Mutagenetix > Incidental Mutation

Incidental Mutation 'R0537:Ccdc9'

49498

Institutional Source

Beutler Lab

Gene Symbol

Ccdc9

Ensembl Gene

ENSMUSG00000041375

Gene Name

coiled-coil domain containing 9

Synonyms

2600011L02Rik

MMRRC Submission

038729-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R0537 (G1)

Quality Score

210

Status

Validated

Chromosome

Chromosomal Location

16007967-16020720 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to G at 16014701 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133798 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041010] [ENSMUST00000118976] [ENSMUST00000174270] [ENSMUST00000145519] [ENSMUST00000148741] [ENSMUST00000150528] [ENSMUST00000146609]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000041010

SMART Domains

Protein: ENSMUSP00000035597
Gene: ENSMUSG00000041375

Domain	Start	End	E-Value	Type
coiled coil region	5	52	N/A	INTRINSIC
low complexity region	75	95	N/A	INTRINSIC
low complexity region	121	135	N/A	INTRINSIC
coiled coil region	150	184	N/A	INTRINSIC
Pfam:DUF4594	203	378	1.1e-63	PFAM
coiled coil region	425	453	N/A	INTRINSIC
low complexity region	490	507	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000118976

SMART Domains

Protein: ENSMUSP00000114088
Gene: ENSMUSG00000041375

Domain	Start	End	E-Value	Type
coiled coil region	5	52	N/A	INTRINSIC
low complexity region	75	95	N/A	INTRINSIC
low complexity region	121	135	N/A	INTRINSIC
coiled coil region	150	184	N/A	INTRINSIC
Pfam:DUF4594	204	375	6.3e-57	PFAM
coiled coil region	425	453	N/A	INTRINSIC
low complexity region	490	507	N/A	INTRINSIC
low complexity region	535	549	N/A	INTRINSIC
low complexity region	580	588	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124084

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129447

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131963

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137993

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144186

Predicted Effect

probably benign
Transcript: ENSMUST00000174270

SMART Domains

Protein: ENSMUSP00000133798
Gene: ENSMUSG00000041375

Domain	Start	End	E-Value	Type
coiled coil region	5	52	N/A	INTRINSIC
low complexity region	75	95	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000146085

SMART Domains

Protein: ENSMUSP00000134049
Gene: ENSMUSG00000041375

Domain	Start	End	E-Value	Type
Pfam:DUF4594	1	85	5.2e-16	PFAM
coiled coil region	135	163	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000145519

Predicted Effect

probably benign
Transcript: ENSMUST00000148741

Predicted Effect

probably benign
Transcript: ENSMUST00000150528

Predicted Effect

probably benign
Transcript: ENSMUST00000146609

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.9%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930474N05Rik	A	T	14: 35,818,657 (GRCm39)	K218N	probably benign	Het
Acot11	T	C	4: 106,619,652 (GRCm39)	E156G	probably benign	Het
Arhgef28	A	T	13: 98,094,224 (GRCm39)	N973K	probably damaging	Het
B4galt3	T	C	1: 171,101,821 (GRCm39)		probably benign	Het
Bmpr1a	T	C	14: 34,165,769 (GRCm39)		probably benign	Het
Camkmt	A	T	17: 85,702,087 (GRCm39)	I184F	probably benign	Het
Ccdc33	T	C	9: 58,024,737 (GRCm39)	Y163C	probably damaging	Het
Dars2	A	T	1: 160,888,318 (GRCm39)	C201S	possibly damaging	Het
Dnajc1	A	T	2: 18,312,767 (GRCm39)	S194R	possibly damaging	Het
Dock8	A	G	19: 25,148,941 (GRCm39)	D1473G	probably benign	Het
Dpm2	T	A	2: 32,462,961 (GRCm39)		probably null	Het
Dsg4	T	C	18: 20,591,628 (GRCm39)	S456P	probably damaging	Het
Gys1	T	C	7: 45,089,425 (GRCm39)	S195P	probably damaging	Het
Heatr6	G	T	11: 83,670,290 (GRCm39)	E948*	probably null	Het
Itgal	G	A	7: 126,910,445 (GRCm39)	R518Q	possibly damaging	Het
Klhdc8b	G	C	9: 108,326,422 (GRCm39)	R158G	possibly damaging	Het
Klhl41	G	A	2: 69,500,554 (GRCm39)	R5Q	probably benign	Het
Lrrtm4	A	T	6: 79,999,103 (GRCm39)	T172S	probably benign	Het
Lypd1	A	G	1: 125,840,604 (GRCm39)		probably benign	Het
Mei1	T	C	15: 81,975,562 (GRCm39)	F121S	possibly damaging	Het
Mtor	C	T	4: 148,622,817 (GRCm39)	R1966W	probably damaging	Het
Myh7	A	G	14: 55,228,256 (GRCm39)	F247L	possibly damaging	Het
Nebl	G	T	2: 17,409,026 (GRCm39)	D392E	possibly damaging	Het
Notch2	C	A	3: 98,024,057 (GRCm39)	N840K	possibly damaging	Het
Nubp1	T	C	16: 10,240,678 (GRCm39)		probably benign	Het
Or5w16	A	T	2: 87,577,017 (GRCm39)	Q159L	probably benign	Het
Or7g19	T	C	9: 18,856,444 (GRCm39)	S167P	probably damaging	Het
Pcdh17	T	A	14: 84,684,897 (GRCm39)	S455T	probably damaging	Het
Picalm	C	A	7: 89,779,876 (GRCm39)	H32Q	probably benign	Het
Pold1	T	C	7: 44,184,516 (GRCm39)	E828G	probably damaging	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Rala	A	T	13: 18,063,233 (GRCm39)	N119K	probably benign	Het
Rasal2	A	T	1: 156,975,362 (GRCm39)	V1149E	possibly damaging	Het
Rd3	A	G	1: 191,715,501 (GRCm39)	Y92C	probably damaging	Het
Rps18-ps6	A	T	13: 97,897,071 (GRCm39)	F9Y	probably benign	Het
Sart1	A	T	19: 5,431,752 (GRCm39)	D635E	probably damaging	Het
Sec16b	A	G	1: 157,365,116 (GRCm39)	T335A	possibly damaging	Het
Slc11a2	C	T	15: 100,303,679 (GRCm39)	G185R	probably damaging	Het
Slc2a12	G	A	10: 22,540,967 (GRCm39)	R274H	probably damaging	Het
Spag17	T	C	3: 100,032,618 (GRCm39)	V2276A	probably damaging	Het
Tcam1	G	A	11: 106,174,904 (GRCm39)	E120K	probably benign	Het
Tenm2	T	C	11: 36,054,557 (GRCm39)	D601G	probably damaging	Het
Tmem168	C	A	6: 13,603,360 (GRCm39)	C2F	probably damaging	Het
Tmem80	A	G	7: 140,913,609 (GRCm39)	Y13C	probably damaging	Het
Try4	T	A	6: 41,281,296 (GRCm39)	N79K	probably benign	Het
Vldlr	C	A	19: 27,225,318 (GRCm39)	N798K	probably damaging	Het
Wdr41	A	G	13: 95,131,813 (GRCm39)		probably benign	Het
Zfp30	A	T	7: 29,492,160 (GRCm39)	E138V	probably damaging	Het
Zfp366	A	C	13: 99,365,786 (GRCm39)	T316P	probably damaging	Het
Zfp563	A	T	17: 33,323,659 (GRCm39)	S85C	possibly damaging	Het
Znfx1	T	C	2: 166,883,621 (GRCm39)	H162R	probably damaging	Het

Other mutations in Ccdc9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01387:Ccdc9	APN	7	16,018,424 (GRCm39)	start codon destroyed	probably null	0.01
IGL02167:Ccdc9	APN	7	16,018,284 (GRCm39)	nonsense	probably null
IGL02513:Ccdc9	APN	7	16,018,434 (GRCm39)	utr 5 prime	probably benign
IGL02805:Ccdc9	APN	7	16,009,199 (GRCm39)	missense	probably benign	0.01
R0631:Ccdc9	UTSW	7	16,012,384 (GRCm39)	missense	probably damaging	1.00
R1340:Ccdc9	UTSW	7	16,009,315 (GRCm39)	unclassified	probably benign
R1758:Ccdc9	UTSW	7	16,010,161 (GRCm39)	missense	probably damaging	0.99
R2067:Ccdc9	UTSW	7	16,012,475 (GRCm39)	splice site	probably null
R2207:Ccdc9	UTSW	7	16,018,194 (GRCm39)	critical splice donor site	probably benign
R5278:Ccdc9	UTSW	7	16,012,306 (GRCm39)	nonsense	probably null
R5371:Ccdc9	UTSW	7	16,014,655 (GRCm39)	missense	probably damaging	1.00
R7341:Ccdc9	UTSW	7	16,014,552 (GRCm39)	missense	probably damaging	1.00
R7526:Ccdc9	UTSW	7	16,016,325 (GRCm39)	missense	probably damaging	0.98
R7556:Ccdc9	UTSW	7	16,018,491 (GRCm39)	intron	probably benign
R7683:Ccdc9	UTSW	7	16,018,287 (GRCm39)	missense	probably damaging	1.00
R8673:Ccdc9	UTSW	7	16,018,286 (GRCm39)	missense	probably damaging	1.00
R9262:Ccdc9	UTSW	7	16,012,400 (GRCm39)	missense	probably benign	0.01
R9322:Ccdc9	UTSW	7	16,012,360 (GRCm39)	missense	probably damaging	0.99
R9481:Ccdc9	UTSW	7	16,016,761 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACACTGGCAGAGTATGGCAACC -3'
(R):5'- TCCCCACACACGTTTTAAGTTAGGC -3'

Sequencing Primer
(F):5'- ATAGTGAGTTCCTAAGCAGCC -3'
(R):5'- AATTTGGGCTGCCCTGTC -3'

Posted On

2013-06-12