Mutagenetix > Incidental Mutation

Incidental Mutation 'R0542:Syt14'

49956

Institutional Source

Beutler Lab

Gene Symbol

Syt14

Ensembl Gene

ENSMUSG00000016200

Gene Name

synaptotagmin XIV

Synonyms

B230320I09Rik

MMRRC Submission

038734-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0542 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

192573541-192718083 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 192613111 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 563 (T563K)

Ref Sequence

ENSEMBL: ENSMUSP00000151129 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016344] [ENSMUST00000195354] [ENSMUST00000195530] [ENSMUST00000215093]

AlphaFold

Q7TN84

Predicted Effect

probably damaging
Transcript: ENSMUST00000016344
AA Change: T280K

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000016344
Gene: ENSMUSG00000016200
AA Change: T280K

Domain	Start	End	E-Value	Type
transmembrane domain	25	47	N/A	INTRINSIC
low complexity region	81	94	N/A	INTRINSIC
C2	276	378	1.41e0	SMART
C2	431	547	1.38e-9	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191907

Predicted Effect

probably damaging
Transcript: ENSMUST00000195354
AA Change: T280K

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000142190
Gene: ENSMUSG00000016200
AA Change: T280K

Domain	Start	End	E-Value	Type
transmembrane domain	25	47	N/A	INTRINSIC
low complexity region	81	94	N/A	INTRINSIC
C2	276	378	1.41e0	SMART
C2	431	547	1.38e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195530

SMART Domains

Protein: ENSMUSP00000141563
Gene: ENSMUSG00000016200

Domain	Start	End	E-Value	Type
transmembrane domain	25	47	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000215093
AA Change: T563K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Meta Mutation Damage Score

0.1108

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.1%
20x: 95.0%

Validation Efficiency

99% (70/71)

MGI Phenotype

FUNCTION: This gene encodes a member of the synaptotagmin family. The encoded protein may be involved in membrane trafficking. Disruption of a similar gene in human has been associated with autosomal recessive spinocerebellar ataxia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abhd12b	C	A	12: 70,210,269 (GRCm39)	N71K	possibly damaging	Het
Adgrl2	A	G	3: 148,564,854 (GRCm39)	I242T	probably damaging	Het
Adgrv1	A	G	13: 81,721,437 (GRCm39)	S714P	probably damaging	Het
Agap3	G	A	5: 24,705,184 (GRCm39)	R704Q	possibly damaging	Het
Ankrd11	T	C	8: 123,622,509 (GRCm39)	R448G	probably damaging	Het
Anks1b	T	C	10: 89,909,829 (GRCm39)		probably benign	Het
Caml	A	T	13: 55,770,974 (GRCm39)	Q24L	possibly damaging	Het
Cdc14b	G	A	13: 64,391,497 (GRCm39)	T124I	probably benign	Het
Clca3a2	A	G	3: 144,781,571 (GRCm39)		probably benign	Het
Col12a1	A	G	9: 79,512,610 (GRCm39)		probably null	Het
Crispld1	T	C	1: 17,816,992 (GRCm39)	V183A	possibly damaging	Het
Cstdc1	A	G	2: 148,624,092 (GRCm39)	N22S	probably benign	Het
Dhx40	C	T	11: 86,695,082 (GRCm39)		probably null	Het
Dmxl1	T	A	18: 50,026,761 (GRCm39)	D1956E	probably benign	Het
Dsc2	A	G	18: 20,184,283 (GRCm39)	V35A	probably damaging	Het
Dync2i2	A	G	2: 29,921,837 (GRCm39)	V508A	probably damaging	Het
Elovl2	A	G	13: 41,345,452 (GRCm39)		probably benign	Het
Gapvd1	T	C	2: 34,615,048 (GRCm39)		probably benign	Het
Gnaq	T	A	19: 16,196,982 (GRCm39)	I56N	probably damaging	Het
Gpr139	T	C	7: 118,744,306 (GRCm39)	D93G	probably benign	Het
Hars1	C	T	18: 36,904,234 (GRCm39)	R215H	probably benign	Het
Helz2	C	A	2: 180,873,882 (GRCm39)	W2204L	probably damaging	Het
Ift70b	A	G	2: 75,767,055 (GRCm39)	V566A	probably damaging	Het
Itgb6	A	T	2: 60,435,480 (GRCm39)	C757S	possibly damaging	Het
Kpnb1	G	A	11: 97,078,398 (GRCm39)	T5I	probably benign	Het
Krt82	T	C	15: 101,454,035 (GRCm39)		probably benign	Het
Lgals9	T	A	11: 78,860,546 (GRCm39)	K175N	possibly damaging	Het
Lrp2	A	G	2: 69,258,998 (GRCm39)	I4564T	probably benign	Het
Mblac1	A	G	5: 138,192,798 (GRCm39)	T47A	possibly damaging	Het
Med12l	G	A	3: 58,949,822 (GRCm39)	D182N	probably damaging	Het
Megf9	A	G	4: 70,353,585 (GRCm39)	I407T	probably benign	Het
Mtmr6	A	T	14: 60,529,578 (GRCm39)		probably null	Het
Mtor	A	G	4: 148,624,907 (GRCm39)	T2173A	probably benign	Het
Mzt1	A	T	14: 99,277,938 (GRCm39)		probably benign	Het
Narf	T	C	11: 121,143,690 (GRCm39)	L444P	probably damaging	Het
Nsd1	A	T	13: 55,408,271 (GRCm39)	Q1305L	possibly damaging	Het
Ntsr1	A	G	2: 180,184,374 (GRCm39)	Y359C	probably damaging	Het
Olfm1	A	G	2: 28,104,640 (GRCm39)	D159G	possibly damaging	Het
Or2l13b	A	T	16: 19,348,732 (GRCm39)	*313R	probably null	Het
Pcdh1	C	T	18: 38,322,975 (GRCm39)	V953I	probably damaging	Het
Pcdhb11	A	T	18: 37,556,887 (GRCm39)	D739V	probably damaging	Het
Pdgfd	A	G	9: 6,359,769 (GRCm39)	N280S	probably damaging	Het
Per2	A	T	1: 91,366,054 (GRCm39)		probably null	Het
Pfkp	G	T	13: 6,672,028 (GRCm39)	C122*	probably null	Het
Plxna4	G	A	6: 32,169,232 (GRCm39)	R1322W	probably damaging	Het
Ppox	A	G	1: 171,106,818 (GRCm39)	L202P	probably damaging	Het
Ppp1r3e	G	A	14: 55,114,588 (GRCm39)	P58L	probably benign	Het
Prr23a2	A	C	9: 98,739,086 (GRCm39)	N148T	probably benign	Het
Psd	T	C	19: 46,302,649 (GRCm39)	T842A	probably damaging	Het
Ranbp2	C	T	10: 58,314,236 (GRCm39)	A1652V	probably benign	Het
Rragd	G	A	4: 33,007,103 (GRCm39)	V144M	probably damaging	Het
Sema6a	T	G	18: 47,381,643 (GRCm39)	D968A	probably damaging	Het
Slc30a5	A	T	13: 100,945,793 (GRCm39)		probably null	Het
Snx17	G	T	5: 31,353,895 (GRCm39)		probably null	Het
Styxl2	A	T	1: 165,928,853 (GRCm39)	M253K	possibly damaging	Het
Tada3	T	C	6: 113,352,175 (GRCm39)	K85E	probably damaging	Het
Tspear	T	C	10: 77,716,921 (GRCm39)	V532A	probably benign	Het
Ttn	A	T	2: 76,723,453 (GRCm39)	C6426S	possibly damaging	Het
Unc79	T	C	12: 103,060,437 (GRCm39)		probably benign	Het
Usp19	A	G	9: 108,371,584 (GRCm39)		probably null	Het
Vav3	G	A	3: 109,434,746 (GRCm39)	D426N	probably damaging	Het
Vezt	T	C	10: 93,842,958 (GRCm39)		probably null	Het
Vldlr	G	T	19: 27,213,655 (GRCm39)	R114L	probably benign	Het
Wwc2	C	T	8: 48,321,414 (GRCm39)	V567I	unknown	Het
Zfp423	T	C	8: 88,507,237 (GRCm39)	T911A	probably damaging	Het
Zfp719	A	G	7: 43,238,677 (GRCm39)		probably null	Het
Zkscan16	A	T	4: 58,956,597 (GRCm39)	H293L	possibly damaging	Het
Zkscan6	A	C	11: 65,719,525 (GRCm39)	N515T	possibly damaging	Het
Znfx1	A	G	2: 166,897,575 (GRCm39)	S450P	probably damaging	Het

Other mutations in Syt14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00584:Syt14	APN	1	192,612,792 (GRCm39)	missense	possibly damaging	0.88
IGL01535:Syt14	APN	1	192,669,073 (GRCm39)	missense	probably damaging	1.00
IGL01935:Syt14	APN	1	192,615,679 (GRCm39)	missense	probably damaging	0.99
IGL02531:Syt14	APN	1	192,584,242 (GRCm39)	makesense	probably null
IGL02716:Syt14	APN	1	192,662,843 (GRCm39)	missense	possibly damaging	0.92
IGL03051:Syt14	APN	1	192,615,528 (GRCm39)	missense	probably benign	0.19
IGL03268:Syt14	APN	1	192,669,142 (GRCm39)	missense	probably benign	0.25
crumpled	UTSW	1	192,584,177 (GRCm39)	missense	possibly damaging	0.82
R0598:Syt14	UTSW	1	192,579,622 (GRCm39)	missense	probably damaging	1.00
R1533:Syt14	UTSW	1	192,613,084 (GRCm39)	missense	possibly damaging	0.94
R1675:Syt14	UTSW	1	192,579,790 (GRCm39)	missense	probably damaging	1.00
R1907:Syt14	UTSW	1	192,584,143 (GRCm39)	missense	probably damaging	1.00
R3032:Syt14	UTSW	1	192,669,059 (GRCm39)	missense	possibly damaging	0.86
R3828:Syt14	UTSW	1	192,584,083 (GRCm39)	missense	probably damaging	1.00
R3965:Syt14	UTSW	1	192,584,175 (GRCm39)	missense	probably benign	0.04
R4646:Syt14	UTSW	1	192,615,633 (GRCm39)	missense	probably damaging	1.00
R4730:Syt14	UTSW	1	192,613,094 (GRCm39)	missense	probably damaging	1.00
R4909:Syt14	UTSW	1	192,581,167 (GRCm39)	missense	probably damaging	1.00
R4970:Syt14	UTSW	1	192,613,285 (GRCm39)	intron	probably benign
R5039:Syt14	UTSW	1	192,709,292 (GRCm39)	missense	probably damaging	1.00
R5363:Syt14	UTSW	1	192,612,971 (GRCm39)	missense	possibly damaging	0.94
R5593:Syt14	UTSW	1	192,613,231 (GRCm39)	missense	probably damaging	1.00
R5980:Syt14	UTSW	1	192,662,716 (GRCm39)	missense	possibly damaging	0.89
R6014:Syt14	UTSW	1	192,613,003 (GRCm39)	missense	probably damaging	0.99
R6221:Syt14	UTSW	1	192,612,908 (GRCm39)	missense	probably damaging	1.00
R6547:Syt14	UTSW	1	192,584,177 (GRCm39)	missense	possibly damaging	0.82
R6804:Syt14	UTSW	1	192,584,161 (GRCm39)	missense	probably damaging	1.00
R7038:Syt14	UTSW	1	192,665,966 (GRCm39)	intron	probably benign
R7179:Syt14	UTSW	1	192,615,571 (GRCm39)	missense	probably damaging	1.00
R7196:Syt14	UTSW	1	192,717,936 (GRCm39)	missense	probably benign	0.01
R7311:Syt14	UTSW	1	192,662,858 (GRCm39)	missense	probably benign
R7577:Syt14	UTSW	1	192,665,885 (GRCm39)	missense	unknown
R7769:Syt14	UTSW	1	192,666,632 (GRCm39)	missense	unknown
R7779:Syt14	UTSW	1	192,666,751 (GRCm39)	missense	unknown
R8213:Syt14	UTSW	1	192,669,137 (GRCm39)	missense	probably benign	0.00
R8888:Syt14	UTSW	1	192,579,866 (GRCm39)	missense	probably damaging	1.00
R8939:Syt14	UTSW	1	192,612,896 (GRCm39)	missense	probably damaging	1.00
R8960:Syt14	UTSW	1	192,666,515 (GRCm39)	intron	probably benign
R9109:Syt14	UTSW	1	192,612,944 (GRCm39)	nonsense	probably null
R9117:Syt14	UTSW	1	192,666,126 (GRCm39)	missense	unknown
R9127:Syt14	UTSW	1	192,584,131 (GRCm39)	missense	probably damaging	0.98
R9213:Syt14	UTSW	1	192,612,814 (GRCm39)	missense	probably damaging	0.97
R9298:Syt14	UTSW	1	192,612,944 (GRCm39)	nonsense	probably null
R9741:Syt14	UTSW	1	192,666,449 (GRCm39)	missense	unknown
Z1176:Syt14	UTSW	1	192,615,506 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TCCAATCATCTCGGATTCAACGTGG -3'
(R):5'- GACTGGATGTACACTGTCTTGAGCC -3'

Sequencing Primer
(F):5'- TTCTGTGAAGACAGGGCATG -3'
(R):5'- CTTAGACATACCTGTAAATGGAGCC -3'

Posted On

2013-06-12