Mutagenetix > Incidental Mutation

Incidental Mutation 'R6156:Tbx15'

489566

Institutional Source

Beutler Lab

Gene Symbol

Tbx15

Ensembl Gene

ENSMUSG00000027868

Gene Name

T-box 15

Synonyms

Tbx8, de, Tbx14

MMRRC Submission

044303-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.931) question?

Stock #

R6156 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

99147697-99261575 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

G to T at 99220431 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000142358 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029462] [ENSMUST00000150756] [ENSMUST00000151606]

AlphaFold

O70306

Predicted Effect

probably null
Transcript: ENSMUST00000029462

SMART Domains

Protein: ENSMUSP00000029462
Gene: ENSMUSG00000027868

Domain	Start	End	E-Value	Type
low complexity region	2	17	N/A	INTRINSIC
TBOX	112	309	8.05e-131	SMART
Blast:TBOX	310	482	8e-83	BLAST
low complexity region	486	492	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000150756

SMART Domains

Protein: ENSMUSP00000142358
Gene: ENSMUSG00000027868

Domain	Start	End	E-Value	Type
TBOX	6	142	2.4e-72	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000151606

SMART Domains

Protein: ENSMUSP00000143417
Gene: ENSMUSG00000027868

Domain	Start	End	E-Value	Type
Pfam:T-box	8	51	1.1e-17	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.9%

Validation Efficiency

97% (68/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the T-box family of genes, which encode a phylogenetically conserved family of transcription factors that regulate a variety of developmental processes. All these genes contain a common T-box DNA-binding domain. Mutations in this gene are associated with Cousin syndrome.[provided by RefSeq, Oct 2009]
PHENOTYPE: Homozygous mutants have low set ears that project laterally, skeletal abnormalities and distinctive dorsoventral coat color patterning. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy8	T	G	15: 64,689,488 (GRCm39)		probably null	Het
Ank2	T	C	3: 126,737,886 (GRCm39)	D2579G	probably damaging	Het
Atp6v1b1	G	C	6: 83,735,115 (GRCm39)	G423R	probably damaging	Het
B4galnt3	T	C	6: 120,191,801 (GRCm39)	N644S	probably benign	Het
Bhmt1b	C	A	18: 87,775,231 (GRCm39)	Y251*	probably null	Het
Capsl	T	G	15: 9,465,920 (GRCm39)	M132R	probably damaging	Het
Cep120	A	G	18: 53,836,295 (GRCm39)	Y797H	probably benign	Het
Cimip4	T	C	15: 78,263,013 (GRCm39)	T214A	probably damaging	Het
Clec2e	T	A	6: 129,072,061 (GRCm39)	D106V	possibly damaging	Het
Col6a2	C	T	10: 76,440,004 (GRCm39)	V634I	possibly damaging	Het
Dis3	T	C	14: 99,336,215 (GRCm39)	E97G	probably benign	Het
Dlec1	T	C	9: 118,939,281 (GRCm39)		probably null	Het
Dock2	C	A	11: 34,197,789 (GRCm39)	V1484F	possibly damaging	Het
Ephb2	T	A	4: 136,388,816 (GRCm39)	M593L	probably benign	Het
Fcgrt	T	C	7: 44,751,484 (GRCm39)	T125A	probably benign	Het
Gabbr1	T	C	17: 37,359,319 (GRCm39)	I98T	probably benign	Het
Gbp10	G	A	5: 105,384,015 (GRCm39)		probably benign	Het
Gfod1	T	C	13: 43,354,514 (GRCm39)	S154G	possibly damaging	Het
Ggt5	C	T	10: 75,445,160 (GRCm39)	T389I	probably damaging	Het
Got2	A	G	8: 96,598,896 (GRCm39)	F169L	probably benign	Het
Gse1	A	G	8: 121,215,866 (GRCm39)	K5E	possibly damaging	Het
Hyal5	T	C	6: 24,891,437 (GRCm39)	I417T	possibly damaging	Het
Igkv4-91	G	T	6: 68,745,607 (GRCm39)	T97K	probably damaging	Het
Il4i1	T	C	7: 44,489,608 (GRCm39)	Y458H	possibly damaging	Het
Impg1	A	T	9: 80,230,106 (GRCm39)	C740S	probably damaging	Het
Itgb1	C	G	8: 129,458,535 (GRCm39)	T788R	possibly damaging	Het
Lman2l	A	G	1: 36,477,907 (GRCm39)	V143A	probably damaging	Het
Ltbp4	G	T	7: 27,029,587 (GRCm39)	T136K	unknown	Het
Macf1	A	G	4: 123,366,073 (GRCm39)	I1331T	probably benign	Het
Mmp11	G	A	10: 75,762,325 (GRCm39)	A336V	probably damaging	Het
Myh2	A	T	11: 67,071,879 (GRCm39)	I536F	probably damaging	Het
Myh4	A	G	11: 67,141,618 (GRCm39)	M826V	probably benign	Het
Naca	T	C	10: 127,875,160 (GRCm39)		probably benign	Het
Nr4a2	A	G	2: 57,002,364 (GRCm39)	Y30H	probably damaging	Het
Or12j4	A	G	7: 140,046,758 (GRCm39)	T215A	probably benign	Het
Or1e35	A	T	11: 73,797,447 (GRCm39)	Y290*	probably null	Het
Or2n1d	T	A	17: 38,646,064 (GRCm39)	N5K	probably damaging	Het
Or4a67	T	A	2: 88,597,934 (GRCm39)	I242L	probably benign	Het
Or4f14d	A	T	2: 111,960,445 (GRCm39)	L237Q	probably damaging	Het
Or4k42	A	T	2: 111,320,095 (GRCm39)	M136K	probably damaging	Het
Or4z4	A	G	19: 12,076,484 (GRCm39)	V173A	possibly damaging	Het
Or8g22	T	A	9: 38,958,671 (GRCm39)	M15L	possibly damaging	Het
Paqr3	A	C	5: 97,256,128 (GRCm39)	L82R	probably damaging	Het
Pex6	C	T	17: 47,031,567 (GRCm39)	P456S	probably benign	Het
Pih1d2	A	T	9: 50,532,452 (GRCm39)	K186I	possibly damaging	Het
Plekhh3	A	G	11: 101,061,013 (GRCm39)		probably benign	Het
Ptpn23	C	A	9: 110,216,849 (GRCm39)		probably benign	Het
Rcor3	T	A	1: 191,812,142 (GRCm39)		probably benign	Het
Rgs11	T	A	17: 26,429,439 (GRCm39)	Y403*	probably null	Het
Scn10a	T	C	9: 119,464,649 (GRCm39)	N984D	probably benign	Het
Snx14	C	T	9: 88,289,392 (GRCm39)	A287T	possibly damaging	Het
Stx3	T	C	19: 11,780,874 (GRCm39)	D33G	probably damaging	Het
Tacc2	A	G	7: 130,227,494 (GRCm39)	K1393R	probably damaging	Het
Tas2r129	T	C	6: 132,928,455 (GRCm39)	S131P	probably benign	Het
Thada	A	G	17: 84,700,795 (GRCm39)	V1237A	probably damaging	Het
Tnc	A	G	4: 63,888,589 (GRCm39)	Y1735H	probably damaging	Het
Ttc22	A	G	4: 106,495,780 (GRCm39)	K378R	probably benign	Het
Tubg2	A	G	11: 101,051,635 (GRCm39)	K287E	possibly damaging	Het
Ugt3a1	T	C	15: 9,310,762 (GRCm39)	I348T	possibly damaging	Het
Unc79	A	G	12: 103,027,717 (GRCm39)	N436S	probably damaging	Het
Unc80	A	T	1: 66,651,409 (GRCm39)	I1585F	probably benign	Het
Vmn2r104	T	C	17: 20,261,909 (GRCm39)	Y407C	probably damaging	Het
Vmn2r108	T	A	17: 20,692,447 (GRCm39)	L136F	probably benign	Het
Vmn2r38	A	G	7: 9,097,611 (GRCm39)	S161P	probably damaging	Het
Vmn2r90	T	C	17: 17,953,606 (GRCm39)	I590T	probably benign	Het
Washc5	T	C	15: 59,217,248 (GRCm39)	E323G	probably damaging	Het
Wdhd1	C	T	14: 47,505,653 (GRCm39)	G273D	probably damaging	Het
Xpo6	G	T	7: 125,708,016 (GRCm39)	Q851K	probably damaging	Het
Zfp386	T	C	12: 116,023,526 (GRCm39)	S380P	probably damaging	Het
Zfp536	A	G	7: 37,173,281 (GRCm39)	C274R	unknown	Het
Zfp64	A	G	2: 168,768,088 (GRCm39)	I508T	probably benign	Het

Other mutations in Tbx15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01024:Tbx15	APN	3	99,223,562 (GRCm39)	missense	probably damaging	1.00
IGL01458:Tbx15	APN	3	99,223,544 (GRCm39)	missense	probably damaging	0.98
IGL01633:Tbx15	APN	3	99,220,358 (GRCm39)	missense	probably damaging	0.97
IGL02338:Tbx15	APN	3	99,259,800 (GRCm39)	missense	probably damaging	1.00
IGL02415:Tbx15	APN	3	99,259,826 (GRCm39)	missense	probably benign	0.01
IGL03143:Tbx15	APN	3	99,259,514 (GRCm39)	missense	possibly damaging	0.67
IGL03201:Tbx15	APN	3	99,259,296 (GRCm39)	missense	probably benign	0.00
shin_guard	UTSW	3	99,259,508 (GRCm39)	missense	possibly damaging	0.90
Shortcut	UTSW	3	99,220,389 (GRCm39)	nonsense	probably null
R0012:Tbx15	UTSW	3	99,259,412 (GRCm39)	missense	probably benign
R0109:Tbx15	UTSW	3	99,259,182 (GRCm39)	missense	possibly damaging	0.92
R0277:Tbx15	UTSW	3	99,259,707 (GRCm39)	missense	probably damaging	1.00
R0462:Tbx15	UTSW	3	99,223,634 (GRCm39)	missense	probably damaging	1.00
R1134:Tbx15	UTSW	3	99,223,639 (GRCm39)	missense	probably damaging	0.98
R1347:Tbx15	UTSW	3	99,259,427 (GRCm39)	missense	possibly damaging	0.92
R1347:Tbx15	UTSW	3	99,259,427 (GRCm39)	missense	possibly damaging	0.92
R1506:Tbx15	UTSW	3	99,259,228 (GRCm39)	missense	possibly damaging	0.80
R1681:Tbx15	UTSW	3	99,259,140 (GRCm39)	splice site	probably null
R1762:Tbx15	UTSW	3	99,259,260 (GRCm39)	nonsense	probably null
R1789:Tbx15	UTSW	3	99,259,562 (GRCm39)	nonsense	probably null
R2167:Tbx15	UTSW	3	99,233,771 (GRCm39)	splice site	probably benign
R2254:Tbx15	UTSW	3	99,259,190 (GRCm39)	missense	possibly damaging	0.52
R2357:Tbx15	UTSW	3	99,223,672 (GRCm39)	splice site	probably null
R2441:Tbx15	UTSW	3	99,259,827 (GRCm39)	missense	probably damaging	0.99
R3010:Tbx15	UTSW	3	99,161,209 (GRCm39)	intron	probably benign
R3118:Tbx15	UTSW	3	99,259,470 (GRCm39)	missense	probably damaging	0.96
R4081:Tbx15	UTSW	3	99,220,370 (GRCm39)	missense	possibly damaging	0.92
R4610:Tbx15	UTSW	3	99,259,683 (GRCm39)	missense	probably damaging	1.00
R4898:Tbx15	UTSW	3	99,259,583 (GRCm39)	missense	possibly damaging	0.95
R4950:Tbx15	UTSW	3	99,233,700 (GRCm39)	missense	possibly damaging	0.82
R4982:Tbx15	UTSW	3	99,161,390 (GRCm39)	missense	probably benign	0.06
R4999:Tbx15	UTSW	3	99,223,649 (GRCm39)	missense	probably damaging	1.00
R5236:Tbx15	UTSW	3	99,259,362 (GRCm39)	missense	possibly damaging	0.92
R5339:Tbx15	UTSW	3	99,223,600 (GRCm39)	missense	possibly damaging	0.61
R5364:Tbx15	UTSW	3	99,259,508 (GRCm39)	missense	possibly damaging	0.90
R5493:Tbx15	UTSW	3	99,259,880 (GRCm39)	missense	probably benign
R5690:Tbx15	UTSW	3	99,216,166 (GRCm39)	missense	probably damaging	0.99
R5756:Tbx15	UTSW	3	99,220,402 (GRCm39)	missense	probably damaging	1.00
R6032:Tbx15	UTSW	3	99,259,833 (GRCm39)	missense	probably benign	0.28
R6032:Tbx15	UTSW	3	99,259,833 (GRCm39)	missense	probably benign	0.28
R6173:Tbx15	UTSW	3	99,161,203 (GRCm39)	nonsense	probably null
R6596:Tbx15	UTSW	3	99,259,508 (GRCm39)	missense	probably benign
R6680:Tbx15	UTSW	3	99,220,389 (GRCm39)	nonsense	probably null
R6931:Tbx15	UTSW	3	99,259,467 (GRCm39)	missense	probably damaging	1.00
R8129:Tbx15	UTSW	3	99,161,254 (GRCm39)	missense	probably damaging	1.00
R8155:Tbx15	UTSW	3	99,259,886 (GRCm39)	missense	possibly damaging	0.69
R8230:Tbx15	UTSW	3	99,259,305 (GRCm39)	missense	probably damaging	1.00
R8729:Tbx15	UTSW	3	99,220,376 (GRCm39)	missense	possibly damaging	0.90
R8929:Tbx15	UTSW	3	99,222,219 (GRCm39)	missense	probably damaging	1.00
R9038:Tbx15	UTSW	3	99,222,085 (GRCm39)	missense	probably benign	0.14
R9688:Tbx15	UTSW	3	99,233,708 (GRCm39)	missense	possibly damaging	0.89
R9746:Tbx15	UTSW	3	99,259,647 (GRCm39)	missense	probably damaging	1.00
X0023:Tbx15	UTSW	3	99,222,151 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GACACTCTAAGCTCCTACTCG -3'
(R):5'- AGCCACTTAGTATTTGCTCCTGTAG -3'

Sequencing Primer
(F):5'- ACTCTAAGCTCCTACTCGAGTTTAC -3'
(R):5'- ATTTGCTCCTGTAGGGACAC -3'

Posted On

2017-10-10