Incidental Mutation 'R6183:Lmod3'
ID 487622
Institutional Source Beutler Lab
Gene Symbol Lmod3
Ensembl Gene ENSMUSG00000044086
Gene Name leiomodin 3 (fetal)
Synonyms 5430424A14Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.096) question?
Stock # R6183 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 97238534-97252759 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 97252553 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 7 (N7D)
Ref Sequence ENSEMBL: ENSMUSP00000093315 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000095655]
AlphaFold E9QA62
Predicted Effect probably damaging
Transcript: ENSMUST00000095655
AA Change: N7D

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000093315
Gene: ENSMUSG00000044086
AA Change: N7D

Pfam:Tropomodulin 8 177 1.2e-13 PFAM
PDB:1IO0|A 248 406 9e-46 PDB
SCOP:d1a4ya_ 261 358 1e-3 SMART
low complexity region 407 427 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.9%
  • 20x: 94.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the leiomodin family of proteins. This protein contains three actin-binding domains, a tropomyosin domain, a leucine-rich repeat domain, and a Wiskott-Aldrich syndrome protein homology 2 domain (WH2). Localization of this protein to the pointed ends of thin filaments has been observed, and there is evidence that this protein acts as a catalyst of actin nucleation, and is important to the organization of sarcomeric thin filaments in skeletal muscles. Mutations in this gene have been associated as one cause of Nemaline myopathy, as other genes have also been linked to this disorder. Nemaline myopathy is a disorder characterized by nonprogressive generalized muscle weakness and protein inclusions (nemaline bodies) in skeletal myofibers. Patients with mutations in this gene often present with a severe congenital form of the disorder. [provided by RefSeq, Jan 2015]
PHENOTYPE: Mice homozygous for an endonuclease-mediated mutation are runted and exhibit nemaline myopathy including a reduction in skeletal myofiber size, centrally nucleated skeletal muscle fibers, increase in skeletal muscle glycogen levels, and abnormal sarcomere and Z lines. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930548H24Rik T C 5: 31,487,976 (GRCm38) Y358H probably damaging Het
5830411N06Rik A G 7: 140,296,034 (GRCm38) T404A possibly damaging Het
Abcb4 T A 5: 8,918,718 (GRCm38) D352E probably benign Het
Adgrb3 T A 1: 25,094,370 (GRCm38) I972L probably damaging Het
Alg3 T C 16: 20,610,641 (GRCm38) Y33C probably benign Het
Atp1a3 C T 7: 24,981,752 (GRCm38) G816D probably damaging Het
Ces1g C T 8: 93,331,239 (GRCm38) V145M possibly damaging Het
Clip1 A G 5: 123,642,604 (GRCm38) S339P probably damaging Het
Col2a1 G T 15: 97,988,790 (GRCm38) T378N unknown Het
Dnah12 T A 14: 26,861,769 (GRCm38) L3207Q probably damaging Het
Efcab5 T C 11: 77,137,258 (GRCm38) T416A probably benign Het
Ephb1 A T 9: 102,195,325 (GRCm38) I85N probably damaging Het
Etnppl T C 3: 130,620,317 (GRCm38) C22R probably damaging Het
F830016B08Rik A G 18: 60,299,877 (GRCm38) T11A probably benign Het
Gm5458 C A 14: 19,599,644 (GRCm38) V171L probably damaging Het
Helb G T 10: 120,112,998 (GRCm38) probably null Het
Hnrnpll A G 17: 80,049,876 (GRCm38) V237A possibly damaging Het
Hps3 T C 3: 20,008,868 (GRCm38) T712A probably benign Het
Ibsp A G 5: 104,306,030 (GRCm38) E78G possibly damaging Het
Ighv1-62-2 G A 12: 115,446,436 (GRCm38) A111V probably damaging Het
Igkv4-63 G T 6: 69,378,124 (GRCm38) Q58K probably damaging Het
Iqcg T C 16: 33,030,923 (GRCm38) Y226C probably damaging Het
Khdc1a A T 1: 21,350,108 (GRCm38) D30V possibly damaging Het
Krtap5-5 C A 7: 142,229,787 (GRCm38) C42F unknown Het
Lvrn A G 18: 46,850,685 (GRCm38) N165S probably benign Het
Ms4a4c A G 19: 11,426,229 (GRCm38) T192A possibly damaging Het
Ncald A T 15: 37,397,232 (GRCm38) V68D probably damaging Het
Olfr1507 T A 14: 52,490,731 (GRCm38) T78S probably benign Het
Pcdhgb7 A T 18: 37,752,262 (GRCm38) I162F probably damaging Het
Prokr1 T C 6: 87,588,852 (GRCm38) T4A possibly damaging Het
Qrich2 T A 11: 116,458,129 (GRCm38) probably benign Het
Rgl1 C T 1: 152,586,570 (GRCm38) E60K possibly damaging Het
Rtn1 A T 12: 72,408,491 (GRCm38) W21R probably benign Het
Spast A G 17: 74,373,358 (GRCm38) I438M probably damaging Het
Sptbn5 C T 2: 120,059,417 (GRCm38) probably benign Het
Sry C G Y: 2,662,975 (GRCm38) Q228H unknown Het
Tas1r1 A G 4: 152,032,541 (GRCm38) I212T probably damaging Het
Tbc1d1 A G 5: 64,275,425 (GRCm38) N439D probably damaging Het
Tjp2 C T 19: 24,100,791 (GRCm38) A913T probably damaging Het
Tnfrsf26 A G 7: 143,611,757 (GRCm38) L47P probably damaging Het
Unc13a A T 8: 71,644,666 (GRCm38) S1195T probably damaging Het
Usp54 T C 14: 20,552,245 (GRCm38) R1346G probably damaging Het
Vmn1r54 T A 6: 90,269,290 (GRCm38) M62K possibly damaging Het
Vmn2r125 A T 4: 156,350,069 (GRCm38) D50V probably damaging Het
Vmn2r66 T C 7: 84,995,558 (GRCm38) D548G possibly damaging Het
Vmn2r95 T A 17: 18,443,930 (GRCm38) N470K probably damaging Het
Zc3h7a A T 16: 11,147,370 (GRCm38) I633N possibly damaging Het
Other mutations in Lmod3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00427:Lmod3 APN 6 97,252,297 (GRCm38) missense probably damaging 0.99
IGL00465:Lmod3 APN 6 97,247,861 (GRCm38) missense probably damaging 1.00
IGL01401:Lmod3 APN 6 97,252,552 (GRCm38) missense probably damaging 1.00
IGL02279:Lmod3 APN 6 97,247,672 (GRCm38) missense probably damaging 1.00
IGL02621:Lmod3 APN 6 97,238,835 (GRCm38) utr 3 prime probably benign
IGL03116:Lmod3 APN 6 97,247,195 (GRCm38) missense possibly damaging 0.92
Runted UTSW 6 97,247,273 (GRCm38) missense probably damaging 1.00
R0086:Lmod3 UTSW 6 97,247,345 (GRCm38) missense probably damaging 1.00
R0627:Lmod3 UTSW 6 97,248,071 (GRCm38) missense probably damaging 0.96
R2208:Lmod3 UTSW 6 97,247,877 (GRCm38) missense probably benign 0.06
R4038:Lmod3 UTSW 6 97,248,314 (GRCm38) missense probably benign 0.06
R4913:Lmod3 UTSW 6 97,247,164 (GRCm38) splice site probably null
R5867:Lmod3 UTSW 6 97,248,002 (GRCm38) missense probably damaging 1.00
R5905:Lmod3 UTSW 6 97,247,614 (GRCm38) missense probably damaging 1.00
R6035:Lmod3 UTSW 6 97,247,273 (GRCm38) missense probably damaging 1.00
R6035:Lmod3 UTSW 6 97,247,273 (GRCm38) missense probably damaging 1.00
R6210:Lmod3 UTSW 6 97,247,301 (GRCm38) missense probably damaging 1.00
R6527:Lmod3 UTSW 6 97,247,378 (GRCm38) missense probably benign 0.00
R7225:Lmod3 UTSW 6 97,247,384 (GRCm38) missense probably benign 0.34
R7531:Lmod3 UTSW 6 97,248,442 (GRCm38) missense probably benign 0.01
R7908:Lmod3 UTSW 6 97,248,473 (GRCm38) missense probably benign 0.05
R8022:Lmod3 UTSW 6 97,248,299 (GRCm38) missense probably benign
R8154:Lmod3 UTSW 6 97,247,980 (GRCm38) missense probably damaging 1.00
R8325:Lmod3 UTSW 6 97,247,418 (GRCm38) missense probably benign 0.06
R9149:Lmod3 UTSW 6 97,247,664 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer

Sequencing Primer
Posted On 2017-10-10