Mutagenetix > Incidental Mutation

Incidental Mutation 'R0524:Vmn1r72'

48778

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r72

Ensembl Gene

ENSMUSG00000095430

Gene Name

vomeronasal 1 receptor 72

Synonyms

V1rg1

MMRRC Submission

038717-MU

Accession Numbers

Genbank: NM_145843; MGI: 2182256

Essential gene?

Probably non essential (E-score: 0.060) question?

Stock #

R0524 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

11664479-11680147 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 11669792 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 243 (F243S)

Ref Sequence

ENSEMBL: ENSMUSP00000154511 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053134] [ENSMUST00000209638] [ENSMUST00000227010]

AlphaFold

Q8K3N7

Predicted Effect

probably benign
Transcript: ENSMUST00000053134
AA Change: F243S

PolyPhen 2 Score 0.317 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000052997
Gene: ENSMUSG00000095430
AA Change: F243S

Domain	Start	End	E-Value	Type
Pfam:TAS2R	1	305	1.8e-9	PFAM
Pfam:V1R	25	300	6.7e-26	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000209638
AA Change: F243S

PolyPhen 2 Score 0.317 (Sensitivity: 0.90; Specificity: 0.89)

Predicted Effect

probably benign
Transcript: ENSMUST00000227010
AA Change: F243S

PolyPhen 2 Score 0.317 (Sensitivity: 0.90; Specificity: 0.89)

Coding Region Coverage

1x: 99.5%
3x: 98.7%
10x: 96.4%
20x: 92.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acbd3	CGAGGAGGAGGAGGAGGA	CGAGGAGGAGGAGGA	1: 180,747,059		probably benign	Het
Adamts16	T	C	13: 70,800,894	E216G	probably benign	Het
Aoc3	C	A	11: 101,337,511	P715T	probably damaging	Het
Bnipl	T	C	3: 95,249,829	D33G	probably benign	Het
Celsr2	T	C	3: 108,401,587	H1701R	probably damaging	Het
Clca3b	T	A	3: 144,825,321	H756L	probably benign	Het
Clca4a	A	G	3: 144,969,393	W159R	probably damaging	Het
Ddx49	A	T	8: 70,296,924	I252N	probably damaging	Het
Duox2	T	C	2: 122,281,836	T1290A	possibly damaging	Het
Fam111a	T	A	19: 12,588,048	I431K	probably damaging	Het
Fam135b	A	T	15: 71,462,284	D1020E	probably benign	Het
Flii	A	G	11: 60,720,061	V514A	probably damaging	Het
Frmpd1	G	A	4: 45,256,902	V157M	probably damaging	Het
Frmpd1	A	G	4: 45,283,774	D865G	probably benign	Het
Gm6970	T	A	19: 47,170,494	K214M	unknown	Het
Gsr	G	A	8: 33,669,180		probably null	Het
Hps3	A	T	3: 20,012,776	V542E	probably damaging	Het
Kcnj5	A	G	9: 32,322,974	I15T	probably benign	Het
Kif2b	T	C	11: 91,575,724	R578G	probably benign	Het
Lamb2	A	G	9: 108,484,372	R676G	possibly damaging	Het
Mrpl40	A	G	16: 18,873,552	F94S	possibly damaging	Het
Myo7b	C	T	18: 32,013,424	V103M	possibly damaging	Het
Nmt2	T	A	2: 3,305,437	W69R	probably benign	Het
Nsd3	C	A	8: 25,700,577	Q1130K	possibly damaging	Het
Olfml1	T	C	7: 107,590,177	S150P	probably damaging	Het
Olfr123	A	T	17: 37,795,605	K54*	probably null	Het
Olfr1471	A	G	19: 13,445,864	N284S	probably damaging	Het
Pask	A	T	1: 93,310,834	W1310R	probably damaging	Het
Pcdh18	T	C	3: 49,755,642	Q408R	probably damaging	Het
Pfkm	A	G	15: 98,131,607	I700V	probably benign	Het
Pias1	A	G	9: 62,952,178	V16A	probably damaging	Het
Pnpla8	C	T	12: 44,283,618	Q318*	probably null	Het
Ppp1cc	C	T	5: 122,172,770	R142*	probably null	Het
Pygl	T	A	12: 70,207,724	N149I	probably damaging	Het
Rapgef6	T	A	11: 54,690,284	S1285T	probably benign	Het
Rdh13	A	C	7: 4,444,297	C10W	probably damaging	Het
Rgr	A	T	14: 37,038,295	C273S	probably benign	Het
Ripk4	G	T	16: 97,755,287	Y22*	probably null	Het
Slc34a2	G	A	5: 53,064,873	W302*	probably null	Het
Smarce1	G	A	11: 99,214,062	T263M	probably damaging	Het
Sypl	C	T	12: 32,967,565	P94L	possibly damaging	Het
Tet3	A	G	6: 83,379,942	I878T	probably damaging	Het
Tmem232	A	G	17: 65,485,942	S87P	probably damaging	Het
Tmem260	A	G	14: 48,472,478	T163A	probably benign	Het
Ttn	T	C	2: 76,725,452	Y30403C	probably damaging	Het
Ubash3b	A	T	9: 41,016,608	M468K	probably benign	Het
Ulk4	A	G	9: 121,252,651		probably null	Het
Wrap73	A	G	4: 154,145,307	Y45C	probably damaging	Het
Zfp704	T	C	3: 9,609,364	D119G	unknown	Het
Zfp719	A	G	7: 43,589,253		probably null	Het

Other mutations in Vmn1r72

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00885:Vmn1r72	APN	7	11670497	missense	probably benign	0.41
IGL02375:Vmn1r72	APN	7	11669745	missense	probably benign	0.10
IGL02809:Vmn1r72	APN	7	11670003	missense	probably benign	0.03
IGL03104:Vmn1r72	APN	7	11669885	missense	probably damaging	1.00
3-1:Vmn1r72	UTSW	7	11669898	missense	probably damaging	0.97
IGL03014:Vmn1r72	UTSW	7	11669784	missense	possibly damaging	0.80
R0346:Vmn1r72	UTSW	7	11669694	missense	probably benign
R1951:Vmn1r72	UTSW	7	11669804	missense	probably damaging	1.00
R1953:Vmn1r72	UTSW	7	11669804	missense	probably damaging	1.00
R2181:Vmn1r72	UTSW	7	11669668	nonsense	probably null
R4182:Vmn1r72	UTSW	7	11670068	missense	probably benign	0.00
R4345:Vmn1r72	UTSW	7	11670036	missense	possibly damaging	0.86
R4496:Vmn1r72	UTSW	7	11669864	missense	probably damaging	1.00
R4999:Vmn1r72	UTSW	7	11670373	missense	possibly damaging	0.63
R5401:Vmn1r72	UTSW	7	11669916	missense	probably damaging	1.00
R5700:Vmn1r72	UTSW	7	11670423	missense	probably damaging	0.98
R5754:Vmn1r72	UTSW	7	11669849	missense	probably damaging	0.99
R6292:Vmn1r72	UTSW	7	11669652	missense	probably benign	0.02
R6439:Vmn1r72	UTSW	7	11679137	splice site	probably null
R7616:Vmn1r72	UTSW	7	11670345	missense	probably damaging	0.96
R7629:Vmn1r72	UTSW	7	11669784	missense	probably benign
R7737:Vmn1r72	UTSW	7	11669707	missense	probably damaging	0.98
R7819:Vmn1r72	UTSW	7	11669625	missense	probably benign	0.01
R8358:Vmn1r72	UTSW	7	11670383	missense	probably damaging	0.99
R8797:Vmn1r72	UTSW	7	11670038	missense	probably benign
R8848:Vmn1r72	UTSW	7	11670342	missense	probably damaging	0.98
R8947:Vmn1r72	UTSW	7	11669880	missense	possibly damaging	0.89
R9010:Vmn1r72	UTSW	7	11670218	missense	possibly damaging	0.89
R9165:Vmn1r72	UTSW	7	11679024	intron	probably benign
R9578:Vmn1r72	UTSW	7	11670420	missense	probably benign	0.10
X0063:Vmn1r72	UTSW	7	11669712	missense	probably benign	0.00
Z1088:Vmn1r72	UTSW	7	11670173	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- AGCCTGGAAATGGGCTTCATATTGC -3'
(R):5'- AGAGCACTTGACCTTTGCCAACTG -3'

Sequencing Primer
(F):5'- GGCTTCATATTGCTGAGAAGAAC -3'
(R):5'- TGTTAGGCCCCAGTTACAAG -3'

Posted On

2013-06-12