Incidental Mutation 'R0533:Vstm2a'
ID 49331
Institutional Source Beutler Lab
Gene Symbol Vstm2a
Ensembl Gene ENSMUSG00000048834
Gene Name V-set and transmembrane domain containing 2A
Synonyms 9330184N17Rik, Vstm2
MMRRC Submission 038725-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock # R0533 (G1)
Quality Score 225
Status Validated
Chromosome 11
Chromosomal Location 16257724-16427310 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) C to T at 16263041 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Alanine to Valine at position 142 (A142V)
Ref Sequence ENSEMBL: ENSMUSP00000105272 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000109645] [ENSMUST00000109647]
AlphaFold Q8R0A6
Predicted Effect probably damaging
Transcript: ENSMUST00000109645
AA Change: A142V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000105272
Gene: ENSMUSG00000048834
AA Change: A142V

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
IG 33 149 1.32e-12 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000109647
AA Change: A142V

PolyPhen 2 Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000105274
Gene: ENSMUSG00000048834
AA Change: A142V

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
IG 33 149 1.32e-12 SMART
low complexity region 266 280 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000207256
Predicted Effect noncoding transcript
Transcript: ENSMUST00000208440
Predicted Effect unknown
Transcript: ENSMUST00000208926
AA Change: A123V
Meta Mutation Damage Score 0.1668 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 96.0%
  • 20x: 91.5%
Validation Efficiency 100% (57/57)
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadat T G 8: 60,531,763 probably benign Het
Abcb1b A T 5: 8,864,113 probably null Het
Adcy10 A G 1: 165,564,023 N1283S probably benign Het
Adgrb1 T A 15: 74,541,559 W531R probably damaging Het
Ago4 A G 4: 126,516,860 V246A probably benign Het
Arid5b A T 10: 68,186,033 D242E probably damaging Het
Arpp21 A G 9: 112,126,505 V522A probably benign Het
Atg4b T A 1: 93,784,910 probably benign Het
Capn12 T C 7: 28,887,683 F359S possibly damaging Het
Ccdc88c A T 12: 100,954,282 I360N probably damaging Het
Clic3 A G 2: 25,458,138 Y99C probably damaging Het
Cux1 T C 5: 136,307,859 E925G probably damaging Het
Dnah10 G A 5: 124,775,250 probably null Het
Dnah17 A G 11: 118,110,537 V860A possibly damaging Het
Etv5 C T 16: 22,436,075 probably benign Het
Fam83a T A 15: 58,009,811 N345K probably benign Het
G3bp1 T C 11: 55,498,626 F383L probably damaging Het
Gm13089 G T 4: 143,698,020 C284* probably null Het
Gpm6a A G 8: 55,055,374 probably null Het
Grid1 T A 14: 35,309,385 Y312N possibly damaging Het
Gstm4 T C 3: 108,043,525 N51S probably benign Het
Hid1 A T 11: 115,348,809 I765N probably damaging Het
Hmmr A G 11: 40,709,989 V518A unknown Het
Itgb6 A G 2: 60,669,197 V84A probably benign Het
Kbtbd4 A G 2: 90,907,604 K233E probably benign Het
Kif15 A T 9: 123,009,433 probably benign Het
Klre1 T C 6: 129,583,193 S143P probably damaging Het
Krt81 T C 15: 101,461,389 D216G probably benign Het
Mctp2 G T 7: 72,080,822 H868Q probably benign Het
Morc2b G C 17: 33,135,932 Y955* probably null Het
Myog A C 1: 134,290,473 N140H possibly damaging Het
Myrf G C 19: 10,218,162 T428S probably benign Het
Naip2 A C 13: 100,161,782 I582S probably benign Het
Neil3 A T 8: 53,638,775 probably null Het
Nrg1 T C 8: 31,831,245 probably null Het
Olfr681 G A 7: 105,122,350 V298I probably benign Het
Olfr689 A T 7: 105,314,372 M123L probably benign Het
Olfr99 A T 17: 37,280,291 L43* probably null Het
Pramef25 A T 4: 143,950,720 D96E possibly damaging Het
Ptger2 T A 14: 44,988,982 N6K possibly damaging Het
Ryr1 T A 7: 29,078,780 E2097V probably damaging Het
Sel1l A T 12: 91,820,094 F397Y probably damaging Het
Skint5 A G 4: 113,827,867 V551A unknown Het
Slc39a12 A G 2: 14,400,331 T245A probably benign Het
Syne1 C T 10: 5,358,438 V706I probably benign Het
Tbc1d8 G T 1: 39,372,774 Q994K possibly damaging Het
Tnrc6b C T 15: 80,876,653 T187I probably benign Het
Ttll6 G A 11: 96,154,756 A600T probably benign Het
Ust T C 10: 8,248,080 probably benign Het
Vmn2r71 GT GTT 7: 85,619,218 probably null Het
Wfs1 T A 5: 36,973,722 probably benign Het
Wrap73 G A 4: 154,151,649 G145D probably damaging Het
Wrap73 G A 4: 154,156,154 V368M possibly damaging Het
Xrra1 T A 7: 99,875,145 probably null Het
Zfhx2 C T 14: 55,064,090 V2146I probably benign Het
Zfp335 A T 2: 164,907,922 L185* probably null Het
Other mutations in Vstm2a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01024:Vstm2a APN 11 16281874 missense possibly damaging 0.51
popiah UTSW 11 16263041 missense probably damaging 1.00
R0167:Vstm2a UTSW 11 16258044 missense probably damaging 0.99
R0314:Vstm2a UTSW 11 16368388 splice site probably benign
R0480:Vstm2a UTSW 11 16263240 missense probably damaging 1.00
R0613:Vstm2a UTSW 11 16263140 missense probably damaging 1.00
R0788:Vstm2a UTSW 11 16259968 missense probably damaging 1.00
R1750:Vstm2a UTSW 11 16263166 missense possibly damaging 0.49
R1934:Vstm2a UTSW 11 16409734 missense unknown
R2066:Vstm2a UTSW 11 16261483 missense probably benign 0.09
R2101:Vstm2a UTSW 11 16263191 missense probably benign 0.19
R2251:Vstm2a UTSW 11 16368273 missense probably benign 0.00
R4084:Vstm2a UTSW 11 16263098 missense probably damaging 1.00
R4093:Vstm2a UTSW 11 16259884 missense probably damaging 0.98
R4745:Vstm2a UTSW 11 16263061 missense probably damaging 1.00
R4978:Vstm2a UTSW 11 16261460 missense possibly damaging 0.82
R5533:Vstm2a UTSW 11 16263125 missense possibly damaging 0.49
R5873:Vstm2a UTSW 11 16258044 missense probably damaging 0.99
R5894:Vstm2a UTSW 11 16261483 missense probably benign 0.09
R7094:Vstm2a UTSW 11 16257990 unclassified probably benign
R7753:Vstm2a UTSW 11 16263040 missense probably damaging 1.00
R8313:Vstm2a UTSW 11 16281898 missense probably damaging 1.00
R8336:Vstm2a UTSW 11 16257801 unclassified probably benign
Predicted Primers PCR Primer
(F):5'- CACTCTGGCACTGCTAAAATTGCAC -3'
(R):5'- ATGCTACTGAACCGAGCTTTGGG -3'

Sequencing Primer
(F):5'- ACTTATGACCTCTCAAGTAGGC -3'
(R):5'- ACCGAGCTTTGGGTAGCAG -3'
Posted On 2013-06-12