Incidental Mutation 'R0529:Fmn1'
| ID |
49034 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Fmn1
|
| Ensembl Gene |
ENSMUSG00000044042 |
| Gene Name |
formin 1 |
| Synonyms |
formin-1, Fmn |
| MMRRC Submission |
038721-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.292)
|
| Stock # |
R0529 (G1)
|
| Quality Score |
197 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
113158081-113547112 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to A
at 113538198 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000125052
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000081349]
[ENSMUST00000099576]
[ENSMUST00000102547]
[ENSMUST00000161731]
|
| AlphaFold |
Q05860 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000081349
|
| SMART Domains |
Protein: ENSMUSP00000080093
Gene: ENSMUSG00000044042
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:FH2
|
25 |
641 |
N/A |
BLAST |
|
SCOP:d1jvr__
|
668 |
699 |
2e-3 |
SMART |
|
FH2
|
757 |
1162 |
1.16e-137 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000099576
|
| SMART Domains |
Protein: ENSMUSP00000097171
Gene: ENSMUSG00000044042
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
159 |
173 |
N/A |
INTRINSIC |
|
Blast:FH2
|
352 |
861 |
N/A |
BLAST |
|
SCOP:d1jvr__
|
894 |
925 |
2e-3 |
SMART |
|
FH2
|
983 |
1388 |
1.16e-137 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000102547
|
| SMART Domains |
Protein: ENSMUSP00000099606
Gene: ENSMUSG00000044042
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
159 |
173 |
N/A |
INTRINSIC |
|
Blast:FH2
|
352 |
861 |
N/A |
BLAST |
|
SCOP:d1jvr__
|
894 |
925 |
2e-3 |
SMART |
|
FH2
|
983 |
1424 |
1.03e-134 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123377
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145891
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152255
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000153151
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000161731
|
| SMART Domains |
Protein: ENSMUSP00000125052
Gene: ENSMUSG00000044042
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
159 |
173 |
N/A |
INTRINSIC |
|
Blast:FH2
|
352 |
619 |
1e-62 |
BLAST |
|
Blast:FH2
|
625 |
765 |
3e-53 |
BLAST |
|
SCOP:d1jvr__
|
796 |
827 |
2e-3 |
SMART |
|
FH2
|
885 |
1290 |
1.16e-137 |
SMART |
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.4%
- 10x: 96.5%
- 20x: 93.3%
|
| Validation Efficiency |
97% (58/60) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the formin homology family and encodes a protein that has a role in the formation of adherens junction and the polymerization of linear actin cables. The homologous gene in mouse is associated with limb deformity. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2015]
PHENOTYPE: Homozygotes for spontaneous, irradiation-induced, and transgene-insertional mutations show severe syndactyly and oligodactyly of the feet, abnormal long bones (including radius-ulna fusions), and reduced or absent kidneys. Many mutants survive and breed. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 57 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700010I14Rik |
G |
A |
17: 9,211,228 (GRCm39) |
V126I |
probably benign |
Het |
| Aasdh |
A |
C |
5: 77,024,114 (GRCm39) |
Y179* |
probably null |
Het |
| Afp |
A |
G |
5: 90,652,254 (GRCm39) |
Y415C |
probably damaging |
Het |
| Aldh5a1 |
G |
T |
13: 25,097,856 (GRCm39) |
T393K |
probably benign |
Het |
| Arhgef26 |
T |
C |
3: 62,247,146 (GRCm39) |
S77P |
probably benign |
Het |
| Axl |
A |
G |
7: 25,486,712 (GRCm39) |
|
probably benign |
Het |
| Card10 |
A |
G |
15: 78,664,675 (GRCm39) |
|
probably null |
Het |
| Ccdc71l |
G |
A |
12: 32,429,251 (GRCm39) |
S90N |
probably damaging |
Het |
| Cebpa |
A |
T |
7: 34,819,624 (GRCm39) |
T261S |
probably benign |
Het |
| Cnmd |
T |
C |
14: 79,879,481 (GRCm39) |
E219G |
probably benign |
Het |
| Cntln |
T |
A |
4: 84,986,062 (GRCm39) |
L1010H |
probably damaging |
Het |
| Cul9 |
A |
G |
17: 46,831,394 (GRCm39) |
|
probably benign |
Het |
| Cyld |
A |
G |
8: 89,456,387 (GRCm39) |
E479G |
probably benign |
Het |
| Dmp1 |
A |
G |
5: 104,360,092 (GRCm39) |
E256G |
probably benign |
Het |
| Dnmt1 |
T |
C |
9: 20,822,846 (GRCm39) |
D1140G |
probably damaging |
Het |
| Drd2 |
A |
C |
9: 49,318,374 (GRCm39) |
M439L |
probably benign |
Het |
| Drd3 |
G |
A |
16: 43,643,077 (GRCm39) |
V438M |
probably damaging |
Het |
| Dyrk3 |
A |
G |
1: 131,057,858 (GRCm39) |
I70T |
probably benign |
Het |
| Fbxo38 |
T |
C |
18: 62,639,057 (GRCm39) |
K1082E |
probably damaging |
Het |
| Fbxw10 |
A |
C |
11: 62,750,671 (GRCm39) |
D428A |
probably damaging |
Het |
| Fmnl2 |
A |
T |
2: 52,932,377 (GRCm39) |
I119F |
probably damaging |
Het |
| Frmd4a |
A |
G |
2: 4,610,834 (GRCm39) |
T995A |
probably damaging |
Het |
| Gda |
T |
A |
19: 21,402,901 (GRCm39) |
I82F |
probably damaging |
Het |
| Gpatch4 |
T |
A |
3: 87,958,583 (GRCm39) |
H22Q |
probably damaging |
Het |
| Gpr55 |
A |
G |
1: 85,869,225 (GRCm39) |
F119L |
probably benign |
Het |
| Gtf2i |
A |
T |
5: 134,290,723 (GRCm39) |
L425* |
probably null |
Het |
| Knstrn |
T |
A |
2: 118,661,461 (GRCm39) |
|
probably benign |
Het |
| Lipo2 |
T |
A |
19: 33,724,335 (GRCm39) |
I144L |
probably benign |
Het |
| Lrp1 |
T |
C |
10: 127,377,463 (GRCm39) |
|
probably null |
Het |
| Mtmr14 |
T |
C |
6: 113,243,213 (GRCm39) |
|
probably benign |
Het |
| Nsmce4a |
A |
T |
7: 130,135,536 (GRCm39) |
S345R |
probably benign |
Het |
| Oacyl |
T |
A |
18: 65,875,290 (GRCm39) |
V385D |
probably damaging |
Het |
| Or6k8-ps1 |
G |
A |
1: 173,979,696 (GRCm39) |
A205T |
probably benign |
Het |
| Or8b52 |
A |
T |
9: 38,576,808 (GRCm39) |
C111S |
probably benign |
Het |
| Phlpp2 |
T |
C |
8: 110,603,603 (GRCm39) |
S55P |
probably benign |
Het |
| Pkhd1l1 |
T |
A |
15: 44,390,150 (GRCm39) |
V1422E |
possibly damaging |
Het |
| Plcd3 |
T |
G |
11: 102,971,013 (GRCm39) |
H181P |
probably benign |
Het |
| Psmc5 |
G |
A |
11: 106,151,990 (GRCm39) |
|
probably null |
Het |
| Psmd11 |
T |
C |
11: 80,361,515 (GRCm39) |
|
probably benign |
Het |
| Rab39 |
T |
C |
9: 53,598,016 (GRCm39) |
Y83C |
probably damaging |
Het |
| Ric8a |
A |
G |
7: 140,440,806 (GRCm39) |
E93G |
probably damaging |
Het |
| Rtp3 |
T |
C |
9: 110,816,152 (GRCm39) |
E133G |
possibly damaging |
Het |
| Serpina1e |
A |
C |
12: 103,915,363 (GRCm39) |
L281R |
probably damaging |
Het |
| Slc35e1 |
T |
C |
8: 73,246,415 (GRCm39) |
|
probably benign |
Het |
| Tent5c |
A |
G |
3: 100,379,686 (GRCm39) |
Y357H |
probably benign |
Het |
| Tmem63a |
A |
T |
1: 180,788,659 (GRCm39) |
E332V |
probably benign |
Het |
| Tnk1 |
T |
C |
11: 69,745,990 (GRCm39) |
T312A |
probably damaging |
Het |
| Traf3ip3 |
G |
T |
1: 192,877,119 (GRCm39) |
|
probably benign |
Het |
| Trappc11 |
A |
G |
8: 47,980,014 (GRCm39) |
V174A |
possibly damaging |
Het |
| Vmn1r174 |
G |
A |
7: 23,453,622 (GRCm39) |
R96H |
probably benign |
Het |
| Vmn1r7 |
T |
A |
6: 57,001,450 (GRCm39) |
Y270F |
possibly damaging |
Het |
| Vmn2r12 |
A |
G |
5: 109,240,714 (GRCm39) |
V133A |
probably benign |
Het |
| Vmn2r18 |
T |
A |
5: 151,485,988 (GRCm39) |
E502V |
probably damaging |
Het |
| Wipf3 |
C |
A |
6: 54,462,348 (GRCm39) |
P186Q |
probably damaging |
Het |
| Yipf5 |
A |
T |
18: 40,345,215 (GRCm39) |
M55K |
probably benign |
Het |
| Zbtb7a |
G |
A |
10: 80,979,820 (GRCm39) |
V5M |
probably damaging |
Het |
| Zfy1 |
G |
T |
Y: 726,040 (GRCm39) |
S575Y |
probably damaging |
Het |
|
| Other mutations in Fmn1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00495:Fmn1
|
APN |
2 |
113,274,812 (GRCm39) |
intron |
probably benign |
|
|
IGL01520:Fmn1
|
APN |
2 |
113,274,713 (GRCm39) |
intron |
probably benign |
|
|
IGL02039:Fmn1
|
APN |
2 |
113,195,425 (GRCm39) |
missense |
unknown |
|
|
IGL02222:Fmn1
|
APN |
2 |
113,423,454 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02238:Fmn1
|
APN |
2 |
113,412,470 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
IGL02373:Fmn1
|
APN |
2 |
113,194,471 (GRCm39) |
missense |
unknown |
|
|
IGL02490:Fmn1
|
APN |
2 |
113,359,817 (GRCm39) |
splice site |
probably benign |
|
|
IGL02506:Fmn1
|
APN |
2 |
113,355,640 (GRCm39) |
missense |
unknown |
|
|
IGL02684:Fmn1
|
APN |
2 |
113,355,622 (GRCm39) |
missense |
unknown |
|
|
IGL03008:Fmn1
|
APN |
2 |
113,195,445 (GRCm39) |
missense |
unknown |
|
|
IGL03058:Fmn1
|
APN |
2 |
113,272,159 (GRCm39) |
intron |
probably benign |
|
|
IGL03076:Fmn1
|
APN |
2 |
113,414,437 (GRCm39) |
missense |
probably damaging |
0.99 |
|
FR4304:Fmn1
|
UTSW |
2 |
113,356,128 (GRCm39) |
small insertion |
probably benign |
|
|
FR4304:Fmn1
|
UTSW |
2 |
113,356,119 (GRCm39) |
small insertion |
probably benign |
|
|
FR4342:Fmn1
|
UTSW |
2 |
113,356,128 (GRCm39) |
small insertion |
probably benign |
|
|
FR4589:Fmn1
|
UTSW |
2 |
113,356,119 (GRCm39) |
small insertion |
probably benign |
|
|
FR4589:Fmn1
|
UTSW |
2 |
113,356,118 (GRCm39) |
small insertion |
probably benign |
|
|
FR4737:Fmn1
|
UTSW |
2 |
113,356,129 (GRCm39) |
small insertion |
probably benign |
|
|
FR4737:Fmn1
|
UTSW |
2 |
113,356,126 (GRCm39) |
small insertion |
probably benign |
|
|
FR4737:Fmn1
|
UTSW |
2 |
113,356,123 (GRCm39) |
small insertion |
probably benign |
|
|
R0349:Fmn1
|
UTSW |
2 |
113,196,141 (GRCm39) |
missense |
unknown |
|
|
R0452:Fmn1
|
UTSW |
2 |
113,467,124 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R1215:Fmn1
|
UTSW |
2 |
113,523,375 (GRCm39) |
nonsense |
probably null |
|
|
R1471:Fmn1
|
UTSW |
2 |
113,523,439 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R1489:Fmn1
|
UTSW |
2 |
113,195,557 (GRCm39) |
missense |
unknown |
|
|
R1491:Fmn1
|
UTSW |
2 |
113,426,714 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1551:Fmn1
|
UTSW |
2 |
113,356,207 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R1558:Fmn1
|
UTSW |
2 |
113,523,463 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R1588:Fmn1
|
UTSW |
2 |
113,196,043 (GRCm39) |
missense |
unknown |
|
|
R1602:Fmn1
|
UTSW |
2 |
113,355,968 (GRCm39) |
missense |
unknown |
|
|
R1690:Fmn1
|
UTSW |
2 |
113,355,827 (GRCm39) |
missense |
unknown |
|
|
R1772:Fmn1
|
UTSW |
2 |
113,195,700 (GRCm39) |
missense |
unknown |
|
|
R1867:Fmn1
|
UTSW |
2 |
113,539,783 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1923:Fmn1
|
UTSW |
2 |
113,260,066 (GRCm39) |
intron |
probably benign |
|
|
R1941:Fmn1
|
UTSW |
2 |
113,195,488 (GRCm39) |
missense |
unknown |
|
|
R2019:Fmn1
|
UTSW |
2 |
113,194,825 (GRCm39) |
missense |
unknown |
|
|
R2140:Fmn1
|
UTSW |
2 |
113,425,393 (GRCm39) |
missense |
probably benign |
0.45 |
|
R2164:Fmn1
|
UTSW |
2 |
113,195,962 (GRCm39) |
missense |
unknown |
|
|
R2395:Fmn1
|
UTSW |
2 |
113,195,526 (GRCm39) |
missense |
unknown |
|
|
R2999:Fmn1
|
UTSW |
2 |
113,195,439 (GRCm39) |
missense |
unknown |
|
|
R3405:Fmn1
|
UTSW |
2 |
113,194,693 (GRCm39) |
missense |
unknown |
|
|
R3407:Fmn1
|
UTSW |
2 |
113,195,400 (GRCm39) |
missense |
unknown |
|
|
R3771:Fmn1
|
UTSW |
2 |
113,412,463 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3772:Fmn1
|
UTSW |
2 |
113,412,463 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3773:Fmn1
|
UTSW |
2 |
113,412,463 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3777:Fmn1
|
UTSW |
2 |
113,195,467 (GRCm39) |
missense |
unknown |
|
|
R4166:Fmn1
|
UTSW |
2 |
113,467,080 (GRCm39) |
missense |
probably benign |
0.33 |
|
R4477:Fmn1
|
UTSW |
2 |
113,274,744 (GRCm39) |
intron |
probably benign |
|
|
R4614:Fmn1
|
UTSW |
2 |
113,195,494 (GRCm39) |
missense |
unknown |
|
|
R4701:Fmn1
|
UTSW |
2 |
113,414,416 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R4867:Fmn1
|
UTSW |
2 |
113,414,465 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5063:Fmn1
|
UTSW |
2 |
113,195,266 (GRCm39) |
missense |
unknown |
|
|
R5224:Fmn1
|
UTSW |
2 |
113,195,470 (GRCm39) |
missense |
unknown |
|
|
R5510:Fmn1
|
UTSW |
2 |
113,426,714 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6083:Fmn1
|
UTSW |
2 |
113,194,648 (GRCm39) |
missense |
unknown |
|
|
R6234:Fmn1
|
UTSW |
2 |
113,196,000 (GRCm39) |
missense |
unknown |
|
|
R6266:Fmn1
|
UTSW |
2 |
113,426,683 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6764:Fmn1
|
UTSW |
2 |
113,355,560 (GRCm39) |
missense |
unknown |
|
|
R7054:Fmn1
|
UTSW |
2 |
113,195,353 (GRCm39) |
missense |
unknown |
|
|
R7311:Fmn1
|
UTSW |
2 |
113,356,025 (GRCm39) |
missense |
unknown |
|
|
R7439:Fmn1
|
UTSW |
2 |
113,271,956 (GRCm39) |
missense |
unknown |
|
|
R7440:Fmn1
|
UTSW |
2 |
113,271,956 (GRCm39) |
missense |
unknown |
|
|
R7441:Fmn1
|
UTSW |
2 |
113,271,956 (GRCm39) |
missense |
unknown |
|
|
R7444:Fmn1
|
UTSW |
2 |
113,271,956 (GRCm39) |
missense |
unknown |
|
|
R7461:Fmn1
|
UTSW |
2 |
113,194,416 (GRCm39) |
missense |
unknown |
|
|
R7526:Fmn1
|
UTSW |
2 |
113,518,479 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7540:Fmn1
|
UTSW |
2 |
113,359,655 (GRCm39) |
splice site |
probably null |
|
|
R7576:Fmn1
|
UTSW |
2 |
113,195,353 (GRCm39) |
missense |
unknown |
|
|
R7657:Fmn1
|
UTSW |
2 |
113,355,538 (GRCm39) |
missense |
unknown |
|
|
R7669:Fmn1
|
UTSW |
2 |
113,195,822 (GRCm39) |
missense |
unknown |
|
|
R7713:Fmn1
|
UTSW |
2 |
113,356,159 (GRCm39) |
missense |
unknown |
|
|
R7841:Fmn1
|
UTSW |
2 |
113,359,810 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7953:Fmn1
|
UTSW |
2 |
113,426,689 (GRCm39) |
missense |
probably benign |
0.03 |
|
R7959:Fmn1
|
UTSW |
2 |
113,195,967 (GRCm39) |
missense |
unknown |
|
|
R8041:Fmn1
|
UTSW |
2 |
113,194,939 (GRCm39) |
missense |
unknown |
|
|
R8152:Fmn1
|
UTSW |
2 |
113,196,037 (GRCm39) |
missense |
unknown |
|
|
R8203:Fmn1
|
UTSW |
2 |
113,355,620 (GRCm39) |
missense |
unknown |
|
|
R8318:Fmn1
|
UTSW |
2 |
113,195,502 (GRCm39) |
missense |
unknown |
|
|
R8356:Fmn1
|
UTSW |
2 |
113,195,385 (GRCm39) |
missense |
unknown |
|
|
R8456:Fmn1
|
UTSW |
2 |
113,195,385 (GRCm39) |
missense |
unknown |
|
|
R8698:Fmn1
|
UTSW |
2 |
113,260,152 (GRCm39) |
missense |
unknown |
|
|
R8861:Fmn1
|
UTSW |
2 |
113,195,149 (GRCm39) |
missense |
unknown |
|
|
R8907:Fmn1
|
UTSW |
2 |
113,355,914 (GRCm39) |
missense |
unknown |
|
|
R9147:Fmn1
|
UTSW |
2 |
113,271,973 (GRCm39) |
missense |
unknown |
|
|
R9148:Fmn1
|
UTSW |
2 |
113,271,973 (GRCm39) |
missense |
unknown |
|
|
R9536:Fmn1
|
UTSW |
2 |
113,309,262 (GRCm39) |
missense |
unknown |
|
|
R9574:Fmn1
|
UTSW |
2 |
113,425,402 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9577:Fmn1
|
UTSW |
2 |
113,194,470 (GRCm39) |
missense |
unknown |
|
|
RF003:Fmn1
|
UTSW |
2 |
113,356,131 (GRCm39) |
small insertion |
probably benign |
|
|
Z1088:Fmn1
|
UTSW |
2 |
113,272,270 (GRCm39) |
intron |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GGCTTTTCCACTGGGGTTTACAGC -3'
(R):5'- GGAGATGCTTATGACAAGCGGCAC -3'
Sequencing Primer
(F):5'- ACAGCTATTCAGTGGATAAGTGTC -3'
(R):5'- AAGCGGCACAGTTTGCTTTATC -3'
|
| Posted On |
2013-06-12 |
Incidental Mutation