Mutagenetix > Incidental Mutation

Incidental Mutation 'R6137:Mettl13'

488386

Institutional Source

Beutler Lab

Gene Symbol

Mettl13

Ensembl Gene

ENSMUSG00000026694

Gene Name

methyltransferase like 13

Synonyms

5630401D24Rik

MMRRC Submission

044284-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.201) question?

Stock #

R6137 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

162532127-162548551 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 162535886 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 225 (D225G)

Ref Sequence

ENSEMBL: ENSMUSP00000135879 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028017] [ENSMUST00000159316] [ENSMUST00000159817] [ENSMUST00000176220]

AlphaFold

Q91YR5

Predicted Effect

probably benign
Transcript: ENSMUST00000028017
AA Change: D593G

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000028017
Gene: ENSMUSG00000026694
AA Change: D593G

Domain	Start	End	E-Value	Type
Pfam:TPMT	13	172	1e-7	PFAM
Pfam:Ubie_methyltran	38	190	6.6e-7	PFAM
Pfam:Methyltransf_31	46	198	5.3e-13	PFAM
Pfam:Methyltransf_18	48	161	1.1e-10	PFAM
Pfam:Methyltransf_25	52	154	3.7e-9	PFAM
Pfam:Methyltransf_11	53	158	4.1e-16	PFAM
low complexity region	436	452	N/A	INTRINSIC
Pfam:Spermine_synth	472	630	7.4e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159316

SMART Domains

Protein: ENSMUSP00000135822
Gene: ENSMUSG00000026694

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_25	1	101	2.7e-10	PFAM
Pfam:Methyltransf_18	1	102	8e-11	PFAM
Pfam:Methyltransf_31	1	149	1.9e-12	PFAM
Pfam:Methyltransf_11	2	100	1.5e-14	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000159817

SMART Domains

Protein: ENSMUSP00000124267
Gene: ENSMUSG00000026694

Domain	Start	End	E-Value	Type
Pfam:TPMT	13	144	4.6e-8	PFAM
Pfam:Methyltransf_31	46	195	3.5e-12	PFAM
Pfam:Methyltransf_18	48	160	5e-11	PFAM
Pfam:Methyltransf_25	52	154	1.1e-9	PFAM
Pfam:Methyltransf_11	53	158	6e-14	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176220
AA Change: D225G

PolyPhen 2 Score 0.092 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000135879
Gene: ENSMUSG00000026694
AA Change: D225G

Domain	Start	End	E-Value	Type
Pfam:Spermine_synth	73	239	1.8e-8	PFAM
Pfam:Methyltransf_18	126	234	1.3e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176689

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.8%
20x: 93.3%

Validation Efficiency

98% (58/59)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700092M07Rik	A	T	19: 8,740,784	D6V	probably damaging	Het
2310057M21Rik	G	T	7: 131,357,613	H165Q	probably damaging	Het
Akap13	T	A	7: 75,677,416	F721Y	probably damaging	Het
Akap6	A	T	12: 53,140,354	D1517V	probably damaging	Het
Amigo3	T	A	9: 108,053,728	S117T	probably damaging	Het
Atf7ip2	T	A	16: 10,201,411	N34K	probably damaging	Het
Cacnb1	A	C	11: 98,005,782	V351G	probably damaging	Het
Casp9	T	A	4: 141,805,349		probably null	Het
Ccdc51	C	T	9: 109,089,415	T24I	probably benign	Het
Cdh23	T	A	10: 60,434,512	Y618F	probably damaging	Het
Chd1	T	A	17: 15,758,688	W1271R	probably damaging	Het
Dars	T	C	1: 128,368,439	T386A	probably benign	Het
Dchs1	T	A	7: 105,765,106	D834V	probably damaging	Het
Dgkd	T	A	1: 87,936,381	V933E	possibly damaging	Het
Dnah17	A	G	11: 118,025,654	F4203S	probably damaging	Het
Fancm	T	C	12: 65,130,382	L2000P	probably damaging	Het
Fbxo11	A	T	17: 88,008,669	H444Q	probably benign	Het
Fbxw14	T	A	9: 109,276,222	T292S	probably damaging	Het
Fer1l6	T	C	15: 58,559,206	S237P	probably damaging	Het
Frem3	T	C	8: 80,615,047	I1323T	probably benign	Het
Grin2a	A	G	16: 9,653,449	F652L	probably benign	Het
Grin2b	T	A	6: 135,923,458	M142L	possibly damaging	Het
Helz	A	G	11: 107,619,060	Q503R	possibly damaging	Het
Ighv5-17	A	G	12: 113,859,295	Y69H	probably benign	Het
Il17ra	A	G	6: 120,475,582	N242S	probably benign	Het
Immp1l	G	C	2: 105,964,208	G117A	probably damaging	Het
Itm2c	T	C	1: 85,894,692	V10A	probably benign	Het
Kif1b	T	C	4: 149,238,426	K679E	possibly damaging	Het
Kng1	T	C	16: 23,074,645	V256A	possibly damaging	Het
Lamc2	T	G	1: 153,166,153	R78S	possibly damaging	Het
Loxl4	A	G	19: 42,598,793	F621S	probably damaging	Het
Lpl	T	A	8: 68,892,747	D134E	probably damaging	Het
Lypd3	T	C	7: 24,640,494	Y329H	probably benign	Het
Myo7b	A	G	18: 31,999,974	F441L	probably damaging	Het
Nnt	T	A	13: 119,336,328	M699L	possibly damaging	Het
Nr1h3	A	T	2: 91,191,851	M144K	probably damaging	Het
Olfr1040	A	G	2: 86,145,969	V255A	probably benign	Het
Olfr1347	T	C	7: 6,488,845	T3A	probably benign	Het
Olfr325	A	T	11: 58,581,068	M75L	probably benign	Het
Pappa2	A	T	1: 158,871,543	Y667N	probably damaging	Het
Prps1l3	A	G	12: 57,238,888	I155V	probably benign	Het
Ptgs2	T	A	1: 150,100,993	N24K	probably benign	Het
Ralgds	A	T	2: 28,547,588	M514L	probably damaging	Het
Rbm47	G	C	5: 66,026,283	R326G	probably damaging	Het
Sacm1l	T	A	9: 123,569,005	V254D	probably damaging	Het
Selenot	A	T	3: 58,585,284	Q64L	probably damaging	Het
Sgsm2	G	A	11: 74,850,851	R1037W	probably damaging	Het
Slc22a12	A	G	19: 6,542,724	V10A	probably benign	Het
Spem2	G	T	11: 69,816,696	S481*	probably null	Het
Styk1	C	T	6: 131,311,016	G128D	probably damaging	Het
Tmc6	A	T	11: 117,776,328	L148Q	probably damaging	Het
Tmem138	A	C	19: 10,574,835		probably null	Het
Tnpo3	A	G	6: 29,555,268	V772A	probably benign	Het
Topaz1	T	C	9: 122,797,756	F1483S	possibly damaging	Het
Tuba4a	C	A	1: 75,216,055	C305F	probably damaging	Het
Ubap1	T	G	4: 41,379,262	F159V	possibly damaging	Het
Vmn2r9	A	G	5: 108,849,016	I129T	probably benign	Het
Wwc2	A	T	8: 47,856,263	M828K	unknown	Het
Zfp236	A	T	18: 82,671,794	S187T	possibly damaging	Het

Other mutations in Mettl13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00229:Mettl13	APN	1	162535865	missense	possibly damaging	0.74
IGL00589:Mettl13	APN	1	162542391	missense	probably damaging	1.00
IGL01765:Mettl13	APN	1	162538953	missense	probably benign
IGL02200:Mettl13	APN	1	162538823	intron	probably benign
IGL02835:Mettl13	UTSW	1	162546016	missense	probably damaging	0.97
R0055:Mettl13	UTSW	1	162546181	missense	probably damaging	1.00
R0322:Mettl13	UTSW	1	162544176	splice site	probably benign
R0390:Mettl13	UTSW	1	162538889	missense	possibly damaging	0.51
R0423:Mettl13	UTSW	1	162544385	missense	probably damaging	1.00
R0723:Mettl13	UTSW	1	162534430	missense	probably damaging	1.00
R1472:Mettl13	UTSW	1	162537167	missense	possibly damaging	0.95
R2429:Mettl13	UTSW	1	162546325	nonsense	probably null
R3755:Mettl13	UTSW	1	162544220	missense	probably damaging	0.97
R3756:Mettl13	UTSW	1	162544220	missense	probably damaging	0.97
R4058:Mettl13	UTSW	1	162546186	missense	probably damaging	1.00
R4059:Mettl13	UTSW	1	162546186	missense	probably damaging	1.00
R4087:Mettl13	UTSW	1	162548202	missense	possibly damaging	0.53
R4885:Mettl13	UTSW	1	162537268	missense	probably damaging	0.99
R4974:Mettl13	UTSW	1	162537220	missense	probably damaging	0.99
R5070:Mettl13	UTSW	1	162545899	missense	possibly damaging	0.47
R5447:Mettl13	UTSW	1	162535880	missense	probably benign	0.01
R5702:Mettl13	UTSW	1	162545980	missense	probably benign	0.00
R6570:Mettl13	UTSW	1	162544286	missense	probably damaging	0.99
R6754:Mettl13	UTSW	1	162548123	missense	probably damaging	1.00
R7340:Mettl13	UTSW	1	162538978	missense	probably benign	0.00
R7386:Mettl13	UTSW	1	162548154	missense	probably damaging	1.00
R8397:Mettl13	UTSW	1	162544318	missense	possibly damaging	0.78
R8557:Mettl13	UTSW	1	162544352	missense	possibly damaging	0.90
R8901:Mettl13	UTSW	1	162546245	missense	possibly damaging	0.51
R8905:Mettl13	UTSW	1	162537278	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGAAGAGAGCCTCAATTCCTTGC -3'
(R):5'- TCTTCAGCAGGCAGAGTACTC -3'

Sequencing Primer
(F):5'- CTTGCAGTCCTCTGAGATAGCAG -3'
(R):5'- GCAGAGTACTCACGTCGTCATC -3'

Posted On

2017-10-10