Incidental Mutation 'R6163:Blm'
ID 489970
Institutional Source Beutler Lab
Gene Symbol Blm
Ensembl Gene ENSMUSG00000030528
Gene Name Bloom syndrome, RecQ like helicase
Synonyms
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R6163 (G1)
Quality Score 102.467
Status Not validated
Chromosome 7
Chromosomal Location 80454733-80535119 bp(-) (GRCm38)
Type of Mutation small deletion (1 aa in frame mutation)
DNA Base Change (assembly) GCCTCCTCCTCCTCCTCCTCCTCCTCCTCC to GCCTCCTCCTCCTCCTCCTCCTCCTCC at 80512904 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000127995 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000081314] [ENSMUST00000170315]
AlphaFold O88700
Predicted Effect probably benign
Transcript: ENSMUST00000081314
SMART Domains Protein: ENSMUSP00000080062
Gene: ENSMUSG00000030528

DomainStartEndE-ValueType
low complexity region 46 54 N/A INTRINSIC
low complexity region 118 132 N/A INTRINSIC
low complexity region 142 169 N/A INTRINSIC
low complexity region 219 231 N/A INTRINSIC
low complexity region 318 335 N/A INTRINSIC
Pfam:BDHCT 376 416 5.5e-27 PFAM
low complexity region 557 574 N/A INTRINSIC
DEXDc 672 873 1.59e-29 SMART
HELICc 910 992 1.29e-24 SMART
RQC 1084 1198 1.43e-15 SMART
HRDC 1217 1297 9.4e-20 SMART
low complexity region 1357 1371 N/A INTRINSIC
low complexity region 1378 1392 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000166096
Predicted Effect probably benign
Transcript: ENSMUST00000170315
SMART Domains Protein: ENSMUSP00000127995
Gene: ENSMUSG00000030528

DomainStartEndE-ValueType
Pfam:BLM_N 4 375 1.1e-161 PFAM
Pfam:BDHCT 380 419 6.4e-25 PFAM
Pfam:BDHCT_assoc 433 658 8.8e-108 PFAM
DEXDc 675 876 1.59e-29 SMART
HELICc 913 995 1.29e-24 SMART
Pfam:RecQ_Zn_bind 1006 1078 1.5e-19 PFAM
RQC 1087 1201 1.43e-15 SMART
HRDC 1220 1300 9.4e-20 SMART
low complexity region 1360 1374 N/A INTRINSIC
low complexity region 1381 1395 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205263
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.0%
  • 20x: 94.5%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The Bloom syndrome gene product is related to the RecQ subset of DExH box-containing DNA helicases and has both DNA-stimulated ATPase and ATP-dependent DNA helicase activities. Mutations causing Bloom syndrome delete or alter helicase motifs and may disable the 3'-5' helicase activity. The normal protein may act to suppress inappropriate recombination. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants are developmentally delayed, with increased apopotosis in the epiblast and severe anemia, dying at embyronic day 13.5; but homozygotes for a cre mediated recombinant allele are viable Bloom syndrome-like mice prone to a wide variety of cancers and showing increased rates of LOH. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700018F24Rik C T 5: 145,045,288 (GRCm38) Q228* probably null Het
4922502D21Rik C T 6: 129,326,747 (GRCm38) R85H probably benign Het
Asic5 A G 3: 82,006,526 (GRCm38) N169S probably damaging Het
Atad2b T A 12: 4,954,593 (GRCm38) L374H probably benign Het
BC080695 A G 4: 143,572,035 (GRCm38) K183E probably damaging Het
Birc2 G A 9: 7,819,035 (GRCm38) T544I probably benign Het
Cc2d2b C T 19: 40,756,506 (GRCm38) T23I probably benign Het
Ccdc137 G T 11: 120,460,101 (GRCm38) R108L possibly damaging Het
Cenpe T C 3: 135,269,003 (GRCm38) I2308T probably damaging Het
Cpt1b T C 15: 89,424,417 (GRCm38) T103A probably benign Het
Cpvl C A 6: 53,873,518 (GRCm38) V445F probably damaging Het
Cttnbp2 A G 6: 18,434,951 (GRCm38) S303P possibly damaging Het
Cyp17a1 T A 19: 46,669,322 (GRCm38) I264F possibly damaging Het
Cyp51 T A 5: 4,100,199 (GRCm38) I175F probably damaging Het
Dennd4c C T 4: 86,805,591 (GRCm38) P695S possibly damaging Het
Dlgap2 A T 8: 14,846,641 (GRCm38) Q1039L probably damaging Het
Dnah14 T C 1: 181,666,361 (GRCm38) L1694P probably benign Het
Dnah2 G A 11: 69,520,903 (GRCm38) Q298* probably null Het
Dsg2 G T 18: 20,598,669 (GRCm38) probably null Het
Esr2 A C 12: 76,121,869 (GRCm38) V522G probably damaging Het
Fmo9 T A 1: 166,667,393 (GRCm38) H262L probably benign Het
Glb1l T A 1: 75,201,407 (GRCm38) M373L probably benign Het
Gls A G 1: 52,215,576 (GRCm38) S247P probably benign Het
Gm37240 T A 3: 84,515,785 (GRCm38) E213D probably damaging Het
Gmip T A 8: 69,817,372 (GRCm38) V675E probably benign Het
Grb10 C A 11: 11,943,932 (GRCm38) E330* probably null Het
Hist1h2ai A T 13: 21,716,689 (GRCm38) N90Y probably damaging Het
Hivep2 A G 10: 14,129,992 (GRCm38) K778R probably damaging Het
Ighv1-26 T C 12: 114,788,796 (GRCm38) S4G probably benign Het
Igkv3-3 T A 6: 70,687,273 (GRCm38) V33E possibly damaging Het
Itga2 C A 13: 114,866,190 (GRCm38) G588V probably damaging Het
Itpr1 C T 6: 108,388,284 (GRCm38) H58Y probably damaging Het
Jmjd1c T A 10: 67,248,048 (GRCm38) D2365E possibly damaging Het
Limk1 T C 5: 134,657,955 (GRCm38) Y518C probably damaging Het
March6 G C 15: 31,465,351 (GRCm38) H802Q probably benign Het
Mark2 A G 19: 7,290,761 (GRCm38) S26P probably benign Het
Mdn1 T A 4: 32,716,040 (GRCm38) L2074Q probably damaging Het
Mrpl37 T C 4: 107,064,596 (GRCm38) E174G possibly damaging Het
Mtcl1 T C 17: 66,379,331 (GRCm38) H860R probably benign Het
Neurod1 A G 2: 79,454,161 (GRCm38) F293L probably benign Het
Nwd1 C T 8: 72,662,186 (GRCm38) R81W probably damaging Het
Nwd2 C A 5: 63,805,788 (GRCm38) A905E probably benign Het
Olfr1375 T A 11: 51,048,768 (GRCm38) Y220* probably null Het
Olfr1445 A C 19: 12,884,108 (GRCm38) T76P probably damaging Het
Olfr307 A T 7: 86,336,384 (GRCm38) I4N possibly damaging Het
Olfr860 A G 9: 19,845,728 (GRCm38) I297T probably benign Het
Otop1 C A 5: 38,287,890 (GRCm38) probably null Het
Otp A G 13: 94,875,780 (GRCm38) H4R probably damaging Het
P4htm A C 9: 108,581,951 (GRCm38) Y261D probably damaging Het
Pcsk5 A T 19: 17,473,041 (GRCm38) C1148S probably damaging Het
Plekhg1 A T 10: 3,964,369 (GRCm38) R1419W probably damaging Het
Prkd3 C A 17: 78,966,355 (GRCm38) D491Y possibly damaging Het
Prr11 A C 11: 87,103,628 (GRCm38) L64R possibly damaging Het
Pygo1 G T 9: 72,944,698 (GRCm38) A56S probably damaging Het
Rexo5 A G 7: 119,805,247 (GRCm38) T189A probably damaging Het
Rnf213 A T 11: 119,458,428 (GRCm38) H3784L possibly damaging Het
Rps6ka5 T G 12: 100,595,920 (GRCm38) probably null Het
Slco2b1 T A 7: 99,688,899 (GRCm38) I93F probably damaging Het
Slfn8 T C 11: 83,003,864 (GRCm38) *408W probably null Het
Sptbn1 C A 11: 30,159,443 (GRCm38) E51* probably null Het
Ssc5d T A 7: 4,927,254 (GRCm38) H111Q probably damaging Het
Sult1c1 T C 17: 53,973,953 (GRCm38) N41D probably benign Het
Taar8c G A 10: 24,101,218 (GRCm38) T232I probably benign Het
Tdo2 T C 3: 81,975,403 (GRCm38) E2G possibly damaging Het
Tff2 T C 17: 31,144,178 (GRCm38) E24G probably benign Het
Tjp2 C A 19: 24,125,704 (GRCm38) probably null Het
Tnfrsf1b A T 4: 145,219,907 (GRCm38) D311E probably benign Het
Usp15 G T 10: 123,168,305 (GRCm38) N181K probably damaging Het
Vmn1r175 T G 7: 23,809,166 (GRCm38) E12A possibly damaging Het
Vmn1r47 T C 6: 90,022,791 (GRCm38) S302P probably damaging Het
Vmn2r58 A G 7: 41,837,401 (GRCm38) M690T probably benign Het
Wee1 T A 7: 110,135,651 (GRCm38) H465Q probably damaging Het
Zfr C T 15: 12,146,245 (GRCm38) A294V unknown Het
Other mutations in Blm
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01531:Blm APN 7 80,474,071 (GRCm38) missense probably damaging 1.00
IGL01658:Blm APN 7 80,463,941 (GRCm38) missense probably damaging 0.98
IGL02048:Blm APN 7 80,502,961 (GRCm38) splice site probably benign
IGL02060:Blm APN 7 80,514,580 (GRCm38) splice site probably benign
IGL02063:Blm APN 7 80,509,419 (GRCm38) nonsense probably null
IGL02102:Blm APN 7 80,469,756 (GRCm38) missense probably damaging 1.00
IGL02420:Blm APN 7 80,496,006 (GRCm38) missense probably damaging 1.00
IGL02452:Blm APN 7 80,503,377 (GRCm38) splice site probably null
IGL02566:Blm APN 7 80,474,196 (GRCm38) missense probably damaging 1.00
IGL03387:Blm APN 7 80,494,147 (GRCm38) missense probably damaging 1.00
FR4304:Blm UTSW 7 80,512,919 (GRCm38) small insertion probably benign
FR4304:Blm UTSW 7 80,463,773 (GRCm38) frame shift probably null
FR4340:Blm UTSW 7 80,512,910 (GRCm38) small insertion probably benign
FR4340:Blm UTSW 7 80,512,907 (GRCm38) small insertion probably benign
FR4340:Blm UTSW 7 80,463,767 (GRCm38) unclassified probably benign
FR4449:Blm UTSW 7 80,512,908 (GRCm38) small insertion probably benign
FR4548:Blm UTSW 7 80,463,769 (GRCm38) frame shift probably null
FR4589:Blm UTSW 7 80,463,770 (GRCm38) frame shift probably null
FR4737:Blm UTSW 7 80,463,774 (GRCm38) frame shift probably null
FR4737:Blm UTSW 7 80,463,771 (GRCm38) frame shift probably null
FR4976:Blm UTSW 7 80,512,907 (GRCm38) small insertion probably benign
FR4976:Blm UTSW 7 80,463,767 (GRCm38) unclassified probably benign
R0133:Blm UTSW 7 80,502,367 (GRCm38) missense possibly damaging 0.93
R0194:Blm UTSW 7 80,464,946 (GRCm38) unclassified probably benign
R0526:Blm UTSW 7 80,505,893 (GRCm38) nonsense probably null
R0673:Blm UTSW 7 80,499,751 (GRCm38) critical splice donor site probably null
R0972:Blm UTSW 7 80,513,370 (GRCm38) missense probably benign
R0980:Blm UTSW 7 80,499,958 (GRCm38) splice site probably null
R1120:Blm UTSW 7 80,481,466 (GRCm38) missense probably damaging 1.00
R1301:Blm UTSW 7 80,455,417 (GRCm38) nonsense probably null
R1769:Blm UTSW 7 80,513,370 (GRCm38) missense probably benign
R1866:Blm UTSW 7 80,494,114 (GRCm38) missense probably benign 0.08
R1874:Blm UTSW 7 80,497,418 (GRCm38) missense probably damaging 1.00
R1966:Blm UTSW 7 80,513,186 (GRCm38) missense possibly damaging 0.86
R1991:Blm UTSW 7 80,505,949 (GRCm38) splice site probably null
R2013:Blm UTSW 7 80,502,399 (GRCm38) missense probably damaging 0.99
R2014:Blm UTSW 7 80,502,399 (GRCm38) missense probably damaging 0.99
R2015:Blm UTSW 7 80,502,399 (GRCm38) missense probably damaging 0.99
R2016:Blm UTSW 7 80,505,926 (GRCm38) missense probably benign 0.26
R2103:Blm UTSW 7 80,505,949 (GRCm38) splice site probably null
R2161:Blm UTSW 7 80,481,370 (GRCm38) splice site probably null
R2215:Blm UTSW 7 80,499,847 (GRCm38) missense possibly damaging 0.69
R3689:Blm UTSW 7 80,513,079 (GRCm38) missense possibly damaging 0.56
R4049:Blm UTSW 7 80,502,862 (GRCm38) missense probably benign 0.04
R4155:Blm UTSW 7 80,512,904 (GRCm38) small deletion probably benign
R4695:Blm UTSW 7 80,494,228 (GRCm38) missense probably damaging 1.00
R4774:Blm UTSW 7 80,463,848 (GRCm38) missense probably damaging 1.00
R4833:Blm UTSW 7 80,466,826 (GRCm38) missense probably benign
R4835:Blm UTSW 7 80,509,546 (GRCm38) missense probably benign 0.41
R4994:Blm UTSW 7 80,458,825 (GRCm38) missense probably benign 0.00
R5039:Blm UTSW 7 80,505,873 (GRCm38) missense possibly damaging 0.50
R5330:Blm UTSW 7 80,458,936 (GRCm38) missense possibly damaging 0.73
R5375:Blm UTSW 7 80,513,229 (GRCm38) missense probably benign 0.00
R5408:Blm UTSW 7 80,502,622 (GRCm38) missense probably benign 0.01
R5574:Blm UTSW 7 80,499,773 (GRCm38) missense probably damaging 1.00
R5606:Blm UTSW 7 80,460,832 (GRCm38) splice site probably null
R5702:Blm UTSW 7 80,458,927 (GRCm38) missense probably benign 0.13
R5809:Blm UTSW 7 80,464,844 (GRCm38) missense probably damaging 1.00
R6114:Blm UTSW 7 80,513,487 (GRCm38) missense probably damaging 1.00
R6157:Blm UTSW 7 80,512,985 (GRCm38) missense probably benign 0.18
R6254:Blm UTSW 7 80,480,342 (GRCm38) missense probably benign 0.04
R6266:Blm UTSW 7 80,499,940 (GRCm38) missense probably benign 0.03
R6364:Blm UTSW 7 80,494,526 (GRCm38) nonsense probably null
R6446:Blm UTSW 7 80,512,904 (GRCm38) small deletion probably benign
R6502:Blm UTSW 7 80,481,475 (GRCm38) missense probably damaging 0.98
R6700:Blm UTSW 7 80,463,850 (GRCm38) missense possibly damaging 0.91
R7002:Blm UTSW 7 80,469,753 (GRCm38) missense probably benign 0.00
R7105:Blm UTSW 7 80,499,768 (GRCm38) missense probably benign 0.44
R7320:Blm UTSW 7 80,455,354 (GRCm38) nonsense probably null
R7465:Blm UTSW 7 80,513,115 (GRCm38) missense probably benign 0.02
R7561:Blm UTSW 7 80,502,528 (GRCm38) missense probably damaging 0.99
R8500:Blm UTSW 7 80,455,284 (GRCm38) missense probably damaging 1.00
R8543:Blm UTSW 7 80,494,216 (GRCm38) missense probably damaging 0.98
R8774-TAIL:Blm UTSW 7 80,512,907 (GRCm38) small insertion probably benign
R8774-TAIL:Blm UTSW 7 80,512,918 (GRCm38) small insertion probably benign
R8774-TAIL:Blm UTSW 7 80,512,919 (GRCm38) small insertion probably benign
R8775-TAIL:Blm UTSW 7 80,512,931 (GRCm38) small insertion probably benign
R8860:Blm UTSW 7 80,494,528 (GRCm38) missense probably benign 0.30
R8928:Blm UTSW 7 80,512,904 (GRCm38) small deletion probably benign
R9089:Blm UTSW 7 80,513,119 (GRCm38) missense probably damaging 1.00
R9363:Blm UTSW 7 80,458,915 (GRCm38) missense probably damaging 1.00
RF001:Blm UTSW 7 80,512,927 (GRCm38) small insertion probably benign
RF001:Blm UTSW 7 80,512,906 (GRCm38) small insertion probably benign
RF001:Blm UTSW 7 80,512,903 (GRCm38) small insertion probably benign
RF002:Blm UTSW 7 80,512,927 (GRCm38) small insertion probably benign
RF002:Blm UTSW 7 80,512,905 (GRCm38) small insertion probably benign
RF007:Blm UTSW 7 80,512,933 (GRCm38) nonsense probably null
RF016:Blm UTSW 7 80,512,926 (GRCm38) nonsense probably null
RF018:Blm UTSW 7 80,512,926 (GRCm38) nonsense probably null
RF027:Blm UTSW 7 80,512,914 (GRCm38) frame shift probably null
RF028:Blm UTSW 7 80,512,905 (GRCm38) nonsense probably null
RF031:Blm UTSW 7 80,512,923 (GRCm38) small insertion probably benign
RF031:Blm UTSW 7 80,512,906 (GRCm38) small insertion probably benign
RF032:Blm UTSW 7 80,512,930 (GRCm38) small insertion probably benign
RF036:Blm UTSW 7 80,512,914 (GRCm38) nonsense probably null
RF044:Blm UTSW 7 80,512,930 (GRCm38) small insertion probably benign
RF053:Blm UTSW 7 80,512,921 (GRCm38) small insertion probably benign
RF064:Blm UTSW 7 80,512,923 (GRCm38) nonsense probably null
X0061:Blm UTSW 7 80,458,850 (GRCm38) missense possibly damaging 0.89
Predicted Primers PCR Primer
(F):5'- AACTGTCCTGTGTACCGCTG -3'
(R):5'- AGATGCGTTTGCTTCACTGG -3'

Sequencing Primer
(F):5'- CCCAGTGCTCAGCTTTAGATTAG -3'
(R):5'- GCTTCACTGGCTAAAAATCCTG -3'
Posted On 2017-10-10