Mutagenetix > Incidental Mutations

Incidental Mutation 'R6128:Snx25'

487515

Institutional Source

Beutler Lab

Gene Symbol

Snx25

Ensembl Gene

ENSMUSG00000038291

Gene Name

sorting nexin 25

Synonyms

LOC382008, SBBI31

MMRRC Submission

044275-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R6128 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

46033261-46152159 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 46105203 bp

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 110 (V110I)

Ref Sequence

ENSEMBL: ENSMUSP00000106006 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041582] [ENSMUST00000110377] [ENSMUST00000110378] [ENSMUST00000170416]

Predicted Effect

probably benign
Transcript: ENSMUST00000041582
AA Change: V110I

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000035785
Gene: ENSMUSG00000038291
AA Change: V110I

Domain	Start	End	E-Value	Type
Pfam:PXA	1	163	9e-32	PFAM
RGS	287	401	6.62e-10	SMART
low complexity region	421	438	N/A	INTRINSIC
PX	512	624	1.38e-10	SMART
low complexity region	658	663	N/A	INTRINSIC
low complexity region	664	676	N/A	INTRINSIC
Pfam:Nexin_C	701	808	1.7e-35	PFAM
low complexity region	812	828	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110377
AA Change: V110I

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000106006
Gene: ENSMUSG00000038291
AA Change: V110I

Domain	Start	End	E-Value	Type
Pfam:PXA	1	138	5.8e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000110378
AA Change: V256I

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000106007
Gene: ENSMUSG00000038291
AA Change: V256I

Domain	Start	End	E-Value	Type
low complexity region	17	31	N/A	INTRINSIC
transmembrane domain	44	66	N/A	INTRINSIC
transmembrane domain	78	100	N/A	INTRINSIC
Pfam:PXA	145	306	8.7e-30	PFAM
RGS	433	547	6.62e-10	SMART
low complexity region	567	584	N/A	INTRINSIC
PX	658	770	1.38e-10	SMART
low complexity region	804	809	N/A	INTRINSIC
low complexity region	810	822	N/A	INTRINSIC
Pfam:Nexin_C	847	953	1e-28	PFAM
low complexity region	958	974	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150645

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000158004

Predicted Effect

probably benign
Transcript: ENSMUST00000170416
AA Change: V110I

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000127640
Gene: ENSMUSG00000038291
AA Change: V110I

Domain	Start	End	E-Value	Type
Pfam:PXA	1	163	9e-32	PFAM
RGS	287	401	6.62e-10	SMART
low complexity region	421	438	N/A	INTRINSIC
PX	512	624	1.38e-10	SMART
low complexity region	658	663	N/A	INTRINSIC
low complexity region	664	676	N/A	INTRINSIC
Pfam:Nexin_C	701	808	1.7e-35	PFAM
low complexity region	812	828	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176410

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 95.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930553M12Rik	T	C	4: 88,868,359	I7M	unknown	Het
4931408C20Rik	G	A	1: 26,685,425	P225S	probably benign	Het
A430033K04Rik	A	G	5: 138,647,776	H641R	probably damaging	Het
Acyp2	C	T	11: 30,506,354	E98K	possibly damaging	Het
AI464131	T	A	4: 41,498,445	N395I	probably damaging	Het
Asah1	C	T	8: 41,354,055	V111M	probably damaging	Het
Ascc3	T	C	10: 50,650,638	L611P	probably damaging	Het
Atl2	C	A	17: 79,865,041		probably null	Het
Bhlhe22	A	T	3: 18,055,823	S346C	probably damaging	Het
Bicc1	T	C	10: 70,940,483		probably null	Het
Bptf	G	T	11: 107,074,690	A1163D	possibly damaging	Het
Bub1b	T	A	2: 118,617,812	C382S	probably benign	Het
Carmil1	A	T	13: 24,013,194	Y158*	probably null	Het
Ccdc175	A	T	12: 72,129,159	I473K	probably benign	Het
Ccdc18	A	G	5: 108,163,759	I444V	possibly damaging	Het
Cep131	T	A	11: 120,065,975	I880F	probably damaging	Het
Ces2e	T	A	8: 104,928,796	I117N	probably benign	Het
Clk2	C	T	3: 89,174,224	T289M	probably damaging	Het
Crocc2	A	T	1: 93,194,401	D672V	probably benign	Het
Cul7	T	A	17: 46,651,662	I73N	probably damaging	Het
Cyp2d12	C	A	15: 82,558,965	D358E	probably benign	Het
Cyp7a1	A	G	4: 6,272,788	S142P	possibly damaging	Het
Daw1	T	A	1: 83,205,926	C232*	probably null	Het
Dhx9	T	C	1: 153,478,089	K195R	probably damaging	Het
Dnase1l1	C	T	X: 74,277,038		probably null	Het
Dpp3	A	G	19: 4,922,392	V168A	probably benign	Het
Eml2	G	A	7: 19,201,163	V432I	probably damaging	Het
Ercc6l2	T	C	13: 63,853,749	V459A	probably damaging	Het
Erp44	A	T	4: 48,243,493	N38K	probably damaging	Het
Fam135a	A	G	1: 24,030,740		probably null	Het
Fblim1	G	A	4: 141,584,722	R231C	probably damaging	Het
Fdps	T	C	3: 89,099,433	E117G	possibly damaging	Het
Gbp4	A	C	5: 105,135,164	V80G	possibly damaging	Het
Glt1d1	A	T	5: 127,677,271	D179V	probably damaging	Het
Gtf2a1l	T	A	17: 88,694,658	V314E	probably null	Het
Gzmf	G	T	14: 56,205,986	Y178*	probably null	Het
Hira	C	T	16: 18,932,977	P509S	probably benign	Het
Ifi44	T	C	3: 151,749,186	N134S	probably benign	Het
Igfbp2	T	A	1: 72,824,799	C74S	probably damaging	Het
Il24	A	G	1: 130,885,698	L54P	probably damaging	Het
Ints10	T	C	8: 68,822,252		probably null	Het
Ipo9	A	G	1: 135,390,573	C700R	possibly damaging	Het
Kalrn	T	A	16: 34,212,885	Q469L	probably damaging	Het
Lrp1b	T	G	2: 40,860,655	I2966L	probably benign	Het
Lta	C	A	17: 35,203,841	V169L	possibly damaging	Het
Lyst	T	C	13: 13,759,379	V3554A	possibly damaging	Het
Mobp	A	G	9: 120,168,326		probably benign	Het
Olfr32	A	T	2: 90,138,610	C176*	probably null	Het
Olfr892-ps1	T	C	9: 38,190,003	S93P	probably benign	Het
Olfr959	C	G	9: 39,573,253	R2T	probably benign	Het
Pacs1	A	T	19: 5,152,372		probably null	Het
Phf21a	G	T	2: 92,351,608		probably null	Het
Pick1	T	A	15: 79,239,696	M89K	probably damaging	Het
Pik3cb	T	C	9: 99,064,099	D558G	possibly damaging	Het
Pnmal1	A	G	7: 16,960,736	D172G	probably benign	Het
Polr2a	A	C	11: 69,736,977	V1368G	probably damaging	Het
Pomt2	A	G	12: 87,111,335		probably null	Het
Pou2f1	T	C	1: 165,875,487		probably benign	Het
Rnf145	T	C	11: 44,555,191	V284A	probably damaging	Het
Robo1	A	T	16: 73,013,068	M1235L	probably benign	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,579,904		probably benign	Het
Ryr3	C	T	2: 112,954,294		probably null	Het
Scamp1	A	C	13: 94,208,227	L202R	possibly damaging	Het
Susd6	T	A	12: 80,868,614	H124Q	possibly damaging	Het
Tarm1	T	C	7: 3,489,204	T248A	probably benign	Het
Tc2n	A	G	12: 101,709,489	M1T	probably null	Het
Tcerg1	C	A	18: 42,511,498		probably null	Het
Ticrr	C	A	7: 79,693,968	P1194T	probably damaging	Het
Trim31	T	G	17: 36,909,599	V469G	probably benign	Het
Vcp	T	C	4: 42,980,941	E723G	probably benign	Het
Vmn1r177	C	A	7: 23,865,842	S203I	probably damaging	Het
Vmn1r177	T	A	7: 23,865,843	S203C	probably damaging	Het
Vmn1r210	A	T	13: 22,828,107	L3*	probably null	Het
Wdr27	T	A	17: 14,932,534	R104*	probably null	Het
Wnk1	A	C	6: 119,963,786		probably null	Het
Zfp157	A	G	5: 138,455,019	E88G	possibly damaging	Het
Zfp708	A	T	13: 67,074,901	L22Q	probably damaging	Het
Zfp788	T	C	7: 41,650,361	F787S	probably damaging	Het

Other mutations in Snx25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00885:Snx25	APN	8	46038476	missense	probably damaging	1.00
IGL01432:Snx25	APN	8	46105160	missense	probably damaging	0.96
IGL01600:Snx25	APN	8	46116310	missense	probably benign	0.00
IGL02150:Snx25	APN	8	46116281	missense	possibly damaging	0.89
IGL02386:Snx25	APN	8	46041349	missense	possibly damaging	0.93
IGL02691:Snx25	APN	8	46105265	missense	possibly damaging	0.88
IGL03338:Snx25	APN	8	46045210	missense	probably benign	0.04
IGL03377:Snx25	APN	8	46080301	unclassified	probably benign
duo	UTSW	8	46124082	start codon destroyed	probably null	0.88
R0047:Snx25	UTSW	8	46041365	missense	probably damaging	0.99
R0047:Snx25	UTSW	8	46041365	missense	probably damaging	0.99
R0048:Snx25	UTSW	8	46105109	splice site	probably benign
R0048:Snx25	UTSW	8	46105109	splice site	probably benign
R0056:Snx25	UTSW	8	46038513	missense	probably damaging	1.00
R0546:Snx25	UTSW	8	46103630	missense	probably benign	0.00
R0791:Snx25	UTSW	8	46124082	start codon destroyed	probably null	0.88
R1165:Snx25	UTSW	8	46035715	missense	probably damaging	0.99
R1255:Snx25	UTSW	8	46116238	missense	probably benign	0.13
R1262:Snx25	UTSW	8	46105291	missense	probably damaging	0.98
R1522:Snx25	UTSW	8	46124082	start codon destroyed	probably null	0.88
R1652:Snx25	UTSW	8	46049473	missense	probably damaging	0.99
R1710:Snx25	UTSW	8	46116207	missense	possibly damaging	0.69
R1829:Snx25	UTSW	8	46035632	missense	possibly damaging	0.82
R2090:Snx25	UTSW	8	46056113	missense	probably damaging	1.00
R2158:Snx25	UTSW	8	46041407	missense	probably damaging	1.00
R2906:Snx25	UTSW	8	46049523	intron	probably null
R4244:Snx25	UTSW	8	46105254	missense	probably damaging	0.98
R4394:Snx25	UTSW	8	46035678	missense	probably damaging	1.00
R4465:Snx25	UTSW	8	46068229	missense	possibly damaging	0.78
R4586:Snx25	UTSW	8	46116437	intron	probably benign
R4663:Snx25	UTSW	8	46035579	missense	probably damaging	1.00
R4961:Snx25	UTSW	8	46068192	missense	probably damaging	0.99
R5104:Snx25	UTSW	8	46068166	makesense	probably null
R5634:Snx25	UTSW	8	46041391	missense	possibly damaging	0.94
R6344:Snx25	UTSW	8	46035638	nonsense	probably null
R6382:Snx25	UTSW	8	46055991	missense	probably benign
R6523:Snx25	UTSW	8	46055855	missense	probably damaging	0.96
R6798:Snx25	UTSW	8	46033773	missense	probably damaging	0.98
R7143:Snx25	UTSW	8	46035715	missense	possibly damaging	0.92
R7147:Snx25	UTSW	8	46105196	missense	probably damaging	0.98
R7519:Snx25	UTSW	8	46116272	missense	probably damaging	1.00
R7723:Snx25	UTSW	8	46038479	missense	probably damaging	1.00
RF002:Snx25	UTSW	8	46116181	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CACATGATCTGCAATATACAGGATCTG -3'
(R):5'- CAATTTGGGTCTGTCACTGGGC -3'

Sequencing Primer
(F):5'- GCAATATACAGGATCTGCACAAATG -3'
(R):5'- CCTTCAGTTCTTTTAGACAGGAAC -3'

Posted On

2017-10-10