127677280	missense	probably damaging	1.00
R5942:Glt1d1	UTSW	5	127644470	splice site	probably null
R6349:Glt1d1	UTSW	5	127706886	missense	probably benign	0.10
R6490:Glt1d1	UTSW	5	127644296	splice site	probably null
R6502:Glt1d1	UTSW	5	127706981	missense	probably damaging	1.00
R8205:Glt1d1	UTSW	5	127691016	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- TAGAGATCACACTAGGGGCG -3'
(R):5'- TGATCATCTAGGAACAGTCTGC -3'

Sequencing Primer
(F):5'- TCACACTAGGGGCGGGAAG -3'
(R):5'- TAAAGTCCCACTGGGCATG -3'

Posted On

2017-10-10